cluap1 (cluap1)


Basic Information

Item Value
gene id cluap1
gene name cluap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21050726 ~ 21080107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565185.2
CATTAAAACCGCCAGGTTTGTCTCCTCTATGATTCCGTAGTATTGGATTCCATAGAGACGGGCAagcatattttttgttgttgccagaTAGCTAACAAGCTATACCTCATAGAAGAAGCTAACCAATCTAACACCCAAGATAAGGATCCAGAAGACTTCCTTGTGTGATTGAGTGCCACAACACGAACAAACGATGTCCTTTAGAGACTTACGAAATTTCACAGAAATGATGCGGGCTCTGGGCTATCCTCGCTTGATATCCATGGAGAACTTCAGGACCCCCAACTTTACCCTGGTGGCAGAAATTCTCATTTGGCTTGTGAAAAGATATGAACCGCAAATGGACATACCGAGTGACGTGGACACGGAGACAGACAGGATTTTCTTCATAAAGGCAGTGGCCCAATTTATGGCAACAAAGGCTCACATCAAGGTGAACACAAAGCGTCTGTACCAGGCTGATGGCTACGCTGTGAAAGAGATGTTGAAGATCACCTCAGTGCTGTACAGtgccatgaagaccaaggagatgGCCTCAGGGGACAAAGTGGAGGAGGACAATAGCAAATTCAAGTTTGACTTGGGTTCCAAGATTGCAGACCTGAAGGCAGCGAGGCAGCTGGCCTCGGAGATCACGTCTAAAGGAGCGTCGCTTTACGACCTGCTGGGGAAGGAGGTGGACCTGAGGGAGATGAGAACTGCTGCCATCTCCAGACCCTTGGAGATCAATGAGACAGAGAAGGCCCTCAGAGCAGCCATCAAGGAAGTTTTGGAAAGCGTGGATAAAACCAAAGACATGCTGAACAACGTGTCCTCAGATGAGACCAGTCTGGAATCCAAAATGGAGAAGAAGAAACAGGAGCTGGAGAGGAATCAGAAGAGACTCCAGACTCTACAGAGTGTACGGCCAGCATTCATGGATGAGTATGAAAAGATTGAGGAGGACCTGCAGAAGCAGTACGAGACCTACGTGGAGAAGTTCCGTAACCTGAGCTTCCTGGAGCAGCAGCTGGAGGACTACCATAGACTGGAGCAGGATAGGTTTGAGGAGACTGAGAACACCCTTAGGATGATGCAGCACAaactgagggaggaggagaggaggctgatgAGGAGTGGAGCCAAAGACGAGGACTCCGATATGGACATCCCTGAGGACGAGGGTTCAGACAGTGATATGGAGGATCGCAGACCCTCTAAACCCCGTCCCACCAGAAATGGCCCTATGACAGGGAGAGGCGGAGCGCGGCTCGTCGGCAACATGCAGGGTGGAGACAGCGAGGAGACAGAGGACAGCGAAATAGACGTGGACgaggatgatgatgacgatgaggaaggtgaggaggagaatgaggatcTGGAGGACGACAACGACAGTCTAGATGTCCCGGCGCCCAAGCCATCCCGTCCCTCCAGGGGACCCTTGAGGCCCCAGCTATTAGAGGAGAGCGATAACGACTTttaagctgacacacacacacacatccacccacactGTATTACAGCTCGTGAGCACTGAGGACAAACAAAACACTTTATTCCATATAACCTAATAATGTAATCATATAATAAACACTGTCCAATCTGA

Function

symbol description
cluap1 Acts upstream of or within cilium assembly; kidney development; and photoreceptor cell maintenance. Predicted to be located in cell projection and nucleus. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Orthologous to human CLUAP1 (clusterin associated protein 1).

NR:

description
clusterin-associated protein 1

GO: NA

KEGG:

id description
K19684 CLUAP1, DYF3; clusterin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565185.2 True 1588 mRNA 0.50 13 21050726 21080107
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491606 LOC106579217 coding upstream 125175 20924087 ~ 20925551 (+)
LOC118939519 NA coding upstream 162670 20885493 ~ 20888056 (+)
zgc:112496 LOC106579221 coding upstream 205035 20842992 ~ 20845691 (+)
anks3 anks3 coding upstream 219008 20826541 ~ 20831718 (+)
c16h8orf33 LOC106579225 coding upstream 224560 20823403 ~ 20826166 (+)
LOC110491616 rdh13 coding downstream 213423 21293530 ~ 21299993 (+)
decr2 decr2 coding downstream 220854 21300961 ~ 21306119 (+)
rab11fip3 rab11fip3 coding downstream 227645 21307752 ~ 21351756 (+)
ift140 ift140 coding downstream 294997 21375104 ~ 21430347 (+)
ccdc78 ccdc78 coding downstream 351059 21431166 ~ 21443552 (+)
G1351104 NA non-coding upstream 92450 20958011 ~ 20958276 (+)
G1351072 NA non-coding upstream 116841 20933468 ~ 20933885 (+)
G1351047 NA non-coding upstream 204259 20846055 ~ 20846467 (+)
c16h16orf91 NA non-coding upstream 231672 20817422 ~ 20819054 (+)
G1351232 NA non-coding downstream 74635 21154742 ~ 21154962 (+)
G1351246 NA non-coding downstream 93898 21174005 ~ 21174314 (+)
G1351269 NA non-coding downstream 126278 21206385 ~ 21206612 (+)
G1351271 NA non-coding downstream 134150 21214257 ~ 21214521 (+)
G1351275 NA non-coding downstream 142626 21222733 ~ 21223064 (+)
G1350275 NA other upstream 1012748 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1312692 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 1909049 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 2290306 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 2495274 18555177 ~ 18555452 (+)
G1351274 NA other downstream 140658 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 322120 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 599117 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 919250 21727617 ~ 22001169 (+)
G1353021 NA other downstream 1551772 22631879 ~ 22632305 (+)

Expression

cluap1(cluap1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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cluap1(cluap1) Expression in each Bioproject

Bar chart with 21 bars.
cluap1(cluap1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network