XLOC_032364 (ripor3)


Basic Information

Item Value
gene id XLOC_032364
gene name ripor3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 51676227 ~ 51763503 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063154
TTTGATGCACTCCGTCTGCTTTTTGCGCTGTGTATACGAGCAGCTTCTGAGAATCAGGTGTCATTTCTTGTCTGCTGGAGAAACACACGCTATCAGGAGTCCACAGACATCTGCTGCTGcagcacacgcgcgcacacacacaaacacgccgcTGCTAAGATGAGCCCAAATGTGCGTTTGTTTAGTTGTCAGACGTAACCCGGCTCTGGAATAGAGGAGTTGTGAAGCAGCTGGAGGCGAGATGTCAGTGAAGCTAAAGTTTGATTACCCAGCTGACGGCGGCATGGTTCAGCGCAGCCGCTCATTCACTGGAGTAAACACACTCGGTGGCCGGAGAAGGTAAGCAAGAGTGGTTTGTGTTTTGAGACAACGTGATGCATTTCCATGTGCGTCAGACAGCATTACTTCTACTTTTATTAAGATAAATgtccttaaagcaggggtcaagGAGTCTCATGGAAAGCATGACTCTTGGATGATGGAATTTATGCCATGAGGACATCTCGGGGAGGTCTAGTTTGAAAACTGAGCGCTAAACAAAACACTTGGGAGGGGCTCTGGATTATGCAATAAAGCGGTGCATGTTGTTAGTGTAATCTGAAACTATTCAAAATCTGGCATTTTCAGAAATGATAATAATgctgaaataaaatgtatatatagacAAAAACATAATAATGTTACTAAAACTTCTCTAAAATCAAAG
>TCONS_00063155
CGATTCTATGGCGTGCCGTTGATATTTGATTTAAGATCATGGAAATCGGGTTTTGCGTGTATTAGACAAATAAGGTGAAAGGTTTGAGAAGAAAAAACTTGAAAAAGAATCAGAATTGACTTCAACACCAAGATTCAGAATCGATTCCATAATTAGTTTATGAATCATCCTCAGTGATTCATTCGTTTGCGAACCAATCTGGACACACCTTTCACTTAGTATAACTAACGTTAAGTACTTGCAGCCCTCGAGGACAGCTCAGTTTGTTGGACTTTGTTTTTCGTGATAAATGGGCTTTTTAATCCGACTACGGTTGTTTCGGACCGCAAAATGTCCTGGAGGCGAGATGTCAGTGAAGCTAAAGTTTGATTACCCAGCTGACGGCGGCATGGTTCAGCGCAGCCGCTCATTCACTGGAGTAAACACACTCGGTGGCCGGAGAAGACTTTCCTCAGCACGTAGCTCTCTCCGCTCAAAAGCTGTCACAGGTAAATCTCCCAGAATTCCCTCTAATAGTCGGGCGGGCAGCAGCGTCTGGGGACAACAGCCTGAGCAGGTGGACAGAATCTTCCAGGCTTTGAGGAAGGGACTCAAGGACTACCTGGAAAGCCATCAAACAGAGCTGGACTTTCTGTCATCCCAGCAGAGAGACACAAAGAGGAATTCCAGACTGGCTTTTTTCTATGACTTAGAAAAGgaGATACGAGCCTTAGAAAGATACATCCGGCGTCTAGAGTTTCAAATTAGTAAGGTTGAAGAGCTGTACGAGTCCTATTGTATTCAGTGGCGGCTGTGTCAGGGGGCTTTGAACATGAAGAGAGCATTTTCTCTGTCTCCGTCTTCACGACAGTCTAGAGAGAGTCTACTGGAGCTCAACCGCAACCACAGACACAGCCTGGAGGACATGAGTGCAATGGAGGCAGAACTGGAAATCTTATTGGGAGAGCTACATATTAAAATGAAAGGGTTAATAGGCTTTGCTCGGCTCTGCCCTGGCGATCAGTATGAGGTGTTAATCCGACTAGGCCGACAGCGATGGAGAATAAGAGGCAGAATCCAGACAGATGACCGACAGATGTGGGATGAAGAGGAGATGGTTTTCCTTCCTCACATTCATGGAAACTTTGAGATTAAGGTAACAGAGGTCAAGGGCTTGAGCTCAATCCTGGTCGGGATGGTGACATGCAGGAGTGCAGATTTTTTCACAGCACGGCCACAGATGATGGTTGTGGACATAACAGAACTGGGAACCATCAAGCTGCAGCTAGAGGTGGTTTGGAATCCATTTGATAGCACTGAGGTGAGGCCTCTGACAGCGTCTGCCAGCCGCCAGTCCATCCACAGCAGAAAGGGATCTGTATATAGCTGGACTCCGCCAAACACACCCAGTTTCACTGAGAAATACTTTCTATCTATGATGCGTCAGATGCAGGATGCAGATGGGTCTTTTTCGATTGGCTCACGGGAGTCGAGGGGCGTGTCTTTACTCAGTTACCTAGCCGACTCCACCCAGGCCCTCAGTCCCCCTGCCTATGAGAAGACCAGCGGCCCGCCAGTCGCACAACACACTGTTCTGGATGCTAAGATACAGGATGATGATCTACTGAAGACACACACAGATGCGGAGGAGAGTGTTGAATGGCCTTCAGAGACAGACACTGCTTCTCCAAGTCCAGCGGGCAGCAAACGAGACTCCATATTCCTCTTCCACCGTTACAGCACTCCAGATATCCTCAAACAGAGCGGAGAAATGAGCGTCAGCGCAGGGGAAGGAGATGCACAGGAGACGACAAACCCTGATGAGGCCACTGAACAAGAGACCTCGTTCAAGCAGGAAACTGAAGACAGAGTCCCGGTGAAGGACAGAAAGCCGAGCAGAGCGCAGAAGAAAGCCGTAGCTAAGAGAGTTTCTGCACTTCTGGAGGATCTGAATACAGCACTGGAGGAAACCAGCAATGTGGAGACCCTAAAGAAGCTAGATCTGCAGATCCGACAGCTCAACCATGTCTTAAAGAAGGACCTCGACGCTTCTCAGGTGCCTTCATCTCAGACACTGGCAGTAGAGGAAGAGGAAGTGCTGGGTAGTTTCGACTTTCTCTCTGCAGATTGTACTGAAGATGAAATGCCAATTATGAGCAGCATCAGACTCGGGAACActggGATTGGTTCGTTTAATGAGAGCACCCTGAAAAGCATGGGTCTGTTATGTCAGGAGCAGAGATGTGTGTCCTCAGAAGACAGCGCTGAAGGTCAGGTCAGACTGAGAGGAGACGCTGCAGTAAAAGCGTCCGTCACTACTGGAGTCTACAGTCTGGATCAGGCTCTTGAAACTCACCTCAGTGTCTGCGCTGTTCTGCTGAGGGCTCTTAAGCAGTCAGACTCTGATCTGGTGCACAAAGACATCATGGATGAACTCTCACGCCAAGTTAACGTGCTGGAAAAAATTGCTGCTTTGTCACAGAAATTGATAGATGAGATCTCAGCGGCGGACTtGTTGTCCAAAACTCCGAAGGGCATTGACGTGTTTTGGAAGGAGTGCTGTGAGAGTGATTCAGCTTTCTGCTGCTCCACGGAGGCTTTCCTCAGGGCGCTGCGCAAACATTACATCCACAAAGTCAAAGCCAAAGAGCCCGGCCAGACTGATGCAGTTTTCAGTCAGCTGCTGCATCAGGTGCAGTGCAGTGGGATGGTGGCGTCTGTTACTCTGTGCACTGCAGAGCGTCTCACTGTGTTTCAGCTGCTAGTTTACCTCAGCAGATGGAGTATTACTGACTTTGGGGAGCACATCTCTCTCCTCTCTAAAGAAGTGTATCTGATAGCCTGTCTGGAGAGTCCCAAGAGAAGACGAGCACTGAAGAAGCTGAAGGGGAAGCGCATCTCGGATCTGCAGCCAACGGGACGCATCCTCCAGCTGCTGGCCAAACTGCAGACTGACGCCAATCACAAGGTGGCTTCAGCGGCCTCGTCCTGCCTCAACCGGGCCTCGCGCTCCAAATCCTTCAGGGCAAAGGCAGTGGTTCATTACACCGATCTCTTGAAAAACAGCAACACGAATGTGCGGCATGAGGCCTGCCTGGCTCTGAAAAGTCTGAAGGCCTCAGAGAGTGCAGAGCAGGTTGCTGAACTGTGGCGGTCCGCAGACGAAGACCTGAGGAACGCTGCACGTGAGACAGTACTGTCCTTCGgtaAAAAAGGTCAAATGGCTTTCCAGCGAATGGACCAGATCTATGAGCTGCAGGATGAGGCTTACAAGAACCTGGAAACCGAAATCACGATCTTATAGCAGACCAAAGACCCGGTCCCTTACCTGATTGGACGGTGCTGAGACACTGACGTTTGTATTGGACACATTCcatatgtgtgtacatgtattgccaagtatttaataatatgcaggtttattattttatgtaattttaactttttattttaagtgaaGTATTTATGAATAAACTGTCTTCTATATTTCTTATGTATCAACATGAGTAAACGAAATATATtgacaataaatgtaaataagagAAC

Function

symbol description
ripor3 Orthologous to human RIPOR3 (RIPOR family member 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050220-13 Orthologous to human RIPOR3 (RIPOR family member 3).

Ensembl:

ensembl_id ENSDARG00000020979

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063154 False 706 lncRNA 0.44 2 51676227 51718896
TCONS_00063155 True 3525 mRNA 0.48 23 51713076 51763503
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032363 CR548633.1 coding upstream 601056 51075056 ~ 51075171 (+)
XLOC_032361 NA coding upstream 684214 50790189 ~ 50992013 (+)
XLOC_032362 NA coding upstream 843881 50825233 ~ 50832346 (+)
XLOC_032360 NA coding upstream 1103216 50568897 ~ 50573011 (+)
XLOC_032359 mych coding upstream 1221394 50451337 ~ 50454833 (+)
XLOC_032365 tmem74b coding downstream 10370 51773873 ~ 51780757 (+)
XLOC_032366 rspo4 coding downstream 61093 51824596 ~ 51843277 (+)
XLOC_032367 NA coding downstream 88570 51852073 ~ 51866260 (+)
XLOC_032368 angpt4 coding downstream 168764 51932267 ~ 52030817 (+)
XLOC_032369 abraa coding downstream 300801 52064304 ~ 52072829 (+)
XLOC_032356 NA non-coding upstream 1436839 50238969 ~ 50239388 (+)
XLOC_032370 NA non-coding downstream 353533 52117036 ~ 52210053 (+)
XLOC_032375 AL929108.1 non-coding downstream 540928 52304431 ~ 52304621 (+)
XLOC_032377 NA non-coding downstream 696049 52459552 ~ 52467126 (+)
XLOC_032378 NA non-coding downstream 704505 52468008 ~ 52484569 (+)

Expression

Expression of XLOC_032364(ripor3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Expression of XLOC_032364(ripor3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_15396096_15416084 FAM65C coding CI01000340 null 15395157 ~ 15416255 (+)