si:dkey-197c15.6 (LOC105030686)


Basic Information

Item Value
gene id si:dkey-197c15.6
gene name LOC105030686
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 22984913 ~ 22987169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565261.2
CAGACCATGTCCACCAATGAAGATGTACTTCCTTCCTCCACCACGTTTTTCATTGTTTACAATCGTTCGGCGCAAAGAAATTTGTGTATTTGAAGCTTAACGTGaatgaaatgtgacatgtttAGGATTTAGATAAGTAGCTTGCCGGAATGTTCTAATTCCATGCCGAGCATCCAACACGGGTTCTTTCTCTGCAAACATTTGCCTGTTAGTCTAGCCTAGACATGGCTTTTGCTCCCGCTGTGTGGTTAGCTGCTCAAGCAGAACTCTACGAGGACGACGAAGAGGCCGAGGTAAACAACTTCCCAGAGCCACAGAAAAACTACTTGGGCGATTACAatgatgattatttatttgagaggTTCCGTTTAACTAGACCTTGCATAAGTTTCATCACGGATTGCGTCAGGCTCCGGATGAAAGCCACGCTCCAGCAAATGAATGGACCTTCCGTCGATGAAATGGTGATAGTGGCACTGGACTATTACGTAAATGGTATTTTGTCGACCAAAGTCGTAGATATGATTCAAATGGAGCAAATGGAGATTCACGAAGTCATCAACAATGTCTCCAAAGTGTTGTCAGGTATGGTCAGGGAGTTTATCACTTTCCCGGCGAATGGTGAGGAACGAGCAAATGTGGCGCACGAGATCAAGAAAATATGCGGGATACCGACCTCCATGGGCTTGGTGGGATGCATGCATGTCAAGGTGAGACCACCTCATCACGACAAGGAAGCTTTTCGGAACACAATGGATAACCACACCGTCATGACCCAAGTCATATGCGATTGTGAAGGGAATTTAATGAGTGTTGAAAACTGCTGCGTTGGCAGCACACCAGAGCAAACCATATGGGATATGTCGGATATTGCCCAGCAGCTAAAGCATGGAGCACATGGGACGCATTGGATCATCGCCGGAAAAGGCTATGCGTTGAGCAGACACCTCCTGACGACCGTTTCACCAGCCAAAGAGAAAGCGGATCGGCGGTTCAATGCAGCCCACGGCATGATCCACTCGGTCCTCCAGAGGACCATCACCTTGGTGAAGAGGCGCTTCAGGTGCCTGGCCAATCTGGGCCACGTGCAGCAGAACAGTCTGGACAAGAAGGCTGAGATCATCAAGGCCTGCTGCGTCTTGCATAACATCGCCAAGAAGTTCTCGGTGCCTGTGCTCAACGATACCGTGCTAGAGACTATGCACCCGGCCGAGAATCACCAGGTGCCGGTGGTGGAGGTGCCTAGCTACGCAGAGAAATCCAGAGCTGCCATTATCGGCATTTATTTCTCGCATTCCTCCGGGAATGACGGCATTTCAGACTGAGAACAATGGAAATATTTGTATAAAATGGTTGTTGACATTTGGGTTTAATAGGAGGATGGTTCGGTCCCTTATTATAACAGTTTGTGAAAATAGGTGCTACTGGATTGACaaaaagtattttattttatCACGCTTTGTGATACATGAAAACCAAATGACAATACTTTGGGTTTATCTATTTACATGTTTTTATGCATTGTCAATAAACGTCAAGTAAAAATCTAATCCTTCATGAATCATTTCAATTGCAATTTAGAAATTGATAGGCTAAAATTGACATTTATTGAGAACACAAGCAGCATTTTCTAACACAATGATAAAAAAAGGTACCTAGGTGAATGTGAAGTGTGCTGAATTCTCCTGAACATAGCCAGTGAATGATTACATACAATATATGCTTAAACATTATGtacatgtgaatatatttaaatAAAAATCTTAACA

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565261.2 True 1769 mRNA 0.44 2 22984913 22987169

Neighbor

gene id symbol gene type direction distance location
fgf21 LOC106579352 coding upstream 102278 22877257 ~ 22882635 (+)
LOC110491647 LOC106579176 coding upstream 108837 22828198 ~ 22876076 (+)
si:ch211-234p6.5 LOC106579177 coding upstream 157436 22787829 ~ 22827477 (+)
LOC110492854 LOC106579179 coding upstream 278767 22690308 ~ 22706146 (+)
lrrc4bb LOC106579180 coding upstream 314064 22658770 ~ 22670849 (+)
zgc:56095 fri3 coding downstream 26663 23013832 ~ 23043155 (+)
syt5b LOC106579173 coding downstream 66688 23053857 ~ 23069999 (+)
LOC110491656 dnaaf3 coding downstream 83622 23070791 ~ 23078486 (+)
LOC118939472 NA coding downstream 126225 23113394 ~ 23121852 (+)
LOC110491658 LOC106579351 coding downstream 137121 23123859 ~ 23134383 (+)
G1353399 NA non-coding upstream 79348 22899091 ~ 22905565 (+)
G1353451 NA non-coding upstream 91401 22893225 ~ 22893512 (+)
G1353450 NA non-coding upstream 92099 22892423 ~ 22892814 (+)
G1353449 NA non-coding upstream 92796 22891918 ~ 22892117 (+)
G1353506 NA non-coding downstream 16249 23003418 ~ 23007616 (+)
G1353521 NA non-coding downstream 63361 23050530 ~ 23050755 (+)
G1353522 NA non-coding downstream 65650 23052819 ~ 23053045 (+)
G1353531 NA non-coding downstream 94447 23081616 ~ 23082242 (+)
G1353534 NA non-coding downstream 97810 23084979 ~ 23085305 (+)
G1353021 NA other upstream 352608 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 984662 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 1304032 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1579796 21402227 ~ 21405117 (+)
G1351274 NA other upstream 1763766 21220765 ~ 21221147 (+)
G1353519 NA other downstream 58100 23045269 ~ 23045884 (+)
G1353660 NA other downstream 311288 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 492920 23430867 ~ 23488782 (+)
G1354668 NA other downstream 1006449 23993618 ~ 23995021 (+)

Expression


Co-expression Network