becn1 (becn1)


Basic Information

Item Value
gene id becn1
gene name becn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23551793 ~ 23567658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124429.1
ATCCGTTAAAAACAACAATAAAGTCCTATGTGTTGTTATGGAGGGCTCCAAGTCCTCTAGTACCACCATGCAGGTCAGCTTTGTGTGTCAGCGCTGCAGTCAGCCTCTAAAGCTGGATACATCCTTCAATGTGCTCGACCGTGTCACCATCCAGGAACTTATTGCTCCTCTGGTCACAGTGACACCAAGCAAGCAGACAGAAAGCAATGAGGCGGAAAGTGCTCCAGAGgaAACCTTTGTGGAAACAAAGCAAGATGGAGTCGCAAGAAAATACATCCCTCCTGCAAGgatGATGTCTACAGAGAGCGCCAACAGCTTCACTCTGATTGGAGAAGCGTCGGACGGAGGCACCATGGAGAACCTCAGTCGGAGGCTGAAGGTGACCAGCGATCTGTTTGACATCATGTCGGGCCAGACCGACGTAGACCACCCGCTGTGCGAGGAGTGTACTGACACCCTGCTAGACCACCTGGACACGCAGCTCAACATCACAGAGAACGAGTGCCAGAACTACAAGAACTGCCTGGAGCTGCTGTCCCagctgaaggaggaggaggaggacagcctGTTGCTGGAGCTCCAGAAACTGGGCGAGGAGGAGTCGTCACTGGTGGGGGAGCTGGAGGCGGTGGAAGAGCAGAGGGCTGCCGTGGCCGAGGACCTGGTCCAGGGACGCAGCCACTCCCAGCAGCTAGATACTGAGGAACTGCAGTACCAGAAGGAGTACAGTGAGTTCAAGCGGCAGCAGCTGGAGCTGGATGACGAGCTGAAGAGTGTGGACAACCAGATGCGATACTGCCAGATTCAACTGGACCGCCTGAAGAAGACCAACGTCTTCAACGCCACCTTCCACATCTGGCACAGTGGCCAGTTTGGCACCATCAATAACTTCCGTCTGGGCCGACTACCCAGTGTCCCCGTCGAGTGGAACGAGATCAACGCCGCCTGGGGTCAGACCGTGCTACTGCTCCACGCCCTCGCCAACAAGATGGGGCTACGCTTCCAGAGATACCGCCTGGTCCCATATGGAAACCACTCTTACCTGGAGTCACTTACAGACAAGTCCAAGGAGCTACCTCTGTACTGTTCAGGGGGCCTGCGCTTCTTCTGGGACAACAAGTTTGACCATGCCATGGTGGCCTTCCTGGACTGTGTGCAGCAGTtcaaggaggaggtggagaagggagACACGGGATTCTGCCTGCCTTACAGGATGGATGTCGAGAAGGGCAAGATTGAGGACACGGGAGGCAGCGGCGGCTCCTACTCCATCAAGACCCAGTTCAACTCGGAGGAGCAGTGGACCAAGGCGCTCAAGTTCATGTTGACCAACCTCAAGTGGGGTCTGGCGTGGGTGTCGTCTCAGTTTTACAACCgatagaggaggaagatgaggaatcACCCTGGGTGTGCCCCTTGACCCTTCTAAAACTACAATTTCGTCACAATGTGTTACTCTCTAAAGTTCTTCTTCTACAATGCTCTCCTTGCTTCCCTGTGATGTTTTGAGAGGGTGGGGAGAAGACTGGAGGAAGGACTTTTGAGATTCACCACTGGTGTGAGTTCCAATCCAATACGTCTTGTTTCCTTGTTTGATTTCCACATTGACCATATgaaaggacaaaataaaaactgtTAAATTGTTCACATTCAA
>XM_021564381.2
ATTCATTTCGCGGATTCTTTTGCAAAAAAAGTTTCTTAAACGGAACGAAACTGGGatgggacctacctgaatttgtccaatcgAACTGAAGTTTTGCATCtatttggactaatgattacaccccacgTTTGTGGCAACCTCTTCCCTTTACACACAAGTGTTCGCAGATAGTTTATTAACACAGATAGTCAGTCCACTGTCTGTTTTCCGTCAACAAACACGGTAACATGGCAGTGTGGTAATAACCCTAACGCTATACAGGTGTAGTCTTTTACCTTTTGTTTTTTGACAATTATTTCTCGCTGATATAAAAGGTAACGTTATGTAGCTTAAGTTTCCAAAACAGTACCGCAAGCGATTCCTGTTAATGTTTAGGGCAAGCATCGGGGTTCTTAACTAAATTCACCCAGTCAGTAGTCGCAAAAGTAGTTGGCGTCCATGAATGGGTGTTGTTATGGAGGGCTCCAAGTCCTCTAGTACCACCATGCAGGTCAGCTTTGTGTGTCAGCGCTGCAGTCAGCCTCTAAAGCTGGATACATCCTTCAATGTGCTCGACCGTGTCACCATCCAGGAACTTATTGCTCCTCTGGTCACAGTGACACCAAGCAAGCAGACAGAAAGCAATGAGGCGGAAAGTGCTCCAGAGgaAACCTTTGTGGAAACAAAGCAAGATGGAGTCGCAAGAAAATACATCCCTCCTGCAAGgatGATGTCTACAGAGAGCGCCAACAGCTTCACTCTGATTGGAGAAGCGTCGGACGGAGGCACCATGGAGAACCTCAGTCGGAGGCTGAAGGTGACCAGCGATCTGTTTGACATCATGTCGGGCCAGACCGACGTAGACCACCCGCTGTGCGAGGAGTGTACTGACACCCTGCTAGACCACCTGGACACGCAGCTCAACATCACAGAGAACGAGTGCCAGAACTACAAGAACTGCCTGGAGCTGCTGTCCCagctgaaggaggaggaggaggacagcctGTTGCTGGAGCTCCAGAAACTGGGCGAGGAGGAGTCGTCACTGGTGGGGGAGCTGGAGGCGGTGGAAGAGCAGAGGGCTGCCGTGGCCGAGGACCTGGTCCAGGGACGCAGCCACTCCCAGCAGCTAGATACTGAGGAACTGCAGTACCAGAAGGAGTACAGTGAGTTCAAGCGGCAGCAGCTGGAGCTGGATGACGAGCTGAAGAGTGTGGACAACCAGATGCGATACTGCCAGATTCAACTGGACCGCCTGAAGAAGACCAACGTCTTCAACGCCACCTTCCACATCTGGCACAGTGGCCAGTTTGGCACCATCAATAACTTCCGTCTGGGCCGACTACCCAGTGTCCCCGTCGAGTGGAACGAGATCAACGCCGCCTGGGGTCAGACCGTGCTACTGCTCCACGCCCTCGCCAACAAGATGGGGCTACGCTTCCAGAGATACCGCCTGGTCCCATATGGAAACCACTCTTACCTGGAGTCACTTACAGACAAGTCCAAGGAGCTACCTCTGTACTGTTCAGGGGGCCTGCGCTTCTTCTGGGACAACAAGTTTGACCATGCCATGGTGGCCTTCCTGGACTGTGTGCAGCAGTtcaaggaggaggtggagaagggagACACGGGATTCTGCCTGCCTTACAGGATGGATGTCGAGAAGGGCAAGATTGAGGACACGGGAGGCAGCGGCGGCTCCTACTCCATCAAGACCCAGTTCAACTCGGAGGAGCAGTGGACCAAGGCGCTCAAGTTCATGTTGACCAACCTCAAGTGGGGTCTGGCGTGGGTGTCGTCTCAGTTTTACAACCgatagaggaggaagatgaggaatcACCCTGGGTGTGCCCCTTGACCCTTCTAAAACTACAATTTCGTCACAATGTGTTACTCTCTAAAGTTCTTCTTCTACAATGCTCTCCTTGCTTCCCTGTGATGTTTTGAGAGGGTGGGGAGAAGACTGGAGGAAGGACTTTTGAGATTCACCACTGGTGTGAGTTCCAATCCAATACGTCTTGTTTCCTTGTTTGATTTCCACATTGACCATATgaaaggacaaaataaaaactgtTAAATTGTTCACATTCAAGTCCGCCTAGACTCATAGGTGTTATGAAGGGAGCTATCTGAGACTTTTGGAACACATTCCAGGATTGAGTCCTAATAGTAGCTAAGTGGCTTCTGGTTGTGTCTTTTCCTTCATATGCACATATCTTATGACACTGGATAGGTGAAAGCTGTTGTTTCCAACCTGTTCAATTCTTATAGATCAGTACacatgaagggaaggagagaaggacacATTGAACTACTGAGATGCAGCACTGGAATGGGTTCTTATGTATCATGTGCTTCTTACTGTGCTCCAGAACCAATACTGGAGAGTCACGTATCTGGTTTTGTGCCTATTTTTCTTCAATTGGTTTGTGTCTTTCTCATTCAACTCCACTCTATCTGCAGAAAAAAATTACATTTATTATGTTTTAATAGTTTTTCTTTTACTGTGCTGACACGGTAAAGATGGTTTAATTTCACCACGCGTTGGAACAGCATTGGAACATTTGCCTTGTCTGTTCTCTTGTCACCCCACTTGCAGGGCGCACCAAGTGTCTACCGAAAGCTTTGGCGTCGGGATTATGCTGTGCTTTTGTTGATTGGCAAATTCAACAAGGCAATCCTTTTACTACAAGTGACTTCTTGGTGTAGATTTAAATGTAGACAAGGAGGCTTGTGGCAGTATTTAATACCCATATCACTATATGATTTGGTTTTTCAGGTCCATTACACATATGAAAATGCCAATAATGGACTCACAGAGAACGCCTCATGTAAAAGGATATTTccaattctaacatttgtataAAAAAAGGTAATCAAAATTTTAGACAGATTGCTTGATTTATtgatttacgtaagtattcaacctcgagtcaatacatgttaaaatcacctttggcagagattacagctgagagtctttctgggtaagtctctaaatgCTTTGCACACCAGGATTGCATGTgagtcttcaagctctgtcaagttggatgttgatcattgctacaAAGACATTTAAGTCTTACCATAtaattttaagtcaaaactaactctggaacattcaatgtcgtcttggtaagcaactccagtgtatatttggccttgtgttttaggttattgtcctgctaaaagttgaatatctcccagtgtctgtaaagcagactgaaccaggttttcctctaggaatttgcctgtgcttagcgctATGCTGTTTATTTTCGTCATAAACATCCTTGCCGATGACAGGCATGCAGCCACCCCCATGCTTGAAATTTTGAAGAGTGCTCAGTTATTTGttgttggatttgctccaaatataacactttgtattcaggacataaaatgtatttaattgcca

Function

symbol description
becn1 Acts upstream of or within several processes, including autophagy; cellular senescence; and regulation of skeletal muscle tissue regeneration. Predicted to be located in several cellular components, including autophagosome; endosome membrane; and mitochondrial membrane. Predicted to be part of phosphatidylinositol 3-kinase complex, class III, type I and phosphatidylinositol 3-kinase complex, class III, type II. Predicted to be active in phagophore assembly site. Is expressed in brain; intestine; liver; and muscle. Used to study hepatocellular carcinoma. Human ortholog(s) of this gene implicated in Machado-Joseph disease. Orthologous to several human genes including BECN1 (beclin 1).

NR:

description
beclin-1 isoform X1

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K08334 BECN, VPS30, ATG6; beclin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124429.1 False 1654 mRNA 0.53 11 23551793 23566332
XM_021564381.2 True 3397 mRNA 0.46 11 23552258 23567658

Neighbor

gene id symbol gene type direction distance location
LOC110491671 LOC106579157 coding upstream 63011 23430867 ~ 23488782 (+)
LOC110491669 LOC106579159 coding upstream 147169 23399396 ~ 23404624 (+)
LOC110491666 LOC106579166 coding upstream 287484 23248659 ~ 23264309 (+)
LOC110491663 LOC106579167 coding upstream 316503 23217413 ~ 23235290 (+)
LOC110491660 LOC106579168 coding upstream 337953 23208126 ~ 23213840 (+)
trnag-ccc-4 NA coding downstream 23040 23590698 ~ 23590769 (+)
trnaw-cca-8 NA coding downstream 24218 23591876 ~ 23591947 (+)
trnaw-cca-9 NA coding downstream 26584 23594242 ~ 23594313 (+)
trnaw-cca-10 NA coding downstream 27772 23595430 ~ 23595501 (+)
trnaw-cca-11 NA coding downstream 28960 23596618 ~ 23596689 (+)
G1354136 NA non-coding upstream 44977 23505186 ~ 23506816 (+)
G1354115 NA non-coding upstream 91276 23454181 ~ 23460517 (+)
G1354114 NA non-coding upstream 92421 23453127 ~ 23459372 (+)
G1354084 LOC106579160 non-coding upstream 156761 23390762 ~ 23395032 (+)
G1354081 NA non-coding upstream 165624 23385804 ~ 23386169 (+)
G1354199 NA non-coding downstream 29959 23597617 ~ 23620902 (+)
G1354215 NA non-coding downstream 136241 23703899 ~ 23712056 (+)
G1354168 NA non-coding downstream 214791 23782449 ~ 23784110 (+)
G1354281 NA non-coding downstream 260244 23827902 ~ 23916365 (+)
G1354286 NA non-coding downstream 267201 23834859 ~ 23859610 (+)
G1353660 NA other upstream 253040 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 425482 23123859 ~ 23134383 (+)
G1353519 NA other upstream 505909 23045269 ~ 23045884 (+)
G1353021 NA other upstream 919488 22631879 ~ 22632305 (+)
G1354668 NA other downstream 425960 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 518050 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 1102781 24670341 ~ 24681115 (+)
G1355273 NA other downstream 1113756 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 1196981 24764607 ~ 24783513 (+)

Expression


Co-expression Network