trnaw-cca-11


Basic Information

Item Value
gene id trnaw-cca-11
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 23596618 ~ 23596689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaw-cca-11
GACCTCGTGCCGCAAAGGTAGcgtgtctgactccagatcagaaggttgcgtgttcaaatcacGTCGTGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca-11 True 72 mRNA 0.57 1 23596618 23596689

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-10 NA coding upstream 1117 23595430 ~ 23595501 (+)
trnaw-cca-9 NA coding upstream 2305 23594242 ~ 23594313 (+)
trnaw-cca-8 NA coding upstream 4671 23591876 ~ 23591947 (+)
trnag-ccc-4 NA coding upstream 5849 23590698 ~ 23590769 (+)
becn1 becn1 coding upstream 28960 23551793 ~ 23567658 (+)
trnaw-cca-12 NA coding downstream 1117 23597806 ~ 23597877 (+)
trnaw-cca-13 NA coding downstream 2305 23598994 ~ 23599065 (+)
trnaw-cca-14 NA coding downstream 3493 23600182 ~ 23600253 (+)
trnaw-cca-15 NA coding downstream 4681 23601370 ~ 23601441 (+)
trnaw-cca-16 NA coding downstream 18791 23615480 ~ 23615551 (+)
G1354136 NA non-coding upstream 89802 23505186 ~ 23506816 (+)
G1354115 NA non-coding upstream 136101 23454181 ~ 23460517 (+)
G1354114 NA non-coding upstream 137246 23453127 ~ 23459372 (+)
G1354084 LOC106579160 non-coding upstream 201586 23390762 ~ 23395032 (+)
G1354081 NA non-coding upstream 210449 23385804 ~ 23386169 (+)
G1354199 NA non-coding downstream 928 23597617 ~ 23620902 (+)
G1354215 NA non-coding downstream 107210 23703899 ~ 23712056 (+)
G1354168 NA non-coding downstream 185760 23782449 ~ 23784110 (+)
G1354281 NA non-coding downstream 231213 23827902 ~ 23916365 (+)
G1354286 NA non-coding downstream 238170 23834859 ~ 23859610 (+)
LOC110491671 LOC106579157 other upstream 108006 23430867 ~ 23488782 (+)
G1353660 NA other upstream 297865 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 470307 23123859 ~ 23134383 (+)
G1353519 NA other upstream 550734 23045269 ~ 23045884 (+)
G1353021 NA other upstream 964313 22631879 ~ 22632305 (+)
G1354668 NA other downstream 396929 23993618 ~ 23995021 (+)
G1354681 rpl19 other downstream 489019 24085708 ~ 24090034 (+)
LOC110491698 LOC106579132 other downstream 1073750 24670341 ~ 24681115 (+)
G1355273 NA other downstream 1084725 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 1167950 24764607 ~ 24783513 (+)

Expression


Co-expression Network