ccdc78 (ccdc78)


Basic Information

Item Value
gene id ccdc78
gene name ccdc78
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 21431166 ~ 21443552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565196.2
CCCGGCTTGTGCTCAAGAGTTTCTCAGGCTGTGAGCTTTGAACTATTTgagacaaaataacaaaaatctAAAACATTAATAAATACATACAATCCATTACATTTGATAAATATAGCTCCTATTCGTCGAAAAACTGTTTTTAATGTCGTCTATTTCGGCCAGGTGCAAGTTTAGGGTCCATGGCAACAACCAATGTTGTAGATACAAGAAACTTTCTCCTAACTCTGGAACTTGGGATAATTCATTTGTTTGGTATTAGAAACATGGACTTAAGGGACAACCGTTCGTCTttaaatgaactacaggacaaaattcGTTGTTTGACAGATGAAAATGTCCAGCTCCGTGACAAAAATGAAAGCCACTTTACCAAACTGGGCTACCTTGAGAGCAGGTTGGGCTATCTTGCAGGCTCCAAGACTGACCTCTCTTCCAAACTGGTCTCAAGCGAAGAGGAGAAACTGAAGATATCCAAGGAGCTTGTCGAGGTACATATACAGACCAACAAAGTGAGGGAGCAGTATGAAAAGGACATTTTTGACCTGAAAATAAAGATCCTATCCCAGGAAGGTGTGGtggtggagatggagatggagagggacaggcTCTGCAGGGAGCTCCAGTCTGTCACCGGCCGCCTACGGGTGGTAGAGAGGACAGGAAGTGACCTCACAGAGGAATACATGACCCTGAAGAGGAACTACCTGGCTCTGACTGAGGCCCACAATAAGGAGGTGGTCCAGAATGACGAGCTTAGCGCTGAGCTGCTTGGGCTGGCCCAGGCTCGTGATGACCTCTTCAGGCAGACAGAGGAACAGCAGCAGCGTGTTAGGgcctctacagagggtggtgtctATGGGCAGGCTGCTCAGGAGCTGGACAGGGTACGGGCGCTGGTCAGCCGTATGTCTCACAATAGAGTAATGccagaGGACCTGGCTATGTTGGACCAAGAACATAAATCTATGGAGAAGAGTCTGCTTGGGAACCAGGATGTGATCAAAGACATGCTGGAGCAGATGAAGAAGAGCTATGAAGAGCAGCAGCACAGACTAGAGGAGAAAGTGGTGGCGATGGGCAAGGAGCAACAAGAGAACAAGAGAGCCATCCGCGATACCCAGCAGAAACTAGCCGAACAGAGTGCGGCCATGTTGAGCTCTCAGAGCCAGCtgaaggaggtggaggaagagaacTCTAAGCTACAAATGCAGGTGAAGGAACTGAATGAGGAGTACCGTGCCAGACTGGGATGCTACCTACAGGACCTAGCTGAGTATGTGGATGGTCTGGCAGAGGGGAGGGGGGTGAAGGGCCCCCCAGAGAGGGTGAAGATGAGGGGCTTCGTGGACAGCATGCTCCAAGAGGTGCGCTCCTCCTACAGGGCTAGAGAGGAGCAGCTAGCCTCTGCCGCACGCTCCTACAAGAAGAGACTGCAGAGGCTCACTAAGAGCCACCAAGCCCTGCTTAGCGCATACAGGGTGCAGAGGGAACAGGTCCTGTCCCAGCCAGAGAGTGGCTTGGACCCCGGCCCCCCTGAGGCCCACTTCAGCCTGGAGTCCAGTGAGCtgaggggagagatggaaagggagctCCAGCTCCTACGCCAGGACAAGGCCAGGCTGGAGGGCCAGCTCCGAGAGGCTGAGAAGCCTGTGGCTGTCGTCACTAGACCTATTCAAACAGTCAACTTTCAGGATTCTGGAAAATCAGGGCAGATATCTGAAGAGGCCTGGACTGATATTAGGAAACAGCTACGGGAGATCACCAACTCTACTCAGGAGGGCCATGAGAGGGAGCGTGCCCAGCTCATCACTAGGGCTACAGTTGCCGAGGAGCAGCTGTTAGAGCTGCAGGAGTATGTTGACAAGCACCTGGGAAGGTACAAGCAGGAGATCACACGGCTGCGTAGACTGCTGGGTCTGGAGACGGGGCTTGCCCACAGAGCAGAGGCTCCCAAACCCCGCCAATCCATCGCTCGATCAAGAATCCAAGCTATGAAATATGATCTTCCACCCCCCTAAAAAAACAATACAACACATGAACCCTTGCTTTGGTATCTAACCATATGTATGAAATCTGTGCCAGTCAGAATATTCCTCAAAGAATAACATGATTGGCTACTATGACATAATAATGGACTCCATGGAAAGGCATTTGTTTCAATATAGCTTTTTATTATCATTTATAAAATAACAGTTCCTCACTTCATCAACATGACTGTAATATGATGAGGCCGAATTTTAAAGATCTCACTGAAATTCAATTATTTTTAGAACAGGTCTGCATGTCCACTTTGATATTTAgcgtacacatacatgttattggagagcaaggaggagaaagagagagaacaagggggGGCAGGAGGAATAATTGGTTGGATGAGAAGACGTTGTGGGGTGAGAAAGCAGCCATACGTGGTGCTTGAAGTGGATTAAAATAGGAGCCAGTACTCACTCTTTATATTTGGAGCCAATATAAACACCAATATAAGAGGTGCCGGTACTCAAGTAGTAGAACAATTGACCTGACACTTCTGTGAGAGAGAATGGGATAAAGACAAATAGATCTTAGTTTGGAAATGCTAAGATGGAGTCTATATAACCAGCGTTAAAAGCAACTCATTCACATAGAGAAATTAAGGAGATCAAGAGAAGATTATAGAGCTACTGTATTAGTGCTTATTGTTTCACTATAAATAAACTACACTAACTTTTTCTGCAA

Function

symbol description
ccdc78 Acts upstream of or within skeletal muscle fiber development. Human ortholog(s) of this gene implicated in centronuclear myopathy 4. Orthologous to human CCDC78 (coiled-coil domain containing 78).

NR:

description
coiled-coil domain-containing protein 78 isoform X1

GO: NA

KEGG:

id description
K23693 CCDC78; coiled-coil domain-containing protein 78

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565196.2 True 2724 mRNA 0.48 14 21431166 21443552

Neighbor

gene id symbol gene type direction distance location
ift140 ift140 coding upstream 819 21375104 ~ 21430347 (+)
rab11fip3 rab11fip3 coding upstream 79410 21307752 ~ 21351756 (+)
decr2 decr2 coding upstream 125047 21300961 ~ 21306119 (+)
LOC110491616 rdh13 coding upstream 131173 21293530 ~ 21299993 (+)
cluap1 cluap1 coding upstream 351059 21050726 ~ 21080107 (+)
LOC110492885 LOC106579374 coding downstream 164345 21607897 ~ 21608814 (+)
LOC110492851 LOC106579353 coding downstream 166241 21609793 ~ 21610638 (+)
LOC110491629 LOC106579195 coding downstream 284065 21727617 ~ 22001169 (+)
nog2 LOC106579194 coding downstream 591071 22034623 ~ 22037243 (+)
ntn2 LOC106579193 coding downstream 637556 22081108 ~ 22144284 (+)
G1351318 NA non-coding upstream 142816 21287565 ~ 21288350 (+)
G1351316 NA non-coding upstream 147378 21283556 ~ 21283788 (+)
G1351309 NA non-coding upstream 156793 21268234 ~ 21274373 (+)
G1351306 NA non-coding upstream 167446 21263399 ~ 21263720 (+)
G1351294 NA non-coding upstream 179989 21248451 ~ 21251177 (+)
G1351401 NA non-coding downstream 122716 21566268 ~ 21566447 (+)
G1351443 NA non-coding downstream 131462 21575014 ~ 21575231 (+)
G1351451 NA non-coding downstream 140448 21584000 ~ 21584319 (+)
G1351460 NA non-coding downstream 153090 21596642 ~ 21597102 (+)
G1351461 NA non-coding downstream 154359 21597911 ~ 21598110 (+)
G1351366 LOC106579206 other upstream 26049 21402227 ~ 21405117 (+)
G1351274 NA other upstream 210019 21220765 ~ 21221147 (+)
G1350275 NA other upstream 1393188 20030730 ~ 20037978 (+)
G1350066 NA other upstream 1693132 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 2289489 19138817 ~ 19141680 (+)
G1351501 LOC106579196 other downstream 235672 21679224 ~ 21680881 (+)
G1353021 NA other downstream 1188327 22631879 ~ 22632305 (+)
G1353519 NA other downstream 1601717 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 1680307 23123859 ~ 23134383 (+)

Expression


Co-expression Network