si:dkey-220f10.4 (LOC106579379)


Basic Information

Item Value
gene id si:dkey-220f10.4
gene name LOC106579379
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20681651 ~ 20688683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565150.2
ATGACACATTATGcaagtttttttttaatgcatttatgTTTCTTCTTACACATTAAACATGACTCTTTCAATGACTCAATGTTATTTATCACTGGTCAGCTCTGTCACCACTCACCAGTTCATACTGCATGTGCTATGCCATGGAGTTTAAGAACATTATCCCTCTTAATCCACTTTACCTTCTGTTGCATGCAGGTGCATATGCTTAtgtcagacagggagagagagatagaatgaaACACGTTTCATGTTTTTACGTTGAGaatctgtctgtgtgtattaGTTGTATTATTGGTCTGCAGGCTGAACATTTGTCCTGGTAAATCTATTTAGATAGTGTGGTATCTTCTCCTCAGCAGACGGTCATTAGCGGTCCTATTGGAGTGTTATTTACAGTACAATTACTTTAGCCATGGAGGACCCAGAATTGCGTCAACTAAAGCTGGACAATCAGCGTTCACTTTTGATGAAGAAGCAGCAGAGAAGGAGGGCCGATACCCAAATGGTCACAGCCAATAGGGACGCTCGACCCAAGAAAAGCAAGCAGAAGACTGGAGCAGATGACACAGACTTGTTGATTactcaatcccagagcaacaacTCCTTAAATGCTGAAGAAGCCCATGATAACCCACTGGAGGAAATTACTCTGGGAGAGCTCAGCCTAAAAACCACTGATGCTACAGATGAGATGCCCCCCGAGAAACCCATCATCGCCAAAACTATGGACGTGGAAATTGACAGCCAGCCAAAGCCTAAACTTAGTACAGAAAATGAAGGCCCAGCAGAagtgaaagagaaggagaagaaagagaaaggTGTGAAAAAGGAGAAGGCGCAAGCAAAACCAAGGTGCCAAATAAGTGACAATGAGAGGGAGGAAGATGAAATTcttgaaagagagaaaaaagagaaaactcaaaaaaagacaaaaaaagctGAGAAAGCCAATCTCGCACTGCTTAACTCCAACTACAGGCAGCAGGACACCTCAGACAGCGACGACAACATTGGAAGAgtgacAACTCCTGTCTCAGTTGAAGATCTTGAAAAGTTTGCCCTCCATCCAGCCCCTAGAGATACAACAATCCAGTGCAGAATCACTCGGGACAGGCGGGGCGTGGAGAAAGGAATGTACCCCACTTACTATCTCCATATGGAGAAGGAGGATGGGAAGAGGgTGTTTTTAATGGCaggcaggaagaggaagaagtgCAAAACCTCCAATTATCTCATTTCCATTGATCCAACAGAACTTTCCAGAGACACAGACAGTTATATAGGCAAACTAAGATCAAATGTGCTAGGCACCAAATTCACAGTGTTTGACGACGGGGATAACCCAGATAAGAAGCCTTTCGTCAAAGAGTGTGACTCAGTTCGGCAAGAGCTTGCCGCAATCTGTTATGAGAAGAATGTTCTAGGTTTCAAAGGCCCCAGGAAAATGACGGTGGTTATTCCTGGCATGATGGAGAATGATGAGAGAGTGTGCATTCGTCCAAAAAGTGATATAGAGTCTCTGCTCTCCCGCTATGAGAATGGTAACACTGACAACCTAGTGTGCCTCATGAACAAGTCCCCCAGCTGGAATGAACAGACACAGTCCTACGTGCTCAATTTCCACGGCCGAGTCACACAGGCCTCCGTCAAAAACTTCCAAATCGTTCACCCTGACAACGAGGACTACATTGTGATGCAGTTTGGTCGGGTGGCAGAGGACGTATTCTCCATGGACTATAGCTTCCCTATGTGTCCCCTGCAGGCCTTCGCCATCACGCTCTCCTCCTTCGATGGCAAACTGGCTTGTGAGTGATACCAAGTGTGGACAACTCAATCAAGCAGAAGCAGAGCCTTAATGGCTTACCATTACAGTTCTATCACAGTATTAATTGTCAATGTGCATTCCAGGTAGTATTGGATAAGTGTTTGATATTTTTCAACACCTGAGATTACAAAAAGTATTTTTTAGATTTTACGAAAAATACGTAACAACTAATCAACGTCATTGAGTATAGGTTATGATTCAGTCTCAATAAGGAACACATATTACTAAATGTTATCTGAAAAACAGCAACTGGGTCCTCTGAATTATATATTGTGCTTAGATGTCTGGTAGATGTAACCACTAGAATGACAATGTTGCACAGCATACCTGTTTTGTGCAGGCTGTTTGATcatatttgaactgaaacatttTTATAAGAAATATGTATAAGAAATATGTCCAATTcatttatttaatattgattgcAGTCTTAAGGCTCCGCTCCACATTATCAAAGTGTAACGTATTCATGTTTTCCATTTTTTTCTACATTCCACATAATCTCATATgtgcaatatacactgagtataccaaatattaggaacaccccCCCTGTTGCCCTCAGAACgccctcaattcgtcagggcatgggctctacaaggtgtggaaagcattcaacagggatgctggcccatgttgactccaa

Function

NR:

description
tubby protein-like

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565150.2 True 2471 mRNA 0.43 10 20681651 20688683

Neighbor

gene id symbol gene type direction distance location
phkg2 phkg2 coding upstream 2342 20665014 ~ 20679309 (+)
znf646 LOC106579233 coding upstream 42660 20629550 ~ 20638991 (+)
LOC110491581 LOC106579237 coding upstream 58586 20597779 ~ 20623065 (+)
LOC110491578 LOC106579238 coding upstream 92612 20571757 ~ 20589039 (+)
LOC110492850 LOC106579239 coding upstream 110600 20511389 ~ 20571051 (+)
LOC110492884 LOC106579378 coding downstream 20346 20709029 ~ 20713709 (+)
gnptg gnptg coding downstream 103340 20792023 ~ 20798137 (+)
LOC110491596 LOC106579223 coding downstream 114401 20803084 ~ 20809212 (+)
LOC110491597 gper1 coding downstream 122713 20811396 ~ 20814817 (+)
c16h16orf91 NA coding downstream 128739 20817422 ~ 20819054 (+)
G1350970 NA non-coding upstream 31563 20647415 ~ 20650088 (+)
G1350939 NA non-coding upstream 75604 20579174 ~ 20606047 (+)
G1350952 NA non-coding upstream 85370 20595866 ~ 20596281 (+)
G1350891 NA non-coding upstream 208547 20472879 ~ 20473104 (+)
G1350890 NA non-coding upstream 210236 20470971 ~ 20471415 (+)
G1351007 NA non-coding downstream 44839 20733522 ~ 20734122 (+)
G1350964 NA non-coding downstream 47539 20736222 ~ 20740894 (+)
G1350965 NA non-coding downstream 96955 20785638 ~ 20791850 (+)
anks3 anks3 non-coding downstream 142962 20826541 ~ 20831718 (+)
G1350275 NA other upstream 643673 20030730 ~ 20037978 (+)
G1350066 NA other upstream 943617 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 1539974 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 1921231 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 2126199 18555177 ~ 18555452 (+)
G1351274 NA other downstream 532082 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 713544 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 990541 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 1310674 21727617 ~ 22001169 (+)
G1353021 NA other downstream 1943196 22631879 ~ 22632305 (+)

Expression


Co-expression Network