rhbdl1 (rhbdl1)


Basic Information

Item Value
gene id rhbdl1
gene name rhbdl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20852587 ~ 20905381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565172.2
agagagcgagagggagcagTCAGTGCtgtagggaggagggagagtgagtgaatgagagcTGCTGGATCTGCTGTTTGATTGTTATGCTGGGCTGCCTCCTTCCACACTGTACTGGCACAACAGAGTACCCTGCCACCACTACAGACGCTGCTGATTACTCTGCTAGTTAGCCACACTGCTAGCAGGAGAGCCAGGGGCCACCAGGAATCAGGCTAGCTGGGCTTCTCCATCCTTTGAGCAGGGGACGTAGCCACGTCGTGGAGTGGAGGGGGCTAACACTACTGTTTAGGTACCCGCTTCTACTTCATCCAAACATccctctccccaccaccaccaccagcagcagCCCGCTCGCTCCTCTCTATGCCCTTGTCCTCGGCGGCTCCTCTCAACTCCCTGGCCAGTATATGGATAGAAGCTCTCtgtttcagctcatacaagagcAGCTGGACCCAGACAACACCGGTTTCATTGCAGTGGAGAACTTCACCAGTCTGGTGGAGCACCATGAGCTGCAGCTGGACCCCTCCAAACTGGACATGCTGTTTGCACTGGTGCAGAGCAACGAGGATGGACAGGTGTGCTACCAGGAGCTCATCGAGCTGATGAGCAGCAAGCGCTCCAGCAGTTTCCGACGAGCCATCGCCAATGGCCGCCGCACACTGCAACGGGAGATCCTATTGGATGAGACGGGCCTGGGCGTGTACAAGCGCTTTGTGCGCTACGTGGCCTATGAGATCCTGCCCTGCGAGACAGACCGGCGCTGGTACTTCCACCAGAACAGCTTGTGTCCTCCTCCTGTCTTCATGGCCATCATTACCATCATCCAGATCGTTGTGTTCATGTGCTATGGCATCATGCTGAATAAGTGGGTACTGCAGACATACCAGCCAGACTTCATGAAGAGCTCCCTGGTGTACCACCCCAGACACCGCCTCCAGGTGTGGCGCTTCTTCAGCTACATGTTCATGCACGTTGGGTTGGAACAGCTGGGGTTCAACGCTCTTCTCCAGCTGATGATCGGCGTTCCCTTGGAGATGGTCCATGGCATCCTACGCATCAGTCTGCTCTACATGGCTGGTGTAGTGGCAGGTTCCCTGACTGTGTCCATCACAGACATGCGTGCTCCAGTGGTGGGGGGCTCCGGGGGTGTCTACGCTCTGTGCTCGGCGCATCTGGCCAACGTCGTCATGAACTGGGCCGGTATGCGGTGTCCATACAAGCTCCTCCGCATGATTCTGGCACTGGTGTGCATGAGTTCGGAGGTGGGCCGTGCCGTGTGGCTGCGCTTCTCCCCGCCCTTGCCCTCCTCGGGGCCCCAGCCCAGCTTCATGGCCCACCTGGCGGGGGCGGTGGTGGGCATCAGCATGGGCCTGCTCATCCTGCGCAGCTACGAGGAGAGCCTGCAGAAGCAGTGCTCCTGGTGGgtcatcctcttctccttcatcacCTTCCTTCTCTTCGCCATCTTCTGGAACATCTTTGCCTACGAGCTGCTGGGGGTGCAGCTTCCACCCGCTCCCTGACACCAAGaagctctctctcactccattacATTTTCCCTCTCACTGTCACATGTCAAGACCCAGCGCCTTCGCCATATCCTTTTCCTGTCCGCTCAGCCAACCTCCCCGGCAACACCATTCAAAACACAGGATGTTATTTAATTCAAAACTGTACAGAGCAGGAATAATTTTTCCCAATGTACCCATATCATCATAGAATGATCTCTGTTTTGTGGTGGGAGGGAATTTGGTAGCAATATATGCAGGTGAAAGATGTGTAGCTGTCTTTATATTCTCATTGTGGAGCATCCCTTTTGTCTTTTGTGTTGAAGCTTAACCCAGCTTCAGGCAGAACCTGTCAGAGAGCCATTATGAATAATACCATGCAGtgtcagctctcctctcctgttcagaGTGGGTTTATGACCCTTGAGGTGCTTCTTACTGGACAGATGTGTGTTCTGTCAGTATTCCTCACTGCCCCTTTTAAAGACATGAGGCAGAAGGACACCAATGTTCTACTGCTCAACATGCACCTAAACACTAGATCTACACTGTGGAATAAGAATAGGAATTCACAGGATTAGGTATTACATGTAACAAGGCATGCAGCTAGGAAGGTGGAAAAGACAGAGAAGAAAATAAATCAATGCTGAAACCGTGATATCCTATTTCCCCACCATCACCACTGTGGTGCTCATGTCCCTAGTAGCCATTGTCACTCTCATTTTCCACCCAACCTAAATGCTTCAGCAGGTTAGCATAATCTCTAGCAGTACCATACCCTAGCCTGCTAAAGCACCAGCATCTCATCTAGCCCATGCTCTAAGGTCCAAACTGAGACGTGTGCTCTTTACACCCCCACCAACCCGCACCCTTCTCCTGTGTCACCGTCTCCAAGAACAACCACTGCCTGATGCTGTAAGTCAGCGCGGGAACGCAAAGCGAGCGACACAGGCCTCTCTGTCTATTCTCACTCTAACAGACGGAACTAGGGAGGGCAACGGACATGTCATCATcgcctgacctctgaccttcgTGTCCCAGCGGGCATTGGGTTCAGTCTGTCAAAGCCCAGTCTATACCTCAGTGTCTCATTCTTAGGGACTGTATACTTTTGTAAAGGAATGTACACATAAAAAAAGGAGTGTTAATCATTTATTTCTGTTTCTTTCTTGTTTGGGAAAACAAAAGAAGAACATTTCAAATGGTGCAGACGAAATGCGATGATTGTTGTTCTTATGATATCTCCTACCATACAGCTTTGATCCTCTGAAAGTGATTCGACAGCAGACACCCCTGGTTACTATGATGAATGAACATCAATGAAGCAAGTTACACTCGTCTTTATAAATCTTAGTGCTTTACAGAGTAAGCCATAGAAGAACCCATTCGACGTAGAAATGGAAAACAAAGGCAGAGTGAAAACAGTCAGTGACTGTTTGCTGGTATATGCTTCGGTGAAATTTCTGCCGTGTGGTCCTCAATGGTAATGTCAAAGCTGATAATAACACGTGTCATATGAGTTATGTGGCAAATGAGACCGGATGACAAAGGCAAACTGTTTGTGCAAGAACATGCTTGAGAAACGCTGGACTGTCGCTCTCAGGCGACATTAGATATTTGTTGATAAACACATCTTAAAACCTTGGTTGCCAGATAGAATATTTAGACACACGTTACTACATGGTTGCCAGATTCTAAATCCCCCCCAGTGTGGTGATGCCTGACGACAGTATATTTTGGTTAATGACACATTTTGGATAGAGAAACCTGCCACAAATTAGCTCATTGACTGAATCAAGAAATTGCTAAGCTTTGACTAATCTTGAAATTCCATTCACTTATTTAATTTCTGTATACTTTTTTTCTTCAGTCTGTAGTCTATTTAATTTGGAAGGTGTCTTCTGACTGCTTTAGAAAACTTTTAGAGTTGCCAATGCTGTCAATTGGTCTCAGACATAATCCTCAGCATACATGATTATGTCACTGACAGAGGATACAGGCATACTGAGTGTGCCATAACGAATAACTTTATGAAAGGTGAATTCTATCTAAGAGGAGGATAATTGTGCCTCGTAGGCTAAAGAATCCATAGCACATTAACCCAGAAAAGGCATAGGGCTGATGAAAGGGCTATAAACTAAATACCGATGTTATTGTAAAACACATAAAAAACTgttaaaaggtccaatgcagccatttttatctcaatatcaaatcatttctggttaacaattaagtacctcactgtgattgttttaaaaatgtacttcttagcaaagagcaatatCTCAATAAACAATTTGGCTAGGACTGAGTGGGGagtggaaaactgaaaactagctgttattttCAGAGCGGTTCTTATGGGTCTATTAACGAATTgacgtcaccaggcaggccaaaactccatccgaccaaaacaggcagacatttcaggtggtcttttcaaacagctcttacactaaaaaggcattatcataattttcacagtattattccaacctcatagcgtGGAAATATGCTGCATATAAAACAAAGGAGAATGgggtttttgactgcactgggccttgaATAGGAACCTTCCAGGAAATTAAAACTAAACGACTAAAGGGGTGACAAAAGCTGATGTACAAGGTGCAAGCTTCTATCTCCCCACCCTTAAAAACGCACCAGGGTCTCAGTTCAAACAggctttttaattgtatttttaaatcactgtatgtctaataaatccctgtatgtgtttatttgatcAAAATAACTCAAAAGATATCTGTTTTATCATGTATTTCTCGGAGACTCTTTTTGCCATTGAAATGTGCGGGCGTGTCAATACgaatgtaaatatatttacatacacagccctgattggcGTATAGGATCTTCTAGACTCCAGAGCCTGCCCCGCTTACCCCTTCAAAGTAGGAagcatagagatcctattaaatgacTAATCCCTCAATGTTCCAGAAAGGCATGAAatggcagccattttggtcagggagaaatccaaaccagtctaattggaattaATGGCAGTAAAGGCATAGGTGATGTATTTTCTGCTTTTCcttatgcaggaaaataaaagtaaggcaTGTGATATCATAAAAGTTGTTTAATAGAAATACTgccatatacagtacatccagttgaagtcggaagtttacatacactgaggttggagtcattaaaactagtttttcaaccactccacaaattccttgttaacaaactatagtttatgcaagtcggtta

Function

symbol description
rhbdl1 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDL1 (rhomboid like 1).

NR:

description
rhomboid-related protein 1 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565172.2 True 4769 mRNA 0.46 8 20852587 20905381

Neighbor

gene id symbol gene type direction distance location
wdr24 wdr24 coding downstream 9341 20834620 ~ 20843246 (-)
h3f3d LOC107388308 coding downstream 29416 20820699 ~ 20823171 (-)
LOC110491600 cssa19h7orf50 coding downstream 35471 20799849 ~ 20817116 (-)
tsr3 tsr3 coding downstream 60709 20785617 ~ 20791878 (-)
pdpk1b LOC100380750 coding downstream 67734 20772918 ~ 20784853 (-)
rhot2 rhot2 coding upstream 25521 20930902 ~ 20945172 (-)
LOC110491609 LOC106579377 coding upstream 53556 20958937 ~ 20968741 (-)
wdr90 wdr90 coding upstream 63474 20968855 ~ 21026598 (-)
LOC110491613 LOC106579376 coding upstream 125000 21030381 ~ 21039963 (-)
nlrc3 nlrc3 coding upstream 176279 21081660 ~ 21105631 (-)
G1352051 NA non-coding downstream 20717 20831645 ~ 20831870 (-)
G1352021 NA non-coding downstream 104362 20746629 ~ 20748225 (-)
G1351994 NA non-coding downstream 122710 20673948 ~ 20729877 (-)
G1351925 NA non-coding downstream 165164 20682948 ~ 20687423 (-)
G1351980 NA non-coding downstream 248959 20599284 ~ 20603628 (-)
G1352113 NA non-coding upstream 41897 20947278 ~ 20947694 (-)
G1352109 NA non-coding upstream 78906 20984287 ~ 20990147 (-)
G1352148 NA non-coding upstream 173508 21078889 ~ 21080096 (-)
G1352194 NA non-coding upstream 268624 21174005 ~ 21174314 (-)
G1352195 NA non-coding upstream 269444 21174825 ~ 21175117 (-)
LOC110491585 NA other downstream 206389 20640226 ~ 20650176 (-)
LOC110491567 LOC106579249 other downstream 518858 20330400 ~ 20334029 (-)
LOC110491553 LOC106579383 other downstream 1154929 19691616 ~ 19697840 (-)
G1349896 NA other downstream 1390772 19461041 ~ 19461815 (-)
G1352220 LOC106582599 other upstream 304082 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 355683 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 775048 21640601 ~ 21725046 (-)
G1352639 LOC106579195 other upstream 1094570 21999951 ~ 22001156 (-)
G1353298 NA other upstream 1733650 22639031 ~ 22639812 (-)

Expression


Co-expression Network