ift140 (ift140)


Basic Information

Item Value
gene id ift140
gene name ift140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21375104 ~ 21430347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565195.2
agaagaagaagaagaactcaTCCTTGCCCACCCTTTCCGATGAGGTTGTCGGGGTAACTAGAAAGGACGCTTTTATCCCTCACACCGCAGCAGAGCAAAACCACAACAGTGGACAGTTGCCATTTATGTTGTTACGACTATTGACCATTTTTTTGGACTGCACATAGCTAGAAGAAAGCTTTTCAGATAAGGCAGCACTGGGGACATGGCGGTGTACTTTGATCACCGTATCGAGGCCCCTGAGTCAAGCGGGGGCCCCTCTCAGGTGGCATGGCATCCCACTCAGCCTGTACTAGCAGTGGCCTCCAACAGCCCCACCACCGGGGGCAACATCGACCTTTACCTCCAACAGGGGGAGCACGTAGGGAGCTGCCATGTGGACCGTCCCTTCCAGCCCACGGTGCTGTGTTGGCACCCCACCAAGCCTCTGCTGGCTCTGGGCTGGGAGACAGGCGAGGTGCTGCTGCTCACACACCCCTCTGGAGAGCAGACGCCGCTGCCCGCCACACATACTGCCTGCATCACCCTGCTGGAGTGGAGCAGCTCCGGCAGCCGCCTGATCACCGGGGATCAGATGGGAGTTCTCGCGTTATGGAAGGTGGACGCCCGAGGAAGACTACAGGGAAGTCACATAGTGAAGCACGACTACACCAAGCCCTTAACCTACTGTATCTTCAGACCAGCACCCCCGGGAGAGGATGTGGCGATGCTGGCGCGGGCGGCAGTGGGCGGGGACGAGAGTGCCCTGGACATGTTCAACTGGAGGAAGGCTGGGAATGGACCGCCGCTCAAGATGGGTCCTCAGGAGGGTCTGGTGTTCTACGTCGGCACGGCAGACGGCAAGGTGCACTGTGTGGATGAGCATGGCAGGAGTAGCCCAGTGCTCAGTGTGGATGGCTCCATCCAGAAGCTTTTCtatctgaagaggagagaagtCCTGGCCGTTGTCACGGAAACCCTTTTGCTGTCACAGTACACTCTGGGACCTGAGGGGGGAGCCCAGGAGCTCATGAAGGTGAAGCTGAGTGGAAAAAGTGGCCAAAGCGCAGACATCGTTTCAACAGAGACAGGCCTCCTCATCACAGCTACAGGGGAACAGGTCATCAgGCTCTGGGACTTGGAGAGGGATGACAACTATGTGCTTTCTCTGGATGAGAGCCTTGGCTTTGAGAAAGGAGAGGTGTTGAACTGTGTCTCCTACTGCACAGCCAAAGAGATCCTAGCTGCAGGCACCAACAGGGGGCGTATAGCTCTGTGGAGAATGGTGAGCCAGCCCAACACCAGGACAGACACCAAGGCCCAGTGGAAACTACAGACACCCACGGAGATCGAGGGCAATGTCACCCAGCTCCAGTGGGGCTCCAACCTGAACCTGCTGGCTGCCAACAGTGTGACCACAGTGCTGATCCTCTGTGAGCACATCATGTCTGCCCACTTCGGCCAGCAGGTGGCAGCGGTACAGCTAACCCCATCTCAGCTCAGCCTCACAATGTTCAACACCAACTCCCACCTCACCCTGCGTTCCGACATGCACATCAAGGGTGTCTGCGTCACCAAGGGCACAGTCACAGTGTGGAACGGGAAGCAGGTCACTGTGTACGAACCCTCGGGGGCAACTCTACGCAACACAGGCTCTTTCCTGTGTGAGTCCCAGGTCTTAGCTGTGCATGATGAGAATATCTACACTGTGGAGCCCAATAGAGTCCAGGTTCGCACACCACAGGGCACAGTGAAGCAGCTACTAGCCTTCTCTGAGGCCGAGGGCAACCCtgtgctgctcagtgtgtgtcAGGGCTACCTGGTGGTGGGAACAGACACAGCTCACATCAAGGTCTTTGACCTCACTCGCAGagaaGCCAAGGCCCACTGCAGTGCTAAGAACCTAGTGGACCTGACCCCTAATCTGGGAGCCCTGAAATCGGTCAAGTGTAACGCCAACGGCAACCAAGTCAGCATCCTGGTCACTCAGGTGAATGGGAGACCTGACCACAGAATGTACTTCTATGACGTAGAGATGGACACACTCTCTCACTTTGACTTCTTCACTGGTAGACCGCCTAGTGGCATCTCACAGGCCGACGACACAGaaagacggCCACTGACAGAGCTGAGCGAGAGATGTCCTGTGTCTCATTTCTGGGACGAGAACGAGCCtcgtctgtttgtgtgtgagacgGTACTGGTCAGCTCTCCCCAAATGGACCATCTGGACAGGGTGGATGTGCTCGTGGTGACGTTTTTCTGCACTCAGGAACATGGGCTCCTCCTGCAGGACTCCTACCCCAAACCAGCCGGCCTGCAGGCCCTACTGGCCCTGGACGTTCCCTACTACTACTTCACCTGTAAGCCAGGTGAGAGGGATCCAGGGACGGAGGAGGCCCAAGCTCCAGACCCCACCCAATCTCCATCCCTGGCCCAGGCCTCAGCCCCGGCTGCCCAGTCCCCCCACATGGTATCCAGACGAGCCCTCCGGGACTTTCAGGGCCTGGAGAACTGTGAAAAGGCCACCCGCGATGCCATGCTCAACTTTAGCTTCTACCTGACCATCGGAAACATGGACGAGGCCTTCAAGTCCATCAAGCTCATCAAGAGtgaggCAGTATGGGAGAACATGGCGAGGATGTGTGTGAAGAACCGGCGTCTGGACGTGGCACGGGTGTGTCTGGGCAACATGGGTAATGCCAGGGCGGCACGGGCGCTACGGGAGGCCGAGGCCGAGCCTGAACTGGAAGCCAGGGTAGCAGTACTGGCCCTTCAACTGGGCATGCTGGAGGATGCAGAGAAGCTGTATAAGAGCTGCGGCCGCTTCGACCTCCTGAACAAGTTCTACCAGGCATCTGGCCAGTGGCAGCAGGCCGTGGAGACAGCAGAGACCCACGACCGTATCCATCTCAGGACCACTTACTACAGCTATGCCAAATACCTGGAGGCCATCGGAGACAAGAGCATGGCCCTCGTGTTCTTTGAGAAGTCTGACACCCACCGGTTCGAGGTACCCAGGATGCTCCTAGATGATGCACTGTCTCTGGAGATCtatgtcaacaaaatgaaggacaAAAATATCTATAAGTGGTGGGCTCAGTATCTGGAGAGCCAGTCAGACATGGAGTCAGCACTACGCTACTACGAATACGCACAGgacttcctctctctggtccgCGTGCACTGCTACCTGGGGAACATTCAGAAGGCGTCGGAGATAGCCAATGAGACGGGGAACCGTGCTGCCTCGTACCACCTAGCCCGGCAATATGAGAGTCAGGAGGAGATCAAACAGTCTGTCCACTTCTACACACGAGCTCAGGCCTACAACAACGCCATCCGTCTCTGCAAGGAGAATGGTCTGGATGACCAGCTGATGAACCTGGCTCTCCTCAGTAACCCAGAGGACATGATGGAGGCTGCCTGTTATTACGAGGAAAAGGGTTCTCATATGGACCGTGCTGTCATGCTCTACCACAAGGCTGGTCATTTCTCCAAGGCTCTGGAGGTGGCCTTTGCTACAGAACAGTTCGCTGCACTGCAACTCATAGCAGAGGACCTGGATGAGACATCTGACCCGGCCCTGCTGGCCCGCTGCTCTGACTTCTTCATCAAACACGGCCAGTATGAGAAGGCTGTGGAGCTGCTTGTGGCCGCCAAGAAGTACCACGAGGCCCTGCAGCTGTGTCTGGACCAGAGCCTGACCATCACCGAGGACCTGGCTGAGAGTATGACCGTGACCAAGGAGTCCAAAGACCTCTCAGAGGAGGCCCGCAAAGAGCTGCTGGAGAGAATAGCTGACTGCTGCATGCGCCAGGGCAACTACCACCTAGCCACCAAGAAATACACACAGGCTGGCAACAAGCTAAAAGCCATGCGGGCGCTCCTGAAGTCAGGGGACACAGAGAAGATAGTGTTCTTCGCTGGCGTGTCACGTCAGAAGGAGATCTACATCATGGCCGCCAACTACTTGCAGTCTCTGGACTGGCGGAAAGATCCGGAAATCATGAAGAACATTATTAGCTTCTACTCCAAAGGCAGGGCTCTGGACCTGCTAGCTGGCTTCTATGAAGCTTGTGCTCAGGTGGAGATAGATGATTACCAGAACTATGAGAAGGCACTGGGTGCTCTGACGGAGGCCTATAAGTGCCTTTCTAAAGCTAAGGGCCACAGCCCAGACGAACACGAGGCTCGCATGGCTGAGCTGCAGCACAAGATCACTCTGGTCAAGAGGTTTGTCCAGGCACGCAGGTTGTATGAGGAGGACCCAGGGGAGGCGGTGCGTCTGTGCGAAGCCCTGCTAGAAGAGCTAGACCTGGACCCTGCTGTCAGGATAGGAGATGCATACGGCTTCCTGGTGGAGCATCACTGTCAGCGGGGCAGCTTCCAGGTGGCCTACCGCAAGCTGGAGGATCTGCAGAAGCTGCTGCCCTCTCTGAACATCAGCTACTACGTGAGCCAGGGCAGCCTGGATGCCCTGCAGAGGGCAGTGGGTGTACCCCTGGGCCGGGGGCAGCTCTCAGGCAGGGGAGACCGACGCGACAGCgggggagaggaggacgaggTGGAGGAGGACGAAGCCCTGGTGTCCCACCAAGGGGACTGAGGGCTGGGACACAACCCTGGTCTTGTGGGGGCAAGAGGGTGTGCACGGTGTTGTTGTAGCCCACAGCTGtctaacctgattcagctaatcACGGTCTTGATGAGcagttgattagttgaatcagagTTCTAGGCTGGGACAAAAGCTTGCATATACTGCAGCCCTGCAAAAACAGGAATAAAGAACGCCTCACTAAAGCCACAGAGACTTCTAAACTAGGACTAGAAAGACAAGGTGGCCTGATTCTATGGCCCTTTCATACAGGGTAAAAACCTAACAAGTTGCACCCTCCAAGAGGATGGTTAGTATACTCGGTGCAGAGTATAATGTTACACCCGATGGATCACAGTATACACACAGAGTATATTTATGGTAGAtgaaattcaaaatatatttaccATACAAATAAGTTGGATTTCAGATATTTTTTACACTAATAAGCCTTTACTTCCATTTGACTGAAAGGAAAAATACATTGCTATACCTTGCACAACTATACAATATTTGTTCTGCTGATGCCGTTTAGCTTTTTCCTCATGCAGAATGTTCTCTTTCAACGCAAAATAAAGCCGCTTTTGGATCTGAAAGTTGTGTGCATCTTGGACCTAAACCGTCCTGAAATTGAAACACCAATGTTTTctttacctgaaatgcattttGTATTTGTGGTCAGAGTTTGTACATTTCACTGAATGTGGTTTGTGTCGTGTGTATTGATAGTGTTTTGTACATTTCTGTGAGTTAAATTGAAATCTTTGAGATATTTTGCAAAGTAATCTGTACAGTATTTTAccatttttaaataaaatgtttatacCTTT

Function

symbol description
ift140 Predicted to be involved in intraciliary retrograde transport. Predicted to be part of intraciliary transport particle A. Predicted to be active in axoneme and ciliary basal body. Human ortholog(s) of this gene implicated in retinitis pigmentosa and short-rib thoracic dysplasia 9 with or without polydactyly. Orthologous to human IFT140 (intraflagellar transport 140).

NR:

description
intraflagellar transport protein 140 homolog

GO: NA

KEGG:

id description
K19672 IFT140; intraflagellar transport protein 140

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565195.2 True 5409 mRNA 0.54 30 21375104 21430347

Neighbor

gene id symbol gene type direction distance location
rab11fip3 rab11fip3 coding upstream 23348 21307752 ~ 21351756 (+)
decr2 decr2 coding upstream 68985 21300961 ~ 21306119 (+)
LOC110491616 rdh13 coding upstream 75111 21293530 ~ 21299993 (+)
cluap1 cluap1 coding upstream 294997 21050726 ~ 21080107 (+)
LOC110491606 LOC106579217 coding upstream 449553 20924087 ~ 20925551 (+)
ccdc78 ccdc78 coding downstream 819 21431166 ~ 21443552 (+)
LOC110492885 LOC106579374 coding downstream 177550 21607897 ~ 21608814 (+)
LOC110492851 LOC106579353 coding downstream 179446 21609793 ~ 21610638 (+)
LOC110491629 LOC106579195 coding downstream 297270 21727617 ~ 22001169 (+)
nog2 LOC106579194 coding downstream 604276 22034623 ~ 22037243 (+)
G1351318 NA non-coding upstream 86754 21287565 ~ 21288350 (+)
G1351316 NA non-coding upstream 91316 21283556 ~ 21283788 (+)
G1351309 NA non-coding upstream 100731 21268234 ~ 21274373 (+)
G1351306 NA non-coding upstream 111384 21263399 ~ 21263720 (+)
G1351294 NA non-coding upstream 123927 21248451 ~ 21251177 (+)
G1351401 NA non-coding downstream 135921 21566268 ~ 21566447 (+)
G1351443 NA non-coding downstream 144667 21575014 ~ 21575231 (+)
G1351451 NA non-coding downstream 153653 21584000 ~ 21584319 (+)
G1351460 NA non-coding downstream 166295 21596642 ~ 21597102 (+)
G1351461 NA non-coding downstream 167564 21597911 ~ 21598110 (+)
G1351274 NA other upstream 153957 21220765 ~ 21221147 (+)
G1350275 NA other upstream 1337126 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1637070 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 2233427 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 2614684 18682058 ~ 18760420 (+)
G1351501 LOC106579196 other downstream 248877 21679224 ~ 21680881 (+)
G1353021 NA other downstream 1201532 22631879 ~ 22632305 (+)
G1353519 NA other downstream 1614922 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 1693512 23123859 ~ 23134383 (+)

Expression


Co-expression Network