syt5b (LOC106579173)


Basic Information

Item Value
gene id syt5b
gene name LOC106579173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23053857 ~ 23069999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946541.1
GTGAAGCGTTCATctatgtatacggCTGGAATGAGGATGGCCAGTGTGCAGTTCCGGACCCGTCGGGCTGCGGAACCGGCAGAACCAGAACCTGAACATGAAAAAGAGCCAGAGCAAGTAGAGGAGCCAGCTGCCCACGTCCCTCCAGCACACCACCCCGGCCACCACAACTATGACCACATGAAGAACAAGTTCATGAATGAGATTGGCCATCTGCCACTCCCTATGTGGGCAGTTGGGGCCATCGTCGTGGTGGTGCTGGTGTTGGTAGGATGCTGCACCTTCTGCCTCTTCAAAAAATGCTTTGggaaaaagaaaaaaacaaagaaaGTGAGGGAGAGGAAGGCTGGCCGCCGGAGGAAGGCAGACAacgaagggggaggagagggtggcGATAAGGAAGAAGGGGATAAGAaagaaggggaaggagaggagaaggagcagGAGAAGCTGGGGAAACTGGAGTTCTCCTTGGACTACAACTTCACAGATGCCCAGCTTATAGTGGGTATCCTCCAGGCTCAGGATCTAGCTGCCATGGATATGGGGGGTACCTCAGACCCCTATGTAAAAGTCTACCTGCTCCCAGACAAAAAGAAGAAGCATGAAACTAAGGTCCAGCGCAAGAACCTGTGCCCGGTTTTCAACGAGACCTTCATCTTCAAGATCCCGTACACGGAGTTGGGAGGGAAGATCCTGGTGTTGCAGGTCTTCGACTTTGACCGTTTCTCCAAGCATGATGTGATTGGGGAGATAAAGATCCCCATGAACAGTGTGGATCTGGGACAACCAATGCAATGTTGGAGGGACCTGGAGAACAGTGAAAAAGAAGAGGCAGAGAAACTGGGTGATGTCTGCATCTCCTTGCGCTACGTACCTACTGCTGGCAAACTCACTATCAACATCATGGAGGCCAAGAACCTAAAGAAGATGGATGTTGGTGGCTTATCAGATCCATTTGTGAAGATTGTTCTGCAGCACAATGGGAAACGAatcaagaagaagaagacaactgTCAAGAAGAACACACTCAACCCTTACTTCAATGAGAGCTTCAGCTTTGAGATTCCCTTCGAGCAGATTCAGAAAGTGCAGGTCGTCATAACAGTGTATGACTACGACAAGCTTGGGAGCAACGATGCAATCGGGAAGACCTTCATGGGTTACGGTGCCACAGGAGTTGGTCTCAAACATTGGTCCGAAATGTTGGCCAATCCCAGACGTCCAGTTGCCCAATGGCATGTCCTCTGCCCAGAGGAGGAGGTGGATGCAGCTCTGAAGGTCCCACCTCGTTAATGATCCCTCAACATCCTTGGATCATTAATGTTATCCACGAGGAAAGCAAAACATTTTGATATGTCTTTCAGTGTTATTAAGACCTCTTTGTATGTTTGcctctgtctgtttttctgtcaTCTCTTTTTGGCGTACTTTTTTTTGTtaagtgggtgtgtgtttgtacgcgtatgtttgtacgtgtgtgtgcatgtgcacgcATTGCAGCATGAGCGTtcatgtgtttgtgtctctgacgCCATTGGATGTTTTTAAAATTACCTGCATTTGATTTGTCTGAATGTTCAGGACTGATTATAGCCCATACTATGTTATTTTGTTTTATAAAACACCCCTCTGTTGGTTTCTAAATGTAGGCCTAGATGTAAAAAAATCAATATTATAAACAAATATGTCAAATATGCACCCTTGTTATATGGCCTTATAGGCTACAGACAATCAGATGAAGGAATTCAATTGTTTTTTGACTCATTGACAACCTTCCGTTCCGCACACATATACTACTTCTGATTTTGTGAACTGtcatgtaggcctacattaaaaACATAATTAGTGGCAGTGGTTATAGTTAGAATTAAGATTGCATTATGTTTTGCTTGATGGTCGTAAGATACTTCAACTATACTGAAcccaaatataaacacaacatggaaaatgttggtcccatgtttcatatgctgaaataaaagatcccagaaatgttccatatgcatttctctc
>XM_021565264.2
CACTGGAATATTCACGAAGGAAGGAACGATGGGTGTGTGAGGGTTCCCAAGGGCCATTTTGACACAAAAGTGGTTTATTCCAAATTGATGATATAAAAGACAGAGGGGAAAATATTAACAGCTGGAATGAGGATGGCCAGTGTGCAGTTCCGGACCCGTCGGGCTGCGGAACCGGCAGAACCAGAACCTGAACATGAAAAAGAGCCAGAGCAAGTAGAGGAGCCAGCTGCCCACGTCCCTCCAGCACACCACCCCGGCCACCACAACTATGACCACATGAAGAACAAGTTCATGAATGAGATTGGCCATCTGCCACTCCCTATGTGGGCAGTTGGGGCCATCGTCGTGGTGGTGCTGGTGTTGGTAGGATGCTGCACCTTCTGCCTCTTCAAAAAATGCTTTGggaaaaagaaaaaaacaaagaaaGTGAGGGAGAGGAAGGCTGGCCGCCGGAGGAAGGCAGACAacgaagggggaggagagggtggcGATAAGGAAGAAGGGGATAAGAaagaaggggaaggagaggagaaggagcagGAGAAGCTGGGGAAACTGGAGTTCTCCTTGGACTACAACTTCACAGATGCCCAGCTTATAGTGGGTATCCTCCAGGCTCAGGATCTAGCTGCCATGGATATGGGGGGTACCTCAGACCCCTATGTAAAAGTCTACCTGCTCCCAGACAAAAAGAAGAAGCATGAAACTAAGGTCCAGCGCAAGAACCTGTGCCCGGTTTTCAACGAGACCTTCATCTTCAAGATCCCGTACACGGAGTTGGGAGGGAAGATCCTGGTGTTGCAGGTCTTCGACTTTGACCGTTTCTCCAAGCATGATGTGATTGGGGAGATAAAGATCCCCATGAACAGTGTGGATCTGGGACAACCAATGCAATGTTGGAGGGACCTGGAGAACAGTGAAAAAGAAGAGGCAGAGAAACTGGGTGATGTCTGCATCTCCTTGCGCTACGTACCTACTGCTGGCAAACTCACTATCAACATCATGGAGGCCAAGAACCTAAAGAAGATGGATGTTGGTGGCTTATCAGATCCATTTGTGAAGATTGTTCTGCAGCACAATGGGAAACGAatcaagaagaagaagacaactgTCAAGAAGAACACACTCAACCCTTACTTCAATGAGAGCTTCAGCTTTGAGATTCCCTTCGAGCAGATTCAGAAAGTGCAGGTCGTCATAACAGTGTATGACTACGACAAGCTTGGGAGCAACGATGCAATCGGGAAGACCTTCATGGGTTACGGTGCCACAGGAGTTGGTCTCAAACATTGGTCCGAAATGTTGGCCAATCCCAGACGTCCAGTTGCCCAATGGCATGTCCTCTGCCCAGAGGAGGAGGTGGATGCAGCTCTGAAGGTCCCACCTCGTTAATGATCCCTCAACATCCTTGGATCATTAATGTTATCCACGAGGAAAGCAAAACATTTTGATATGTCTTTCAGTGTTATTAAGACCTCTTTGTATGTTTGcctctgtctgtttttctgtcaTCTCTTTTTGGCGTACTTTTTTTTGTtaagtgggtgtgtgtttgtacgcgtatgtttgtacgtgtgtgtgcatgtgcacgcATTGCAGCATGAGCGTtcatgtgtttgtgtctctgacgCCATTGGATGTTTTTAAAATTACCTGCATTTGATTTGTCTGAATGTTCAGGACTGATTATAGCCCATACTATGTTATTTTGTTTTATAAAACACCCCTCTGTTGGTTTCTAAATGTAGGCCTAGATGTAAAAAAATCAATATTATAAACAAATATGTCAAATATGCACCCTTGTTATATGGCCTTATAGGCTACAGACAATCAGATGAAGGAATTCAATTGTTTTTTGACTCATTGACAACCTTCCGTTCCGCACACATATACTACTTCTGATTTTGTGAACTGtcatgtaggcctacattaaaaACATAATTAGTGGCAGTGGTTATAGTTAGAATTAAGATTGCATTATGTTTTGCTTGATGGTCGTAAGATACTTCAACTATACTGAAcccaaatataaacacaacatggaaaatgttggtcccatgtttcatatgctgaaataaaagatcccagaaatgttccatatgcatttctctc

Function

NR:

description
synaptotagmin-2-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946541.1 False 2016 mRNA 0.45 9 23053857 23069999
XM_021565264.2 True 2112 mRNA 0.45 9 23056601 23069999

Neighbor

gene id symbol gene type direction distance location
zgc:56095 fri3 coding upstream 10702 23013832 ~ 23043155 (+)
si:dkey-197c15.6 LOC105030686 coding upstream 66688 22984913 ~ 22987169 (+)
fgf21 LOC106579352 coding upstream 171222 22877257 ~ 22882635 (+)
LOC110491647 LOC106579176 coding upstream 177781 22828198 ~ 22876076 (+)
si:ch211-234p6.5 LOC106579177 coding upstream 226380 22787829 ~ 22827477 (+)
LOC110491656 dnaaf3 coding downstream 792 23070791 ~ 23078486 (+)
LOC118939472 NA coding downstream 43395 23113394 ~ 23121852 (+)
LOC110491658 LOC106579351 coding downstream 54291 23123859 ~ 23134383 (+)
LOC110491660 LOC106579168 coding downstream 138127 23208126 ~ 23213840 (+)
LOC110491663 LOC106579167 coding downstream 147414 23217413 ~ 23235290 (+)
G1353522 NA non-coding upstream 812 23052819 ~ 23053045 (+)
G1353521 NA non-coding upstream 3102 23050530 ~ 23050755 (+)
G1353506 NA non-coding upstream 46241 23003418 ~ 23007616 (+)
G1353399 NA non-coding upstream 148292 22899091 ~ 22905565 (+)
G1353451 NA non-coding upstream 160345 22893225 ~ 22893512 (+)
G1353531 NA non-coding downstream 11617 23081616 ~ 23082242 (+)
G1353534 NA non-coding downstream 14980 23084979 ~ 23085305 (+)
G1353537 NA non-coding downstream 18914 23088913 ~ 23089136 (+)
G1353541 NA non-coding downstream 23727 23093726 ~ 23093995 (+)
G1353548 NA non-coding downstream 35473 23105472 ~ 23105817 (+)
G1353519 NA other upstream 7973 23045269 ~ 23045884 (+)
G1353021 NA other upstream 421552 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1053606 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 1372976 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1648740 21402227 ~ 21405117 (+)
G1353660 NA other downstream 228458 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 410090 23430867 ~ 23488782 (+)
G1354668 NA other downstream 923619 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 1015709 24085708 ~ 24090034 (+)

Expression


Co-expression Network