LOC110491669 (LOC106579159)


Basic Information

Item Value
gene id LOC110491669
gene name LOC106579159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23399396 ~ 23404624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565291.2
TCCATTTCTTGAGAACCGAGAATAATCCTCTCTCAGATTTGCAAGCAATAGTTCGTCATTTTGCTCTGATAACATATCACGTTTCATATTTGAATCTAGGACAAACGCACACAAAAGAAAGATAAATAACAAGGATGGCGAAGGAGGGTGGAACGGTCCGAGTGTGTGGGTTACCCCTAGATATCAGTAAAAACAGACTGATCGACAAGCTCCACATTCATTTCCTGcggaagaggaatggaggaggggaCATTTCATCTGTCACGGTTTCCAAGACAACGCCTGGCTCTGCCTTCATTACCTTTGAGGACAGTGAAGTGGCTCGGAGAGTGGTTGAACATCAGAATCACACATTATCAGTGAATGACAAGCAATATGAGCTAAGTGTGAGTTTGCACAGCAAAGAAATGGACCCAGATGAGCTCTTTGTGGACACAGCTGTGACAGTGGACTACAGCAAATTGAATGGGGGCAAAACATCGATATCTGACATCCTCAAAAATGCCTGCGACATAAAATGCACCTTTCACGTTCATGCTGACCTCTGCACTTTCAAAGGTCGCTACACAGACGTCCAAATCCTGACCAAGTGTCTGCTGAGACTTTTCAATTCACAGACCTCAAAAGATGTCCATTCCCTTAAAGCTGAGGCCACCAAGGATGACAAAAGATACAACTCTGCTCAAGGACAAACAGAAAGACTGCAGGACACTGACACCTCAGGACAGGCCAACGGACAGGACCTGGGGAAATGTTCCAGTAGAGCCTCTGAAAGTAATCGTGCCCTTCTTCAAGAATCTTACACCAATGATAGAAAGGGGGCGGATGCATTGTACACATCATACACCAATCATAGAGAGGAGGCGGGGGCATTGCATACATCTTACATCAATGACATAGAGGATGCAGTGGCATTAGAGAAGGGAACCTTAACGGAGGACTTCTCAATGGTCATAGACTCAGACATCTTCCGATACCTCCGAAAGCATTGCTCGGCTGAGTACCAGAACATCCTCGACAGGCATGGAGTAGAGATACTGGACGTCACCACCAGGGATATCACCACCCTCTATCTGCAGCTTAAGACTGGGGCCACTGGGCGAGGGGTGGAGCGTCTAAGGCGTGCGCATGGGGAGCTGGGCTGGCTGTACCAAGACAAAGAGGCCCAACTTCGCAAGGAGCAGTTGGTTAAGGAAAGCTTCCCCAGGTTGGGGCTCCAGCAGGCTTTTAAAGCCTTAACGCAGAGATTCACAAAGCTGCTGATCAATGAAGACAACTCCAATGTCTATCTGGTGGGAAGTGGAAGTGACgtgtcggaggccaagcagttccTAATGGACACGCAAGGGACAACAAAGGAGCACTGTCAAGAGTTATTTCACCCCTCGGGAGATGCGTCTCTATCCTTTGTGCCTGACACCAAGCTTAGAAAACAAAGGGCTGTGAGGAGCAAAGAATTCAAAATGGCGGCCACATTTGGGAGAACTGTGGGTTCTGAGACACCTAAAGATGATGAGACTTGGTCCAGCTTGGGTGACGTAAAGGCTCCTGAGGATCACCAGACAAATAGTTTCGGTAGTGGACCAATTTCAGGGATTACGAGTCAGAAGGTTGAAATGTCAAGTTCTGGTCCAAGGGATCTCCAGGAAGACACCCTCTTCAAAAGGTATGAACCATCGTCCACTGCTTCCTTGTCTGGTAAACCCCCTCTGAACTTGgcacaaaacaatgaaaccagaCCCACAAAAGCAGCAAACTTTAGTGGATTCCAGGGCTACTCAATGGATGATATGGACATGTCTGTGGACAGGGCGGTTTCAACTGGCGTAGTCCAACAATCCAAGTCAATTTCCACTCTGAGACGGTCCAACAGTTTCTCAGGGCAGGTTAGGACTAAACAAGTCAGAAAGGACAGCAGCTCAGCTGTAGACCTGTTTGGAAAGACCAAAGGAGGCGAAACTACCAGTCACCCAGAGACTAGGCAAGTCTTCAGTGTAGAGCTGGTGGTGCCCACAACTCAATGGTTATACATAAAGGAGGTTTTCCACATACTGATAGAGGAAGTAACCTCTGACCTGCAGATGACAGAGAAAAAAGCATTAAATGAGGTCGTCCTCCATCTGAGAGGGAAAGATCCAGCCAACGTCTGGATGTGTCAGCAGGTGCTGAAAGAGCAGATTGCCAAGGTAGCCGAGGACTTCTCCACCCATGAGCTGTTGTTAACACAGCTGGGTGTGTCAGACTCGAAGAATGAGACAGTGGAGGTGTTATGCACCACTGTGAGAGAGACATGGGAGAAAGTGAAAATCATTCCAATGCCAAATACTAAGAGCATCTTAATCTTTGGTCCAAACCTGGATTGCATGGAGGCGATGTCATTTCTAAAAAAGATGCTTCATTTTGGGACAGAGGGGGAACAGACCATGGAAGAGAGACCCATTGATCTTAAGAAACCATCTTCTGATTCTGCATCCAACGCTGACATAAACTCCTCAGCAGCACACCAGAGCTCTGCCAGTAGTGACAAACAAGACCAGGAGACCACCTCTGCAAACAACATTGCTTCATCAGGGAGCTTGGAGGGAGTGAGCCAATCAGATGTGAAGAAAGTGCCTGTTTTGAAGCTTCGGTTAGGAGCATCTGGTCCCCTGGATGAAAAGAGTTTCAGGACAATCAGTGCTCCCTATAAAGCAGAGAGGTCACTAAGAGTTACAGAAGGAAATTATGGTGCAGCACCATTACCAGAGCACAGTGCTCAGAGGTTGACAGGGCCAAAGCCTGAGGAAAGCCAGATACCTAGCAGTACGGAACTGCAGACCCAAAAGGACCATAGCGAAGGAAATGCCGGTTTGTCCTGTATATGTGGAACCGCAGGGGCATCTGTATCTTGGACGGCTGGTGGAAAGGCCATGTGCCCATCATGCGTGGAATGTACAAAGTCTCATGCAATGAATCCACAAAGCGCCACCGCCAAACATTACGGGGCAAGCCGGtccaatgagaaacaagatgtgAAAGACACCGAGGTGAAGGCCAGTCTATCTTGTGTAGGTGGAACCACTGGGGAATCTGTGTCTATGACTGCTTGTGGCGGGGCCTTGTGCCAGAATCACATCCCTCCCGACTGTAGAGTACGTCCTAAATCTCAGGAAGGTGTCGTGGGCATCCGAGGGACTATGACCCGCAGTGAGATGTCCATCAGTCTGGTTGGGTACAACAAGGATACAACGCTGAAGATAACCTACAACATTCCTGATGGCATCCAAGGGAAAGGTCATCCAAACCCTGGGGGATCTTTCCAAGGGGGCACGTTCCATGCCTTCCTGCCTCTGAATGAAACGACTCTCAAGCTTCTGCCATGCCTCCAACGTGCCTTTCATCGAGGCCTCACCTTCAACGTGAGAGTAGGGGACACTAGGGATTGTGTGACCTGGGGTAGCATCCCACACAAGACCAGCATCGAGGGAGGGATTTCCAGGAATGGATACCCAGACTCCAGATATCTCAAATGCTTAGCTGAGGCACTGAGGTCTCATGGTATCGAGGAGGGCTGAACAACTGCAATGGATCAAGACATGATAAAAAACTCAAACGGACCGAAGAGCGCTTTAAAAATGTAATCATTCATTATTTTTGCTGTACATTTTCCTATGTAGACACTAAAGTTATATAACAAAAAAAAGTAAGGTTCACAATATATATTGTTCTATGAAAAATAGTCACAATCAGGAAATGTTCATGATAATGCCTATGTAAGACGCATATGttgaacacatactgtatattggtTGACTCAAATGATTAAAATACAGATATCAGT

Function

NR:

description
uncharacterized protein LOC110491669

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565291.2 True 3820 mRNA 0.47 6 23399396 23404624

Neighbor

gene id symbol gene type direction distance location
LOC110491666 LOC106579166 coding upstream 135087 23248659 ~ 23264309 (+)
LOC110491663 LOC106579167 coding upstream 164106 23217413 ~ 23235290 (+)
LOC110491660 LOC106579168 coding upstream 185556 23208126 ~ 23213840 (+)
LOC110491658 LOC106579351 coding upstream 272940 23123859 ~ 23134383 (+)
LOC118939472 NA coding upstream 277544 23113394 ~ 23121852 (+)
LOC110491671 LOC106579157 coding downstream 26243 23430867 ~ 23488782 (+)
becn1 becn1 coding downstream 147169 23551793 ~ 23567658 (+)
trnag-ccc-4 NA coding downstream 186074 23590698 ~ 23590769 (+)
trnaw-cca-8 NA coding downstream 187252 23591876 ~ 23591947 (+)
trnaw-cca-9 NA coding downstream 189618 23594242 ~ 23594313 (+)
G1354084 LOC106579160 non-coding upstream 4364 23390762 ~ 23395032 (+)
G1354081 NA non-coding upstream 13227 23385804 ~ 23386169 (+)
G1354080 NA non-coding upstream 13767 23385014 ~ 23385629 (+)
G1354070 NA non-coding upstream 25166 23373987 ~ 23374230 (+)
G1354065 NA non-coding upstream 29058 23370101 ~ 23370338 (+)
G1354114 NA non-coding downstream 48503 23453127 ~ 23459372 (+)
G1354115 NA non-coding downstream 49557 23454181 ~ 23460517 (+)
G1354136 NA non-coding downstream 100562 23505186 ~ 23506816 (+)
G1354199 NA non-coding downstream 192993 23597617 ~ 23620902 (+)
G1354215 NA non-coding downstream 299275 23703899 ~ 23712056 (+)
G1353660 NA other upstream 100643 23298457 ~ 23298753 (+)
G1353519 NA other upstream 353512 23045269 ~ 23045884 (+)
G1353021 NA other upstream 767091 22631879 ~ 22632305 (+)
LOC110491629 LOC106579195 other upstream 1399145 21727617 ~ 22001169 (+)
G1354668 NA other downstream 588994 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 681084 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 1265815 24670341 ~ 24681115 (+)
G1355273 NA other downstream 1276790 24681414 ~ 24684055 (+)

Expression


Co-expression Network