h3f3d (LOC107388308)


Basic Information

Item Value
gene id h3f3d
gene name LOC107388308
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20820699 ~ 20823171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565168.2
GCTTAACGAACAGTCACGGAAGCGGTTCAAGACGGCATTTGAAAAACAGTTAAACGTCTGTTTTGGTCACAGAGGTAGCTAGTGAAGATTTTATCTAAATTAATGCGAAGTCAAGTGAGCCATGGCACGTACTAAGCAGACCGCCCGTAAATCCACTGGCGGAAAAGCGCCCAGGAAACAGCTGGCCACCAAGGCTGCAAGGAAAAGCGCACCATCTACTGGCGGTGTGAAGAAGCCTCACAGATACAGGCCGGGTACAGTGGCTCTGAGAGAAATCCGTAGGTACCAGAAATCCACTGAGCTTCTGATCAGGAAGCTGCCCTTCCAGCGTCTGGTCCGTGAAATTGCCCAGGACTTCAAGACTGACCTCCGCTTCCAGAGTGCAGCCATTGGCGCTCTGCAGGAAGCCAGTGAAGCATACCTTGTTGGCCTGTTTGAGGACACCAACCTGTGTGCCATCCATGCCAAGAGGGTCACCATCATGCCCAAAGACATTCAGCTGGCCAGGCGAATCCGAGGCGAGCGTGCATAATATGAACACTTTTTGAACTCCCTCTTTGGAGGGTAACTAGGTGGGCGGGCATGGTTGGGGCTGTGTTTTCTCTGAACTATGAATTAGTATGTACTAGTTTCAATTAATTTTCTAATGTCTCATTGGTAGGATAAAGGCTTGTGATTTATAGTACAGAAGTAGCAAGTGTCTTGCCAAACATTCCTAACCTCTCAGGTTTTGAAAGTGTATTTTAGAAATGGTTGATACTTTCAGGTCATCTTGTAATGTGCATGAGTCATGTGGAGTAGAACTGTTTTAATCTCATTTTGGCCATTTATTGTAAATAAACTTTCCACTACCTCA
>XM_021565167.2
CAGGTCTACAAATCAGACAAAAAAAGTATAAATAGAATGTGCCGTTTCCGCTTAACGAACAGTCACGGAAGCGGTTCAAGACGGCATTTGAAAAACAGTTAAACGTCTGTTTTGGTCACAGAGAAGTCAAGTGAGCCATGGCACGTACTAAGCAGACCGCCCGTAAATCCACTGGCGGAAAAGCGCCCAGGAAACAGCTGGCCACCAAGGCTGCAAGGAAAAGCGCACCATCTACTGGCGGTGTGAAGAAGCCTCACAGATACAGGCCGGGTACAGTGGCTCTGAGAGAAATCCGTAGGTACCAGAAATCCACTGAGCTTCTGATCAGGAAGCTGCCCTTCCAGCGTCTGGTCCGTGAAATTGCCCAGGACTTCAAGACTGACCTCCGCTTCCAGAGTGCAGCCATTGGCGCTCTGCAGGAAGCCAGTGAAGCATACCTTGTTGGCCTGTTTGAGGACACCAACCTGTGTGCCATCCATGCCAAGAGGGTCACCATCATGCCCAAAGACATTCAGCTGGCCAGGCGAATCCGAGGCGAGCGTGCATAATATGAACACTTTTTGAACTCCCTCTTTGGAGGGTAACTAGGTGGGCGGGCATGGTTGGGGCTGTGTTTTCTCTGAACTATGAATTAGTATGTACTAGTTTCAATTAATTTTCTAATGTCTCATTGGTAGGATAAAGGCTTGTGATTTATAGTACAGAAGTAGCAAGTGTCTTGCCAAACATTCCTAACCTCTCAGGTTTTGAAAGTGTATTTTAGAAATGGTTGATACTTTCAGGTCATCTTGTAATGTGCATGAGTCATGTGGAGTAGAACTGTTTTAATCTCATTTTGGCCATTTATTGTAAATAAACTTTCCACTACCTCA
>TU1545462
GCTTAACGAACAGTCACGGAAGCGGTTCAAGACGGCATTTGAAAAACAGTTAAACGTCTGTTTTGGTCACAGAGAAGTCAAGTGAGCCATGGCACGTACTAAGCAGACCGCCCGTAAATCCACTGGCGGAAAAGCGCCCAGGAAACAGCTGGCCACCAAGGCTGCAAGGAAAAGCGCACCATCTACTGGCGGTGTGAAGAAGCCTCACAGATACAGGCCGGGTACAGTGGCTCTGAGAGAAATCCGTAGGTACCAGAAATCCACTGAGCTTCTGATCAGGAAGCTGCCCTTCCAGCGTCTGGTCCGTGAAATTGCCCAGGACTTCAAGACTGACCTCCGCTTCCAGAGTGCAGCCATTGGCGCTCTGCAGGCAACCAGTGAAGCATACCTTGTTGGCCTGTTTGAGGACACCAACCTGTGTGCCATCCATGCCAAGAGGGTCACCATCATGCCCAAAGACATTCAGCTGGCCAGGCGAATCCGAGGCGAGCGTGCATAATATGAACACTTTTTGAACTCCCTCTTTGGAGGGTAACTAGGTGGGCGGGCATGGTTGGGGCTGTGTTTTCTCTGAACTATGAATTAGTATGTACTAGTTTCAATTAATTTTCTAATGTCTCATTGGTAGGATAAAGGCTTGTGATTTATAGTACAGAAGTAGCAAGTGTCTTGCCAAACATTCCTAACCTCTCAGGTTTTGAAAGTGTATTTTAGAAATGGTTGATACTTTCAGGTCATCTTGTAATGTGCATGAGTCATGTGGAGTAGAACTGTTTTAATCTCATTTTGGCCATTTATTGTAAATAAACTTTCCACTACCTCATGTTTGGTTTATTACCCCCTCTATGGACATTCTGG
>TU1545463
GCTTAACGAACAGTCACGGAAGCGGTTCAAGACGGCATTTGAAAAACAGTTAAACGTCTGTTTTGGTCACAGAGGTAGCTAGTGAAGATTTTATCTAAATTAATGCGAAGTCAAGTGAGCCATGGCACGTACTAAGCAGACCGCCCGTAAATCCACTGGCGGAAAAGCGCCCAGGAAACAGCTGGCCACCAAGGCTGCAAGGAAAAGCGCACCATCTACTGGCGGTGTGAAGAAGCCTCACAGATACAGGCCGGGTACAGTGGCTCTGAGAGAAATCCGTAGGTACCAGAAATCCACTGAGCTTCTGATCAGGAAGCTGCCCTTCCAGCGTCTGGTCCGTGAAATTGCCCAGGACTTCAAGACTGACCTCCGCTTCCAGAGTGCAGCCATTGGCGCTCTGCAGGCAACCAGTGAAGCATACCTTGTTGGCCTGTTTGAGGACACCAACCTGTGTGCCATCCATGCCAAGAGGGTCACCATCATGCCCAAAGACATTCAGCTGGCCAGGCGAATCCGAGGCGAGCGTGCATAATATGAACACTTTTTGAACTCCCTCTTTGGAGGGTAACTAGGTGGGCGGGCATGGTTGGGGCTGTGTTTTCTCTGAACTATGAATTAGTATGTACTAGTTTCAATTAATTTTCTAATGTCTCATTGGTAGGATAAAGGCTTGTGATTTATAGTACAGAAGTAGCAAGTGTCTTGCCAAACATTCCTAACCTCTCAGGTTTTGAAAGTGTATTTTAGAAATGGTTGATACTTTCAGGTCATCTTGTAATGTGCATGAGTCATGTGGAGTAGAACTGTTTTAATCTCATTTTGGCCATTTATTGTAAATAAACTTTCCACTACCTCATGTTTGGTTTATTACCCCCTCTATGGACATTCTGG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565168.2 False 856 mRNA 0.47 4 20820734 20823122
XM_021565167.2 False 872 mRNA 0.47 4 20820734 20823171
TU1545462 False 858 TUCP 0.47 4 20820699 20823122
TU1545463 True 891 TUCP 0.46 4 20820699 20823122

Neighbor

gene id symbol gene type direction distance location
LOC110491600 cssa19h7orf50 coding downstream 3618 20799849 ~ 20817116 (-)
tsr3 tsr3 coding downstream 28856 20785617 ~ 20791878 (-)
pdpk1b LOC100380750 coding downstream 35881 20772918 ~ 20784853 (-)
kctd5b LOC106579229 coding downstream 48443 20738801 ~ 20772291 (-)
ube2ib ube2i coding downstream 87128 20724435 ~ 20733606 (-)
wdr24 wdr24 coding upstream 11449 20834620 ~ 20843246 (-)
rhbdl1 rhbdl1 coding upstream 29416 20852587 ~ 20905381 (-)
rhot2 rhot2 coding upstream 107731 20930902 ~ 20945172 (-)
LOC110491609 LOC106579377 coding upstream 135766 20958937 ~ 20968741 (-)
wdr90 wdr90 coding upstream 145684 20968855 ~ 21026598 (-)
G1352021 NA non-coding downstream 72509 20746629 ~ 20748225 (-)
G1351994 NA non-coding downstream 90857 20673948 ~ 20729877 (-)
G1351925 NA non-coding downstream 133311 20682948 ~ 20687423 (-)
G1351980 NA non-coding downstream 217106 20599284 ~ 20603628 (-)
G1351978 NA non-coding downstream 219677 20597145 ~ 20601057 (-)
G1352051 NA non-coding upstream 8474 20831645 ~ 20831870 (-)
G1352113 NA non-coding upstream 124107 20947278 ~ 20947694 (-)
G1352109 NA non-coding upstream 161116 20984287 ~ 20990147 (-)
G1352148 NA non-coding upstream 255718 21078889 ~ 21080096 (-)
G1352194 NA non-coding upstream 350834 21174005 ~ 21174314 (-)
LOC110491585 NA other downstream 174536 20640226 ~ 20650176 (-)
LOC110491567 LOC106579249 other downstream 487005 20330400 ~ 20334029 (-)
LOC110491553 LOC106579383 other downstream 1123076 19691616 ~ 19697840 (-)
G1349896 NA other downstream 1358919 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 1495680 19310970 ~ 19325094 (-)
G1352220 LOC106582599 other upstream 386292 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 437893 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 857258 21640601 ~ 21725046 (-)
G1352639 LOC106579195 other upstream 1176780 21999951 ~ 22001156 (-)
G1353298 NA other upstream 1815860 22639031 ~ 22639812 (-)

Expression


Co-expression Network