LOC110491577 (LOC106579241)


Basic Information

Item Value
gene id LOC110491577
gene name LOC106579241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20461124 ~ 20469565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565126.2
AAAATACCGTGGAACAAACAAGAAAGCCAGCGTGCAGAAGTTTGTTCGGGAATGTTCTACTAAAATCAAtcaaaacaaaaatattttgggTGTCTTCCAAGTCTCAACTTCCTCAACATTGTTCTGTCTTTAGCACAGCCCCGTGCTATGTGTTCTCCATTCACTGTCCTCTCATTGTTAGTCACCCAGTCATTTCCCTGATGTGCAGATCTTAAGTAGGCATACTGAACAGCGATGGGAATGACATACCTTTTCCTGATATTGGCAGtgttTTCTGTTGTGGTCAAGAGTCAGCTCAAACCCCAGGTTTCCATGGTCCTCACATTCAAGCAAGTCTACTCTGGGGATACAATAATTCTGAGTTGTGACAACAGCATAGGTAAGGTAAAATGGTTATTCAACAAGGTTGAGGATCAAAATCAAGCCAACAAGACATGGAGCATAAGGGCTGTCTCCGCTAAGAACTCCGGCTCATATCAGTGTGAGAACAATGGACAGAAGAGTGACAACTTCAACATCACAGTTCAAGAGTACCTTCCACCTGCTACTCTGTTGCTCAAGTCAGGGGAGCCAGTCATCAACATAAATGGCTCAGTAGTCCTGGAGCTGCtggtggaggaggatgagagTCTGAAGGGATGGTGCTGTTGGGTGTACAAGGCTGGGAGAGTAGGAAGAATAACACTCAAGAAAAGTCTGACGACCGAAAATCACAAAGTGTTGACCTTTCAACCCAGCAAACTGAAAGACAACGTCGCCATCTACTGGTGTAGTGACGAGAATAACCTGAGGAGCACCCCCCTCACCATCAAGACCTCAGACCGGGTCGTACGGATGATGATATTGCCTGGGCCTGCTCTTTTGGGGGAGAAACTGAGTCTGCGGTGTGTTGTGTCGGGGACCGACCGAATTAGCCACACTATATTCTACAAGGATAAACAGACGATAAAAGACGGTTCCAGTTCTTCTCATGTTATCAACAATGTGACCGAGTCCGACCAGGGGGTATATAGCTGTCAAGCCACCTTTACGCGAAGCAACAAAGGAGTGCCAAACACAGTCAACTCAACTCAACAAGAACTGATTGTTTCAGCACCCCCTATGAAGGCAGTTGTCTCTGAGTCCGCTGGCCTGTCCTGCTCATGCTCCAGCTGCCCCAACGGCGCCTTCTATCACTGGTACTACAAACAGCACAATCCTCAGTGGCTACCTAAAGGCATCAGCGAAAGCTACACAGGTTTCATGCCGGCTGGTAGTTACGCATGCAGAGCAGTGTGGAAAAACGGGAGGTCTGCACTAAGCAATATCCATCATTTGACAGATGACGTCGACGCTCAAGAGACACATGTGCTACTGATCACCATTGGGTTGATCGTCTTGGGGGTTATGCTGGTCATAGGAGCCATAGTCATGTATCGCAAGAGGAGGACTAGGGAAGAGGCCATTTACCAAGATATGCCCCTGATGACAGTGAAGTCGCAGGATGGAGGAGATGGGGGGTACGAGGAGCTCCACAAAAAACATGGtaccaagagagagggagagtacgACACCCTGAACACAACTCCAGCACAAGCAGcaggaggagagaaaacagagggagcGTACGAAGCGCTGAAGAAAGcagaaggaaaggaggaggagtacCACACCTTGGAGGAAGGAGCGGCGAAAGGTGGGGATGGGGGGTATGAAGCGTTGAAAAAGTCCAAAGATGGGGGAACTGGGGATCTGTACCACACCTTGGGGGCGAAAGGTGGGGATGGAGGGCATGGGGGGTATGAAGCGTTGAAAAAGTCCAAAGATGAGGGAACTGGGGATCTGTACCACACCTTGGGGGCGAAAGGtggggatggaggggatggaggagatgaAGCATTGAAAAAGTCCCAAGATGGGGGAACTGAGGATTTGTCCCATGCTTTGGGGGCAGAAGGAGGcaaagagtgagatggagagtTTGAAGCATTGGAGAAGGCTAAAGAGGGGTATACCGATCTCTGGGagcagaaaggggagaggagaagtaGGCCTAAATCTGAGACTATAGCAAGTCCTGTAATGACAAGAGGAAAGGTGGGGTGTAGGATCGGTGGCGTAGCGCAGTTTTGCA

Function

NR:

description
uncharacterized protein LOC110491577 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565126.2 True 2113 mRNA 0.49 7 20461124 20469565

Neighbor

gene id symbol gene type direction distance location
LOC110491569 LOC106579243 coding downstream 94560 20353882 ~ 20366564 (-)
fam234a fam234a coding downstream 113633 20339109 ~ 20347491 (-)
LOC110491567 LOC106579249 coding downstream 127095 20330400 ~ 20334029 (-)
LOC110491568 NA coding downstream 174160 20285809 ~ 20286964 (-)
kcnj12a LOC106579252 coding downstream 293482 20153681 ~ 20167642 (-)
LOC110491584 cxb5 coding upstream 154323 20623888 ~ 20625318 (-)
znf668 znf668 coding upstream 156171 20625736 ~ 20629535 (-)
LOC110491585 NA coding upstream 170931 20640226 ~ 20650176 (-)
rnf40 rnf40 coding upstream 181800 20651365 ~ 20664781 (-)
ccdc189 ccdc189 coding upstream 209593 20679158 ~ 20681587 (-)
G1351859 NA non-coding downstream 35966 20424928 ~ 20425158 (-)
G1351854 NA non-coding downstream 43944 20416876 ~ 20417180 (-)
G1351852 NA non-coding downstream 45720 20415172 ~ 20415404 (-)
G1351848 NA non-coding downstream 56297 20404592 ~ 20404827 (-)
G1351844 LOC106579242 non-coding downstream 58874 20394582 ~ 20402250 (-)
G1351951 NA non-coding upstream 114454 20584019 ~ 20586755 (-)
G1351978 NA non-coding upstream 127580 20597145 ~ 20601057 (-)
G1351980 NA non-coding upstream 129719 20599284 ~ 20603628 (-)
G1351994 NA non-coding upstream 204383 20673948 ~ 20729877 (-)
G1351925 NA non-coding upstream 213383 20682948 ~ 20687423 (-)
LOC110491553 LOC106579383 other downstream 763466 19691616 ~ 19697840 (-)
G1349896 NA other downstream 999309 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 1136070 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1826719 18634031 ~ 18634405 (-)
h3f3d LOC107388308 other upstream 351134 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 739898 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 791499 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 1210864 21640601 ~ 21725046 (-)

Expression


Co-expression Network