LOC110491656 (dnaaf3)


Basic Information

Item Value
gene id LOC110491656
gene name dnaaf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23070791 ~ 23078486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565265.2
CTACTCTTCCTTATTTGAAAAGGGTTGCTTAGCAACACATAAACTAGACAGAAAGGTTTGGCTTGAAAGTGCCCTGACAAGAGAGAATGAGCACTGGACGCACTATGGAGGGCGCGGGCTGTGTGACCTGGTGGGGATTCAGTCCTGCGCTTGACCTCCTGCGCAGAGgcTCAGAGAGGCAGGAGGGTGAGGTAAATGTTTTACTGGTGGGCAGTGGCGACCCAAGACACATACTCAAGACCATTGCTGGCCTGAGGGACACAGATACCCTTCATATATGGGTGATAGAGAATAGCATGGACGTGGTGGCTCGACAACTGCTGCTCCTCTTTCTGGCTCTGACACCCCAGGAGAGCATGGGACTTCACGAAAAGACTGAGGTTTTCCTGGAGTTGTTTGGTAACAGTGAGGTCCGCAGTCAGACAGAGGAGACACTGAGACACGTGGCGACAgaactgtctctctcagtcactGAGACACTAGAAACACCCACAAATCCCTGCCTGGACACCACTCATCTCAGATTCAAGGAGCGCGACGATTTGGACAGGATATTCAAACAATGGATCCACCCTCCCCCATCTGCACGTTCTGCCCATGTATCAATAGCCAAGGCCTGGGACGGCCGGGTCCGGCAGCACCTGGGCACCCGCTATGACTCCAGGGCGGGCTGCTTCGACTGGGACCTCACCATGAAGCTACACCAGAAAGGGTGTGGCGTCATCAACAAACAGCACTACAAACTGTGGAGGGAGCGGGGCGTGGCCTTTGAGATGAGGGAGGGCATCTATCAAATGGCCAACGAGAGCTTACTCTCTACGAGAGTATTCAGTCATaggggtgaCAAAATGGCACTGAGGGGATACTGGGGAGACATTGTGTCCAGTCCTTACCTCTCCTTTGGCATCGAGACAGATGACGAGAAACTGCTGCAGAAACAGAATGGGCAACACGTCAAGACAGCCCAGGATATCTCGTATGTGAACGTGCAGGCGCTGTTCAAGTCTTTGTCCTGTAGAGGGGGCACTCCCCCTACTCAGGCATGCAGTGAGGAGGGGAAAGCACTTGTAGCACTGGAGCCAGTGTCACAACCAGAGGCTCATCACAAATCACAAATCAACGAACTCATGCACCTGAATGGGGTGTCAGTGACTTTCCTGCCCCTGGACTCTCTCTCCAAACTGCCAGAGAAACAGAAATACTCCCACTTTTTCAACAGCATCTACTGTGCTGCCAGTATGGTGCACCATTTGAGCCCGACACTGAGACAGATTGCTGCACCCAAAGCCGCCCTCGTGGTGGAGCTGGCCAAGTACCTCTTGGATCTTACCAAGGAGCAGGAGGTGGGGTTTGCTGAGAAAGTCGAGGATGTCGCCAAAGAGGCGGGGTTTGAGCCCtcacaggaggagaagagggatgtTTATGCCACGTTCGCGCTACAGGAGGAGTGAATGTGTTCTATTCCAGCAGACACTCTACGCTTTACTCCGACACTTTAACCCGTTTGATTAGGTCGGTCTTCGGTACTGCAGGAGGGGCAGAGCTGTATACGGAAAATATGTACAGAGGAGACAATTCTGTTCATAGCCGATTGAAAGCAAAGGTAGCATTTTGTGAGAGTTCCATCACATTTTAGGCCTGTTGATCCATCTGTTTTGATCTTAATTCTGTTAATTGCCTATTAAATGAGAGCATGTCTGCTTCACGAATGATTCTAAGGACCTGTAGGTGAGTTGTACCCATTTGTAGCCTACCCAATTCCCTCTAGTGTTAAATAAGTAAAGGTAACTTGTTTTGTTAAATATAGACATGTTTTAAtgagtacagtaatacatagaaTCTGTTTCAGTTAATGTCACACAGTAAATCGTGTCACCTCAATGGGTTCAAGAGAAAAATGTTGAGGCATTGTGTTTGTAAAGCGTTCCTGAAACAGAATATATGGTCTTCTTT
>XM_021565266.2
TCCAAATGTCACGACACTAGCTAATTTAAGAAGCACCGAATTCAAAATAACTGTATTTGACTTGTGTTTCCTTTCCACCATTCATCATGATGAAAATGATGTATCTTCGCTCAAGAGTTTGTATGCATGAATGAGCACTGGACGCACTATGGAGGGCGCGGGCTGTGTGACCTGGTGGGGATTCAGTCCTGCGCTTGACCTCCTGCGCAGAGgcTCAGAGAGGCAGGAGGGTGAGGTAAATGTTTTACTGGTGGGCAGTGGCGACCCAAGACACATACTCAAGACCATTGCTGGCCTGAGGGACACAGATACCCTTCATATATGGGTGATAGAGAATAGCATGGACGTGGTGGCTCGACAACTGCTGCTCCTCTTTCTGGCTCTGACACCCCAGGAGAGCATGGGACTTCACGAAAAGACTGAGGTTTTCCTGGAGTTGTTTGGTAACAGTGAGGTCCGCAGTCAGACAGAGGAGACACTGAGACACGTGGCGACAgaactgtctctctcagtcactGAGACACTAGAAACACCCACAAATCCCTGCCTGGACACCACTCATCTCAGATTCAAGGAGCGCGACGATTTGGACAGGATATTCAAACAATGGATCCACCCTCCCCCATCTGCACGTTCTGCCCATGTATCAATAGCCAAGGCCTGGGACGGCCGGGTCCGGCAGCACCTGGGCACCCGCTATGACTCCAGGGCGGGCTGCTTCGACTGGGACCTCACCATGAAGCTACACCAGAAAGGGTGTGGCGTCATCAACAAACAGCACTACAAACTGTGGAGGGAGCGGGGCGTGGCCTTTGAGATGAGGGAGGGCATCTATCAAATGGCCAACGAGAGCTTACTCTCTACGAGAGTATTCAGTCATaggggtgaCAAAATGGCACTGAGGGGATACTGGGGAGACATTGTGTCCAGTCCTTACCTCTCCTTTGGCATCGAGACAGATGACGAGAAACTGCTGCAGAAACAGAATGGGCAACACGTCAAGACAGCCCAGGATATCTCGTATGTGAACGTGCAGGCGCTGTTCAAGTCTTTGTCCTGTAGAGGGGGCACTCCCCCTACTCAGGCATGCAGTGAGGAGGGGAAAGCACTTGTAGCACTGGAGCCAGTGTCACAACCAGAGGCTCATCACAAATCACAAATCAACGAACTCATGCACCTGAATGGGGTGTCAGTGACTTTCCTGCCCCTGGACTCTCTCTCCAAACTGCCAGAGAAACAGAAATACTCCCACTTTTTCAACAGCATCTACTGTGCTGCCAGTATGGTGCACCATTTGAGCCCGACACTGAGACAGATTGCTGCACCCAAAGCCGCCCTCGTGGTGGAGCTGGCCAAGTACCTCTTGGATCTTACCAAGGAGCAGGAGGTGGGGTTTGCTGAGAAAGTCGAGGATGTCGCCAAAGAGGCGGGGTTTGAGCCCtcacaggaggagaagagggatgtTTATGCCACGTTCGCGCTACAGGAGGAGTGAATGTGTTCTATTCCAGCAGACACTCTACGCTTTACTCCGACACTTTAACCCGTTTGATTAGGTCGGTCTTCGGTACTGCAGGAGGGGCAGAGCTGTATACGGAAAATATGTACAGAGGAGACAATTCTGTTCATAGCCGATTGAAAGCAAAGGTAGCATTTTGTGAGAGTTCCATCACATTTTAGGCCTGTTGATCCATCTGTTTTGATCTTAATTCTGTTAATTGCCTATTAAATGAGAGCATGTCTGCTTCACGAATGATTCTAAGGACCTGTAGGTGAGTTGTACCCATTTGTAGCCTACCCAATTCCCTCTAGTGTTAAATAAGTAAAGGTAACTTGTTTTGTTAAATATAGACATGTTTTAAtgagtacagtaatacatagaaTCTGTTTCAGTTAATGTCACACAGTAAATCGTGTCACCTCAATGGGTTCAAGAGAAAAATGTTGAGGCATTGTGTTTGTAAAGCGTTCCTGAAACAGAATATATGGTCTTCTTT

Function

symbol description
dnaaf3 Involved in motile cilium assembly. Acts upstream of or within axonemal dynein complex assembly and cilium movement. Predicted to be located in dynein axonemal particle. Is expressed in floor plate spinal cord region; neuromast; peripheral olfactory organ; and pronephros. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 2. Orthologous to human DNAAF3 (dynein axonemal assembly factor 3).

NR:

description
dynein assembly factor 3, axonemal

GO: NA

KEGG:

id description
K19752 DNAAF3, PF22; dynein assembly factor 3, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565265.2 False 1953 mRNA 0.50 12 23070791 23078486
XM_021565266.2 True 1997 mRNA 0.49 12 23070885 23078486

Neighbor

gene id symbol gene type direction distance location
syt5b LOC106579173 coding upstream 792 23053857 ~ 23069999 (+)
zgc:56095 fri3 coding upstream 27636 23013832 ~ 23043155 (+)
si:dkey-197c15.6 LOC105030686 coding upstream 83622 22984913 ~ 22987169 (+)
fgf21 LOC106579352 coding upstream 188156 22877257 ~ 22882635 (+)
LOC110491647 LOC106579176 coding upstream 194715 22828198 ~ 22876076 (+)
LOC118939472 NA coding downstream 34908 23113394 ~ 23121852 (+)
LOC110491658 LOC106579351 coding downstream 45804 23123859 ~ 23134383 (+)
LOC110491660 LOC106579168 coding downstream 129640 23208126 ~ 23213840 (+)
LOC110491663 LOC106579167 coding downstream 138927 23217413 ~ 23235290 (+)
LOC110491666 LOC106579166 coding downstream 170173 23248659 ~ 23264309 (+)
G1353522 NA non-coding upstream 17746 23052819 ~ 23053045 (+)
G1353521 NA non-coding upstream 20036 23050530 ~ 23050755 (+)
G1353506 NA non-coding upstream 63175 23003418 ~ 23007616 (+)
G1353399 NA non-coding upstream 165226 22899091 ~ 22905565 (+)
G1353451 NA non-coding upstream 177279 22893225 ~ 22893512 (+)
G1353531 NA non-coding downstream 3130 23081616 ~ 23082242 (+)
G1353534 NA non-coding downstream 6493 23084979 ~ 23085305 (+)
G1353537 NA non-coding downstream 10427 23088913 ~ 23089136 (+)
G1353541 NA non-coding downstream 15240 23093726 ~ 23093995 (+)
G1353548 NA non-coding downstream 26986 23105472 ~ 23105817 (+)
G1353519 NA other upstream 24907 23045269 ~ 23045884 (+)
G1353021 NA other upstream 438486 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1070540 21727617 ~ 22001169 (+)
G1351501 LOC106579196 other upstream 1389910 21679224 ~ 21680881 (+)
G1351366 LOC106579206 other upstream 1665674 21402227 ~ 21405117 (+)
G1353660 NA other downstream 219971 23298457 ~ 23298753 (+)
LOC110491671 LOC106579157 other downstream 401603 23430867 ~ 23488782 (+)
G1354668 NA other downstream 915132 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 1007222 24085708 ~ 24090034 (+)

Expression


Co-expression Network