XLOC_032360


Basic Information

Item Value
gene id XLOC_032360
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50568897 ~ 50573011 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064689
ccagcaagtATCTCAAAAGATGAGAATCCTGATACTCCAAAAAGTTGACCTTCTATAGAAACATTTAGAAGATATGGATTATGCAACTAAAATTATATAgcttaaaaaaactgatttaataaTATCATCATCAAATGCCCTAAAGAAAATGAACAGTATATAGCAagggtgggcaaacttggtcctggagggcctcatgattgtgaagcgctttgggtgtatggccatacacaataaatgcgctatataaaaacacattacttACTTATTAACTTTATCCCACGAATCAACGCCACTACCCTACAGTATGTGGAAAATAATGTTggttttaaaaaaagtggcatgatGTAAATAAACTCCAAgctttaaatcttttaaattaatgaataccTAGCCGTTATCACCAGggctgatgtgtttttttttctttccatggACATCCACTTTATAGGAACctatgtgtatttgtttatttatttaattgacacaCAAAAAAGTTAGAACATGTCAAAACAGATTTTAGTCAATAAGCACAATCTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064689 True 543 lncRNA 0.33 2 50568897 50573011
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032359 mych coding upstream 114064 50451337 ~ 50454833 (+)
XLOC_032358 ergic3 coding upstream 154700 50393047 ~ 50414197 (+)
XLOC_032357 cyc1 coding upstream 178808 50381347 ~ 50390089 (+)
XLOC_032356 NA coding upstream 329509 50238969 ~ 50239388 (+)
XLOC_032355 BX629346.3 coding upstream 504601 50064180 ~ 50064296 (+)
XLOC_032361 NA coding downstream 217178 50790189 ~ 50992013 (+)
XLOC_032362 NA coding downstream 252222 50825233 ~ 50832346 (+)
XLOC_032363 CR548633.1 coding downstream 502045 51075056 ~ 51075171 (+)
XLOC_032364 ripor3 coding downstream 1103216 51676227 ~ 51763503 (+)
XLOC_032365 tmem74b coding downstream 1200862 51773873 ~ 51780757 (+)
XLOC_032350 BX927257.1 non-coding upstream 695832 49859980 ~ 49873065 (+)
XLOC_032349 NA non-coding upstream 761838 49805664 ~ 49807059 (+)
XLOC_032343 NA non-coding upstream 1038035 49527327 ~ 49530862 (+)
XLOC_032367 NA non-coding downstream 1279062 51852073 ~ 51866260 (+)
XLOC_032370 NA non-coding downstream 1544025 52117036 ~ 52210053 (+)

Expression

Expression of XLOC_032360 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Expression of XLOC_032360 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Co-expression Network