LOC110491641 (LOC106579184)


Basic Information

Item Value
gene id LOC110491641
gene name LOC106579184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22478166 ~ 22495374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565237.2
TCTTTGGGAAGATTATTGAGTGAGCGCAAACAGGATATTGCTGTCATCTGTCAACAAAGCAGAAACTTATCTTTAGATGTTTTAGTCTATTCAAATCAACTCTGGAGGAGGCAATTATTTTGCTCGAACTCTATTTAGTTATTATGGTCATTTCATGCTCATGGGCTGTATATTTTCTGTTCGTTTCTAAACCTGTAATTGGGCAAACTTAAGATTGTTTCAAATTAAGAGAAGCAGCTAGCTAGCCTTTCTAGCCAGTCTATGTTCATGTCACATTCAGAAGTGAAATGAATTGTGGGTTTTCTTGACATCATTCATCGCTAGCTACCTGAAGTTTGTCGCACGGCGAAATGGACTTTTCCAAATTTCTGGACGATGATTTCGACGTGAAGGACTGGGTGAATGGGGCCTTCAAGATGCAGAAGGATGTGCCTGGGAAGGCAGATGCACACGCGGCAACGCTGGTCATGAAACTGCAGTTGTTCATCCAGGAAGTCAACAATGCAATAGAGGAGAGCAGTAACCAGGCCCTGCAGAACATGCCCCGAGTGCTGCGGGACGTGGAGGCCCTGAAGCAGGAAGCGTCATTCCTGAAGGAGCAGATGGTCCTTGTCAAAGAGGACATCAGGAAATTTGAGCAGGACACTGTTCAGTCCATGCAGGTCTTGGTGGAGCTCGATCAGGTCAAGTCTCGGATGCACCTAGCCTCCGATGCACTACAGGAGGCAGACAAATGGAGCACGCTCAGTGCAGACATCGAGGAGACCTTCAAGACACAGGACATGGCTGTAATCTCTTCTAAACTGACCGCCATGCAGAACAGCCTGGCTATGCTGGTGGACACACCAGACTACTCTGAGAAATGTGTGCACCTGGAGGCTCTGAAGAACAGGCTGGAGGCCTTGGCCAGCCCCCAGATAGTAGCCACCTTCAACTCCATGTCTGTAGACCAAGCCAAGCTCTTTGTGAAAGTCTTCACAGAGATCGACCGAATGCCACAGCTTCTTGCCTACTACTACAAGTGTCATAAGggtCAGCTGGTGAGTGTGTGGCAGGACCTGTCTCAGAGTGAGCTGAGTCTAAATCAGCAGCTGGCTGAGTTCTACGACACCTTGCTCTCCACCTGGCACTCCCAGCTACAGTGGAGCAGccagGTGTTTAAGAACCCATACGAGGTGGTGACAGTGCTGCTGATCCAGACCCTGGGGGCCATGGTGCCCTCCATCCCTGTGTGTCTGAGCACGGCCATGGAGCGCGCCCCCCAGGAGCAGCGGCTGGACACCCTGCTGGAGCTCCACCACACCGCTGCCACCTTCGGCAGGAGCCTGGCGCAGGCCATGTTGCCTCACCTGGGCGAGAACAACCTGCTGAAGGTGAATGAGCTGGTCAGTGCCCTGTACGACCCCTACAAACCCTACCAGCTGCAGTATGGAGACCTGGAGGAGTCCCACCTCCTCATTCAGATCAGCGCCGTGCCCCTGGAGCGTGGTGAGGTGATAGACTGTGTAGAGGAGCTGAGTCACTCAGTGGGGAAGCTGTTTGGCCTGGCCGGTGCTGCTGTTGACCGCTGTGTCAAACTGACTGACGGCCTGGCCTTGTGTGGCCTCCTCAAGGCCCTCAAAGCCCTCTTCGCTAAGTATGTGTCAGACTTCTCCACTACTCTGCAGTCAGTCAGGAAGAAGTGCAGGTTGGAGGACATGCCCAGTGCTGCGGTGTTCCAAGAGGATTGGACTGCCTTCCAGAACTCGGTCAGGATCATTGCCACCTGTGGGGAGTTGCTGAGACAGTGTGGAGCCTATGAGCTGCAGCTGTCAAACAAGATCCTTGCCACGGCGGGGAAGTACCTGTCTGAGTCGTACAGCCCTAGGAGCCTGGCGGGCATCCAGGAAGCCAGCTCCACAGAGAGGAAGGCAAGCGGCAGGAACCCCTGGCAGGAGTATAACTACCTGCAGAGGGGCAACATGTCAGAGTACAACAGCCTGATGGGGCTGCTCTACTCCCTCAAGGAGAAGGGGACAGGTAACTCCAGTCTTCTGGCTGAGCCCCGAGTGGCTCTGACCCGTCTCAACCAGCAGGCCAACCAGCTGGCCTTCGACTCGGTCTTCCTGCAGATCAAACATCAACTCTGCTTGGTCTCCAAAatggagAGCCGAGACGCAGGAGGTTTTGGAGAGAGCTATGCTGAAGACCTGCCTACCTTCAGCTTGTCCCCACAGGAGTACATCACCAATATAGGACAGTACATCATGTCTCTGCCGCTCCACTTGGAGCCCTTTGTGACGCAAGAAGACCCGGCGCTGGAGTTGGCCCTGCACGCAGGAAAACTGCCTTTCCCTCCTGAGCAAGGTGATGACCTTCCGGAGCTGGACAACACAGCAGACTACTGGCTGGGCTCCATCGCCAGGGCGACCATGCAAACGTACTGTGACGCCATCCTGCTCATCCCAGAGCTCACGGCCCACTCCACCAAACAGCTGGCCACCGACATCGACTATCTGAGCAACGTTATGGACGCTTTGGGCCTGCAGCCCTCCAGGACACTTCAGCAGATAGTGACCCTGCTGAGGGCCAAGCCAGAGGAGTACAGACAGACGGCCAAACTGCTGCCCCGCAGACTGGTGTCCACCATCGCTGCCCTGAGAGGGCTGGACCACTGACCACGGTCACACTCTAAACCGATTTGATCACTACAATCTGGAGTCTGGGCCCCTGGTATGACGGAGAACTGAGAAGTATCCATTTGGGGATATTCCCATCATGCAACATCTTCAAATCAAACATTGTAACTGCTTTGGCATCATACTATTGGCAATTCTgttagtgtaaaaaaaaaaaaaatggttttctATTATGTTACATGTTTGTTCATTTACACTTATATTGGGGTAAATCCAGGTAGAATTGGTTTTGCTTATTTGTAATGTACTGGAATCTATCCACTAATTTAATAAACATGTGGCCTTGTTGTCTTCAAGTC

Function

NR:

description
conserved oligomeric Golgi complex subunit 7-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20294 COG7; conserved oligomeric Golgi complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565237.2 True 2977 mRNA 0.53 19 22478166 22495374

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b11.2 LOC106579185 coding upstream 2856 22368887 ~ 22475310 (+)
mfsd1l mfsd1 coding upstream 111901 22357584 ~ 22366265 (+)
spsb3b LOC106579188 coding upstream 124335 22342314 ~ 22353831 (+)
atp6v0cb vatl coding upstream 149017 22317369 ~ 22329149 (+)
ntn2 LOC106579193 coding upstream 333882 22081108 ~ 22144284 (+)
LOC110491640 LOC106579183 coding downstream 690 22496064 ~ 22523038 (+)
LOC110492853 NA coding downstream 80655 22576029 ~ 22581228 (+)
lrrc4bb LOC106579180 coding downstream 163396 22658770 ~ 22670849 (+)
LOC110492854 LOC106579179 coding downstream 194934 22690308 ~ 22706146 (+)
si:ch211-234p6.5 LOC106579177 coding downstream 292455 22787829 ~ 22827477 (+)
G1352858 NA non-coding upstream 184692 22291443 ~ 22293474 (+)
G1352821 NA non-coding upstream 257935 22218472 ~ 22220231 (+)
G1352815 NA non-coding upstream 268306 22209648 ~ 22209860 (+)
G1352810 NA non-coding upstream 283306 22194315 ~ 22194860 (+)
G1352807 NA non-coding upstream 294397 22183431 ~ 22183769 (+)
G1352942 NA non-coding downstream 22691 22518065 ~ 22518609 (+)
G1352982 NA non-coding downstream 88095 22583469 ~ 22583919 (+)
G1352991 NA non-coding downstream 97939 22593313 ~ 22593584 (+)
G1352999 NA non-coding downstream 112300 22607674 ~ 22608992 (+)
LOC110491629 LOC106579195 other upstream 477915 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 797285 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1073049 21402227 ~ 21405117 (+)
G1351274 NA other upstream 1257019 21220765 ~ 21221147 (+)
G1350275 NA other upstream 2440188 20030730 ~ 20037978 (+)
G1353021 NA other downstream 136505 22631879 ~ 22632305 (+)
G1353519 NA other downstream 549895 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 628485 23123859 ~ 23134383 (+)
G1353660 NA other downstream 803083 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 984715 23430867 ~ 23488782 (+)

Expression


Co-expression Network