Gene
RNA
| Item | Value |
|---|---|
| gene id | gnptg |
| gene name | gnptg |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 20792023 ~ 20798137 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gnptg | Predicted to enable transferase activity. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in glycoproteinosis and mucolipidosis III gamma. Orthologous to human GNPTG (N-acetylglucosamine-1-phosphate transferase subunit gamma). |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016740 | transferase activity | molecular_function |
| id | description |
|---|---|
| K10087 | GNPTG, GNPTAG; N-acetylglucosamine-1-phosphate transferase, gamma subunit |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001165061.2 | True | 1202 | mRNA | 0.44 | 11 | 20792023 | 20798137 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492884 | LOC106579378 | coding | upstream | 78314 | 20709029 ~ 20713709 (+) |
| si:dkey-220f10.4 | LOC106579379 | coding | upstream | 103340 | 20681651 ~ 20688683 (+) |
| LOC118939613 | NA | coding | upstream | 108107 | 20683788 ~ 20683916 (+) |
| phkg2 | phkg2 | coding | upstream | 112714 | 20665014 ~ 20679309 (+) |
| znf646 | LOC106579233 | coding | upstream | 153032 | 20629550 ~ 20638991 (+) |
| LOC110491596 | LOC106579223 | coding | downstream | 4947 | 20803084 ~ 20809212 (+) |
| LOC110491597 | gper1 | coding | downstream | 13259 | 20811396 ~ 20814817 (+) |
| c16h16orf91 | NA | coding | downstream | 19285 | 20817422 ~ 20819054 (+) |
| c16h8orf33 | LOC106579225 | coding | downstream | 25266 | 20823403 ~ 20826166 (+) |
| anks3 | anks3 | coding | downstream | 28404 | 20826541 ~ 20831718 (+) |
| G1350965 | NA | non-coding | upstream | 173 | 20785638 ~ 20791850 (+) |
| G1350964 | NA | non-coding | upstream | 51129 | 20736222 ~ 20740894 (+) |
| G1351007 | NA | non-coding | upstream | 57901 | 20733522 ~ 20734122 (+) |
| G1350970 | NA | non-coding | upstream | 141935 | 20647415 ~ 20650088 (+) |
| G1350939 | NA | non-coding | upstream | 185976 | 20579174 ~ 20606047 (+) |
| G1351047 | NA | non-coding | downstream | 47918 | 20846055 ~ 20846467 (+) |
| G1351072 | NA | non-coding | downstream | 135331 | 20933468 ~ 20933885 (+) |
| G1351104 | NA | non-coding | downstream | 159874 | 20958011 ~ 20958276 (+) |
| G1350275 | NA | other | upstream | 754045 | 20030730 ~ 20037978 (+) |
| G1350066 | NA | other | upstream | 1053989 | 19737162 ~ 19738034 (+) |
| LOC110491534 | LOC105006846 | other | upstream | 1650346 | 19138817 ~ 19141680 (+) |
| LOC110491516 | LOC106589273 | other | upstream | 2031603 | 18682058 ~ 18760420 (+) |
| G1348897 | LOC106579309 | other | upstream | 2236571 | 18555177 ~ 18555452 (+) |
| G1351274 | NA | other | downstream | 422628 | 21220765 ~ 21221147 (+) |
| G1351366 | LOC106579206 | other | downstream | 604090 | 21402227 ~ 21405117 (+) |
| G1351501 | LOC106579196 | other | downstream | 881087 | 21679224 ~ 21680881 (+) |
| LOC110491629 | LOC106579195 | other | downstream | 1201220 | 21727617 ~ 22001169 (+) |
| G1353021 | NA | other | downstream | 1833742 | 22631879 ~ 22632305 (+) |
