rhot2 (rhot2)


Basic Information

Item Value
gene id rhot2
gene name rhot2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20930902 ~ 20945172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946478.1
ttcatTTAAGTATTGGGAAAATTAGAAAATGAAATCTGACATTGTGGAGTCAATAAATTGGTTGTGTGCTTGTTCTTTTTTTGCCTCAGGCTTATAGAGAGGCCATTCTTAAAACCTCTAACTAACTGTTGGTACACATGATATTGTTACAGTAGCTACAAGTTCGCCCACTCTACCGACGACAGTGGGCGCTATTTTTGGCTCTCTTGAACCGGAAGCCACTAGATTTCTCCTTGGGCGCTGCTAGCTAACTGGAGCTACTAGCTAGCTGGAATGGGTCCGAGAGGTAGCTAGCTACCTGAACTGCGGTTAAAAAGTCAAAATAATTTAGACGCATAAGACCCAGCAGAGTACACTCATTGGAAAAGGGAGCGAAACATGAAACGAGATGTCAGGATACTGTTATTGGGGGAACCCAAGGTGGGCAAAACATCACTCATCATGTCATTGGTTGGGGAGGAGTTTCCTGAGCATGTGCCCCTCCGAGCTGAGGAGATCACTATCCCTGCCGATGTCACTCCAGAGAAGGTGCCCACACACATAGTGGACTACTCAGAAACGGAACAGACTGATGAGGTCCTCAGAGAGGAGATTATCAAGGCCAACGTGGTGTGTGTGGTCTATGACGTCACCCAGGAGGAAACTATAGACAAGATCCGAACAAAATGGATCCCCTTGGTAAATGGTGAAGCAGAGAAGGGGAATAAAGTTCCCATAATCCTAGTGGGGAATAAATCGGACCTTCGCTCTGGGAGCTCCATGGAGACCATTCTACCTATCATGAACCAGTTTTCTGAGATTGAGACCTGTGTAGAGTGTTCTGCCAAGAACCTGAAGAACATCTCTGAACTGTTCTACTACGCTCAGAAGGCTGTGCTCCACCCCACCGCCCCGCTCTACGACCCGGAAGACAAACAGTTAAAGTCCATGTGTGTCCGAGCACTCAGCCGAGTCTTCAGCATCTCAGACCAGGACCATGACCGTATCCTCAGTGACACTGAACTCAACTGCTTCCAGAAATCGTGCTTCGGGAACCCTCTAGCCTCTCAAGCACTGGAGGACGTGAAGACTGTGGTGTGGAAGAACACGAGCGACGGGGTGCAGGACAACGGCCTTACCCTGAACGGCTTCCTGTTCCTCAACACGTTGTTCATCCAGAGGGGTCGGCACGAGACCACGTGGACCATCCTGAGGAAGTTTGGTTACGATGACTCGCTGGAGCTGACGGATGACTACCTATACCCACAGTTACGGGTGCCCGTGGGCTGCACCACCGAGCTCAATCATCTGGGTCACCAGTTTCTCCAGAGGCTGTTTGACAAGTATGACGAGGATAAGGACTCTGCCCTCTCTCCCGCGGAGCTCAAGAATCTCTTTAGTGTGTTTCCCTACATGCCCTGGGGCGCAGACGTGTACACGGCTGTCTCAACCACAGACGAGGGTTACATCTCCAATCATGGCTACGTGTGTCAATGGACGCTTTCAGCGTACCTTGATATCCATCGCTGTCTAGAGTACTTGGGATACCTGGGCTACCCTATTCTCACTGAGCAGGACTCCCAAACCACTGCAGTCACAGTGACGCGGGAGAAGGCTGTGGACCTGGAGAAGGGCCAGACTCAGCGGTCAGTGTTCCTTTGTAAGGTGATCGGGCCACGGGGTACTGGGAAGTCTGCCTTCCTCCAGGCCTTCCTTGGCCGAAACACAGCGagagaggAGCGTTCCACCGGTGCCTTTTCCCTATACACCATAAACACTGTCCAAGTTAGCAACCAGGAGAAGTTCCTCATACTCTACGAGGTGGACGTGGAAACAAAGTTCCTAAAGGAATCGGACGCGGTGTGTGACGTAGCCTGTCTCATGTATGATGTCAGCGACCCCCACTCCTTCGACTACTGTGCCAGCATCTACAAGCAACACTACATGGACAGCAGTATTCCCTGTGTGATGGTGGCCTCCAAAGCGGACCTCCCCGAGGTGAGACAGCTCCACGGGATGACTCCGGCAGAGTTCTGCTACAAACACCGACTGCCTCCGCCACTCCCCTTCTCCGGCCTGTCCCTGGACTCCACCAGCAAGAACATCTACACCAAGCTGGCCTGGGCCGCCATGTTCCCACACCTGAACGGCTCCGACATGAGCAACACATCCTTCTGGCTGAGAGTGACGCTAGGAGCAGCAGTGGTCGCGGTCCTAGGCTTTGCCATGTACAGAGCTTTCGCCCGACAGAAATGACTAGGGTCCTGACCGGAGCCCGCCTTCCCTCTTTTTCCCTCAACCCCAATCTCCAGACCAATCCTCCAGACCAAGCACCTAGACACACTAGACCAGACAGACAAAACACAGAAACATTTTACTTTGTCATGATTTATACCCTAACCTCCCCTCTCCTCGTCTTTGCTCTGCTCTTCCAGTCTACCCCAGTTAGTCACGTCTTCTTGACTGACTGTAATAATCTCAGTCAAAATGGAGGAGCGTGACcatatctctcaccctctcctgaCCACCTTTGCTCGCTCTGCCTTATGGTGTCAAAATCCAGGCTAAGGCGGTAGCCTCCCTGTGCGCAACGCAACGATTCCCCCAAGAGCTGCTACGAATATGTGGGTGCTTTATTAAATGGGGATATACATATACAAGAAGAGACATTTCAAACCCAAGACTTTTCCATGTGTCCACATGGTGTTCAGGAGAATGGATAGATTTATTTTTAATGTGTGGTCTTTCCTAAGGAAAATAATCTCAAAATGTAATAGCAATTTGGAAGAACATATCAAACTTTAAAAAGTCTGGTGCTGGTTAGAAACCAAAATGGCAAATTCAAACAGTCCATATCGcaaggggggggggtgaagacaaGCCTTAGAGCACAAGTTATGGAGGACCCTGCTGCAAGGACGTAACCGAGCAACAGACACTCTGAGCGGGCACAGGAAGTCCCCTGCAGAAGCTAAAGACTTGTCTTCCCATTGACCAAGCCACTGAGATAGACTTTCAGACCTGATTTGCCAAATACAGAAGCCGCTCTCTTACGGACCGTTCCAGTAAAATACATGCTTATCACTCCATTAGCTTCTGCTACAATACTACAGTTGTGGGTGAAATGATCTAGATACATTTATTTAtgtcaaaaataataacaatacaaaATAGCAGTAGTTGTGGCTTGCCAGATTAGAATTGAGAAGGAAACAATGTCTTGTTGAGAGAAGTGACTATATTGTATTAGACTGATGAAAAAGAAACACTGAACTCTGTAATGCATCCTCCTTACTCAAAGTAATCAGTCATGTTAAAACAGccaaatcatttttattttatggTGTTAATACTAAATCCTGCCCCGTGCAAATTAACGCTTTGAATGATCATTATAAGGAAAATATCTGCCTCCCCTTGTCTTGGCTTTTATGTGCATTCACCATAAATTGGAACTTAGGCCCCAAATGTTATTTCTGCTAAATcatccacgtgtgtgtgtgtgggtgcacatGTATATTTGCATGTGTGCATACATGGACCTGTGTGTCAAGATTTTGATTGTATAATTAATTAtcccttttatttttattttttttttaatatgggAATCATACATTTTTATTGGTTGGTTATTTTAGTTGGGGACCTGCTATTGCCACAGAAAAAAATGATGTGGATCTTATTGATTGAAAGTGATATAAAAACAACtaaagtgaaatgctgaataaaacaaAACAAGGATTGTTTACTGTTTTGCCAAACTTCTA

Function

symbol description
rhot2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including mitochondrial outer membrane permeabilization; mitochondrion transport along microtubule; and regulation of mitochondrion organization. Located in mitochondrion. Is expressed in female organism; fin bud; midbrain; muscle; and somite. Orthologous to human RHOT2 (ras homolog family member T2).

NR:

description
mitochondrial Rho GTPase 2

GO: NA

KEGG:

id description
K07871 RHOT2, ARHT2; mitochondrial Rho GTPase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946478.1 True 3749 mRNA 0.47 19 20930902 20945172

Neighbor

gene id symbol gene type direction distance location
rhbdl1 rhbdl1 coding downstream 25521 20852587 ~ 20905381 (-)
wdr24 wdr24 coding downstream 87656 20834620 ~ 20843246 (-)
h3f3d LOC107388308 coding downstream 107731 20820699 ~ 20823171 (-)
LOC110491600 cssa19h7orf50 coding downstream 113786 20799849 ~ 20817116 (-)
tsr3 tsr3 coding downstream 139024 20785617 ~ 20791878 (-)
LOC110491609 LOC106579377 coding upstream 13765 20958937 ~ 20968741 (-)
wdr90 wdr90 coding upstream 23683 20968855 ~ 21026598 (-)
LOC110491613 LOC106579376 coding upstream 85209 21030381 ~ 21039963 (-)
nlrc3 nlrc3 coding upstream 136488 21081660 ~ 21105631 (-)
si:ch211-183d21.1 LOC106579212 coding upstream 170605 21115777 ~ 21148343 (-)
G1352051 NA non-coding downstream 99032 20831645 ~ 20831870 (-)
G1352021 NA non-coding downstream 182677 20746629 ~ 20748225 (-)
G1351994 NA non-coding downstream 201025 20673948 ~ 20729877 (-)
G1351925 NA non-coding downstream 243479 20682948 ~ 20687423 (-)
G1351980 NA non-coding downstream 327274 20599284 ~ 20603628 (-)
G1352113 NA non-coding upstream 2106 20947278 ~ 20947694 (-)
G1352109 NA non-coding upstream 39115 20984287 ~ 20990147 (-)
G1352148 NA non-coding upstream 133717 21078889 ~ 21080096 (-)
G1352194 NA non-coding upstream 228833 21174005 ~ 21174314 (-)
G1352195 NA non-coding upstream 229653 21174825 ~ 21175117 (-)
LOC110491585 NA other downstream 284704 20640226 ~ 20650176 (-)
LOC110491567 LOC106579249 other downstream 597173 20330400 ~ 20334029 (-)
LOC110491553 LOC106579383 other downstream 1233244 19691616 ~ 19697840 (-)
G1349896 NA other downstream 1469087 19461041 ~ 19461815 (-)
G1352220 LOC106582599 other upstream 264291 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 315892 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 735257 21640601 ~ 21725046 (-)
G1352639 LOC106579195 other upstream 1054779 21999951 ~ 22001156 (-)
G1353298 NA other upstream 1693859 22639031 ~ 22639812 (-)

Expression

rhot2(rhot2) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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rhot2(rhot2) Expression in each Bioproject

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rhot2(rhot2) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network