LOC110491584 (cxb5)


Basic Information

Item Value
gene id LOC110491584
gene name cxb5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20623888 ~ 20625318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565140.2
ATGAAGTTCATGGAAATTCCTTTTAACGGTAAGTTGGCATCTCCTATTATTGCAGCAGCTTTATGTCAAATACACCAGGGAAATGTTTTGAAATTAAAGTATAGTTGTAACCAGATTTTAATATTTACTGTAATCTTACAACATTTCTTTTAACGTTGAATATTATTGCtgacaaaataaatgtttattgcTCTGCAATGCAAATATGTGAACATCTATCTTGATACATTGCCTGATGTGGTACCTTTCTTCTCTTGCTAGATCACTGCTACAGTAGTTTCATAACAAAGACGAGCGGAAATAATGGCAGCCATCGTAACAGGGCTCATCCCAATCCTCCGCACGGCAGtggacaccaccaccacctacaagTGCCGCTCGCTGTGGTTTGGCTTCCTCTGCATGCGCCTGGTGGTTCTGTTCGTGGCCGAGATGCCCTGGTTCAAGCTGGACTCGGACTTCAGCTGTAACACCACCCAGGACATGTGCACCCGAGGCTGCTTCAATCAACACTTTGACAAGCCTGTCATGGTGGCCTGGaacttcttcttcatcctcctcatcaTGTCTGTCCTCCTCATGGAGCTCTTTGCCTCCCACCTCCGCTCCGCTGCCCAGAAGAGGAGCTCCCGGCAGAGGAAAACTACCGGGGAGTTGGAGGCCCAGGGGAAGAGTGTCAGTGTGCCTGAATCTGAACCCCCAGGGAAGATGGTGATTGACCTCCACAAAGACAGGGGCACTGTGGGCTTCTATCTGCTCAGCACCGTGCTGCGTATTATGGTGGAGGTCTGGTTTGTCTATGTGCTTCTGTCCTGGAACCTACCTAAAGTAGATGAAGGACCATTCAAGTGTAAATCAGGTATCTGCCCAGAGATACATATTTGCTTGGTGAGGGCGGCACCAGAGAAACGTATGTCTATCTATGCTTTAGCCTCTGTTTCAGGCCTGGTCATTGTAACTTCTGTCTGGTTCTGTTTGTACTCTATTTTCCACTACCTCTGTAAATGTTAAGCCTGCAGGGAACCCATACTGCACTGTTTTAACTATAAATGTGTAATGTGTAGGTGTAACATTGGATTtactgttttcatttttttttaatcatgtgTCATGTCTGTGCCAGCTTAAAAGGCTAATAATGCTAAATAATCTGTCCAAGTTTCCTACATTTTCATTCTTGGCAGCAGTTTTTACTGTTCAAACTATGTTTATGGGTGTAGAAACACCTATCTGATGGTGTGTCTGAGTCAGGCATTTCTAGTGCTTTCTGGTCAGGGTGAAAATACATGCTAAGCTAGAGAAGgagtgatacagtgccttcagaaagtattcacaccacttgactttttccacattttgttgtgttacagcctgaatttaaaatgtagattttttttgtcactggcctaaacaAAATACctcataatatca

Function

NR:

description
gap junction beta-3 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565140.2 True 1431 mRNA 0.44 1 20623888 20625318

Neighbor

gene id symbol gene type direction distance location
LOC110491577 LOC106579241 coding downstream 154323 20461124 ~ 20469565 (-)
LOC110491569 LOC106579243 coding downstream 257324 20353882 ~ 20366564 (-)
fam234a fam234a coding downstream 276397 20339109 ~ 20347491 (-)
LOC110491567 LOC106579249 coding downstream 289859 20330400 ~ 20334029 (-)
LOC110491568 NA coding downstream 336924 20285809 ~ 20286964 (-)
znf668 znf668 coding upstream 418 20625736 ~ 20629535 (-)
LOC110491585 NA coding upstream 15178 20640226 ~ 20650176 (-)
rnf40 rnf40 coding upstream 26047 20651365 ~ 20664781 (-)
ccdc189 ccdc189 coding upstream 53840 20679158 ~ 20681587 (-)
ube2ib ube2i coding upstream 99117 20724435 ~ 20733606 (-)
G1351980 NA non-coding downstream 20260 20599284 ~ 20603628 (-)
G1351978 NA non-coding downstream 22831 20597145 ~ 20601057 (-)
G1351951 NA non-coding downstream 37133 20584019 ~ 20586755 (-)
G1351859 NA non-coding downstream 198730 20424928 ~ 20425158 (-)
G1351854 NA non-coding downstream 206708 20416876 ~ 20417180 (-)
G1351994 NA non-coding upstream 48630 20673948 ~ 20729877 (-)
G1351925 NA non-coding upstream 57630 20682948 ~ 20687423 (-)
G1352021 NA non-coding upstream 121311 20746629 ~ 20748225 (-)
G1352051 NA non-coding upstream 206327 20831645 ~ 20831870 (-)
G1352113 NA non-coding upstream 321960 20947278 ~ 20947694 (-)
LOC110491553 LOC106579383 other downstream 926230 19691616 ~ 19697840 (-)
G1349896 NA other downstream 1162073 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 1298834 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1989483 18634031 ~ 18634405 (-)
h3f3d LOC107388308 other upstream 195381 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 584145 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 635746 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 1055111 21640601 ~ 21725046 (-)

Expression


Co-expression Network