LOC110492854 (LOC106579179)


Basic Information

Item Value
gene id LOC110492854
gene name LOC106579179
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22690308 ~ 22706146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945877.1
TATGACTGGCGTAAGGTATTTCGTCATGGCGATCGATCCCCCATTGAGTCGTTTCCCATGGACCCTCACGGTGAGGAAGTGTGGGCACAAGGCTTCGGGCAGCTAACTGAGTTGGGGATGAGACAGCAGTTTGACTTCGGCAGGTTTCTAAAGAGACGCTATGGACACTTCCTCAGTGAAGACTACAACAGCAAAGAGGTGTACGTGCGGAGTACAGACTATGACCGCACTCTAATGAGTGCCCAGGCTAACCTGGCTGGGCTGTTCCCCCCAAACAGACGCCCCCCTCCCCTCATGCCCCAGTTACCATGGCGGCCCATTCCAGTGCACACTGTCACCAGAGCACAGGATAAGGTAGGCGGGCGAAGGGCTCTAAACCTGCGACCAAATATTTTCCTAGGCTTCACACTGTACCATTTGTTCCTCTGTGCCCTAGAGAAACAAGCGAGTGCAGATTCATTCACGTCATGGTTTCACCATTACTCCAGCGAGGTAGTAATGGTGGTCAAACCAGGTCAAACCAGGTCAAAAGATCTGACCAATAGTATCGGCGCAACATTTTCACCTTCCTATGGAAGATTGACCGCAAGCTGGCAGCTCCCTCCAGATGGAAGAACCACAACAGAGCAAAAAAGACCGGTCCGGGGAACGGTAACGTATGGCGGATGGTTGGGAATCGCGGCGAGTAGTGCGGACGAAGTGGAGGAAATTGAGACAAGGTTGGAGAAGCAACAGCTGTGCTGGGATGCGATCAATATGGGTGACCGTTCTGCTGATATGGAGTGGGAGGATGAGGGTCAAGGATCTGAATGGTCTGTAGAGGAAAGAcataggaagaagagagatcatgatactgaAAGCAGTGGAGCGTCTAGTCTGCAAAGCGTAAAGAGGGCCAAGCTGTTGAAGTCCCCAAGCAAACACTGCCCCAGGTTTAGAGAGCTGATGGGGGAGACGTTTGACAGCGAACACTACCGGAGAGTTCTCAAGTCTCACCAGCGATTTATACAGGAGCTCTCCAACCACACTGGGTATCCTGTGTCTAGGCTGCTGGGCAGGAATTCCATATGGAGGGTCTACGACACTCTCTCCTGTCAGAGGAATCACAACCTGACCAcccctggctgggccacacagGAAGTTCTCAACACTCTACAGGAAATATCCTCCTTTGAGGTCATGTTCAGCGTTGTCACTCACAAGAGAAAGGAAAAGGCCAGGCTCTCAGGAGGGGTTCTGTTGAATGCCATCCTGAGGAATTTCTCCAAGGCAATGGAGCAAGGGAGCACGCTCAAGTTCATCATGTATTCAGCAcatgaCTCCACCCTCATCACTCTCCAGGCTGCCCTAGACGTGTACAATGGTCTTCTTCCTCCTTATGCTGCCTGTCAGCTCTTTGAGTTCTACCAAGAGGACGATGGGTCCTATTCTCTTAACTTGTATTACCGTAATGACTCATCCCGTGATCCCTACCCGACCCCTGTGCCTGGCTGTGAGACAACTCCGTGCCCTCTGACCTCATTCACTGACCTGGTTAAAGATGTCATCTCAACGGACTGGGACGCCGAGTGTGggctcaaaccatcatggtccaaCACAGGTGTCATTGCGGCGCTTGCAGTGGCAGTGGCTATCCTGACAATGGCGCTGTTGGCCAGCATAGCAGTGTTAATTCACCAGAGGAGAAACCTGTACTCCAGGGAGGGGTAATCTGGCTCTCCAGGCTTGAATAAGTCTTCCTATAACATCATGGGGGCATTTGGAGAGGACAGGGCAATACATCAATACTTATAGGCCTACTATGAGATGAACATGGAAATGATCCATACAATGACCTTGTGAATTTTGTTCTCTTGTGATCCCATTGTActgttttgtattgtattgtttttaGTTCCTATTGGATGTTGTTCTATTTAGCAGAATGTCAAGTCATCTTAGGTCTTTGGTGAGTGATTTGGCTTTTATAATATTTAGAAAATGATTGAATTAGTTgtctccttgactttttccacgttttgttgtcttacagcctgaatttaaaatggattacattaagATTTTATTGTcacacacaataataccccataatgtcaatgtggaattatgtttttacat

Function

NR:

description
testicular acid phosphatase homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945877.1 True 2118 mRNA 0.49 11 22690308 22706146

Neighbor

gene id symbol gene type direction distance location
lrrc4bb LOC106579180 coding upstream 19459 22658770 ~ 22670849 (+)
LOC110492853 NA coding upstream 109080 22576029 ~ 22581228 (+)
LOC110491640 LOC106579183 coding upstream 167270 22496064 ~ 22523038 (+)
LOC110491641 LOC106579184 coding upstream 194934 22478166 ~ 22495374 (+)
si:ch73-103b11.2 LOC106579185 coding upstream 214998 22368887 ~ 22475310 (+)
si:ch211-234p6.5 LOC106579177 coding downstream 81683 22787829 ~ 22827477 (+)
LOC110491647 LOC106579176 coding downstream 129371 22828198 ~ 22876076 (+)
fgf21 LOC106579352 coding downstream 171111 22877257 ~ 22882635 (+)
si:dkey-197c15.6 LOC105030686 coding downstream 278767 22984913 ~ 22987169 (+)
zgc:56095 fri3 coding downstream 307686 23013832 ~ 23043155 (+)
G1353326 NA non-coding upstream 3202 22686863 ~ 22687106 (+)
G1353322 NA non-coding upstream 5869 22684125 ~ 22684439 (+)
G1353037 NA non-coding upstream 7970 22682054 ~ 22682338 (+)
G1353001 NA non-coding upstream 14747 22674805 ~ 22675561 (+)
G1353028 NA non-coding upstream 38353 22651205 ~ 22651955 (+)
G1353355 LOC106579178 non-coding downstream 15089 22721235 ~ 22722278 (+)
G1353332 NA non-coding downstream 17326 22723472 ~ 22724473 (+)
G1353387 NA non-coding downstream 62339 22768485 ~ 22768693 (+)
G1353420 NA non-coding downstream 128467 22834613 ~ 22834895 (+)
G1353021 NA other upstream 58003 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 690057 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 1009427 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1285191 21402227 ~ 21405117 (+)
G1351274 NA other upstream 1469161 21220765 ~ 21221147 (+)
G1353519 NA other downstream 339123 23045269 ~ 23045884 (+)
LOC110491658 LOC106579351 other downstream 417713 23123859 ~ 23134383 (+)
G1353660 NA other downstream 592311 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 773943 23430867 ~ 23488782 (+)
G1354668 NA other downstream 1287472 23993618 ~ 23995021 (+)

Expression


Co-expression Network