LOC110491693 (LOC106579137)


Basic Information

Item Value
gene id LOC110491693
gene name LOC106579137
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24521646 ~ 24560785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468862.2
accatgtcatacaattgattggctcaaacgcattaagaaggaaagaaattccacaaatgaacttttaacaaggtacacctgttaattgaaatgcattccaggtgactacctcatgaaggtgTTTGAGATAATTCCAAGAGTGTGtcaggctgtcatcaaggcaaaaggtactgtagctactttgaagaatctgaaatatattttgatttaacacatatttggctactacatgattccatgtgttatttcatagtttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccgtgaatgagtaggtgagtccaaacttttggctggtactgtatatcacataGATAGGCAGTCCTCTTTGTCATAGAGAATAAGAAATCCCACTCTATACGGTGCATTTCGATCTGCAAAGTTCTGAAACGTTTCACTCTTTTGAACAATCTCCAGATGCCACCAAGCACACTGTTTATGGGAGTCTGAAGTACAGGAGCTCCTCTTTAACAAGTGGGAATCATGTCCTGATGCTTTAGCCTGATAATGTGTAGTATGAGGACTTCATTAATTCCTGAGGAAGCTGGTAAGTGTTTTCACAAAAGGGGACTATTGAAGATGTAACACCGCTGTAGTTTTAAGCCCCTGCTAACCCTCAGTTTTGTGTCCTTTGTTCTAACTGCTTGTGCTGAAATATTGCAATATTACGTCATTTTAAAGTTGTATTTAAGTGTCATCCAGTGGACTACATGGGTAGCTTCATTTTCCATCCATTGCAATAATGTAAATTGGTATTCATAAAGAACATGTCGATATGATGTCTGTATCATTGTACATGACCTTATGAAGAATACAGATTTTTCATAGAAATGTATCTCCTGTGTTACCTTACTCTACAGTGCCTCTTGTTGTTATACTGGCGCACAATTGTAAGGATACAATTATTCTCTGGCTGTGACAGACCAATCATGCCCTCTGCTGGCCTTGCCCTCTCCTGACATCTTGAGTTCACACAGAACCAGGAAGTCACCGACAACAGAATACAAGccactccctcctactcctcagAAAACTAAACGTATCTCTGGTTCTCTTGCTATGTTTGTTAGTGTGTGCATCAAAATGGCAGAGGCCATGGACTCAATCAGTTGTCTGAGCTGTCTGGGTCTACTGAAGGATCCAGTGACTACTCCCTGTGGACACAGCtactgtattgactgtgttaAGTTCTGCCCCCAGTGCAGACCTTTATCCCAAGGCCTGTTCTAAAGAGAAACACTATGTTTTCTGAGGTCAccagaaacagaagaagacaggagTCCAAGCTgctctcccttctctgtccttTGCTGGACCTGGAGATTTGGAGAGCTGGGAGAAAAATAAAAGCTGTGATGTCCTGCCTGGTCTCTTAATGTGAGACTCACCTCCAGCCTTACAATGAAGTAGATCCATTAAAGAAGCACAAGCTAGTCAAAGCCTCCACACAACTACTGGAGGTTTTTAATGGATGAACATAAAAGCCATGAGACAGATACAGCTACAGCAGAAAGGACTGAGAAACCGTGACCTCATTTTAGATTGAACACCTTGCTGAGCCCAAGACCAGAGAGGAGTTAAAACAAAATACTCTTGCCAGCTGACATTGGATCCCAATACAGCACACACTAGCCTGTGTCTGTTCGATGGAGAACAGTAATGTTGCCAGGAGAGATTAGGCCCAGTCCTGTCCGAACCATCCAGACGGATATCCCTCCTACCAACAGGTGCTGTGTAGAGACTGTCTCTCTGGAACTTGCTACTGGAAGGTAGAGTGGAGCGGGGAAGGGGTTCATGTAGCTGTCTCGTATATAAACGGATCAGCACAAAAGAAGATAGTAATGAGTGTGTGCTTGGGAGGTAATGATCGATCCTGGAGGTTATACAGCTCTTCATTCAGCCGCTGTTTCATCCACAGTAATAACAGGACTGATATCCCTGTCCCCTGCTCCTCCAGAATAGGGGTGTACCTGGACCATGTGGCAGGAACAGTGTCCTTCTACAGCATCTCTGACACAGTGACCCTCCTCCACAGagtccagaccacattcactAAGTCCTTCTATCCTGGATTCTTTGTTCGCGTTGGAAATCCTGTGGAGATACTGACACCTGCTCAGTGATAAAGCTGTAGTCTGCTGGTACCATTGTTGTGAGCTTTAGAGAATGATTTGGGATTGCAGATATCAGAGTACAGTACtcatagaaaaaaaggtgctatatagaacctaaaagggttcttcggctgtccccataggagaaccctttgaagaacctttttggGCTCCATATAGAATCCTTTCCACAGAGGTTTCCACAACTCAAAAGGctcctacctggaaccaaaaagggttatcctatggggacacccgaataacccttttggaaccctttttttctacgAGTGCATAATAAATGTGCTTCATTTGCATATACAGAGGTGTAATTAAAACCGAGTGTAACAGACTGAGCCTTTGGTTCTCGAATGAACGTCAACGCGTAATGATGAGACACGCGTACACGTCAATGGTGGAAGTTTGATTGCCAGATGAAAGGGACCAATCATCATTGAGCTTAGTTGAGTCAGTCCGGGAGCGGAACACCGCTGAACAGTTCAAGGGGAGTCATTTGTAGTTGATCATTAAAGTATTTTGACTTAGTTGTTGCACTATATTTTGCACTATAACTGAAAAGTGTGTATTTGGAAAACTTGGTATGGAAGATAGTGAGACTCGTGCACCACATACACCTATAGACAATTTTGGTCTCTGTGGTTTATGTTTGCTGAATAATATTCACAATGTTACTTGTACCACATGCAACAACTTAATCAAAAGTCAAATAAATTGTACTTGCAAGGATACACTACCGCTTGTTTTTCATTTAGGATCATCATCCCAGTGTTTTCAATGAGGACATACAACAATTGTGAATCAAATTAGCTTTTATTAAAGTATTAGTGGTTAGGGAATGAGTCATTACATGGTACAGATTTCATATGCATTATTTAACCAACATGAaaaagagatgggggggggggggggg
>XM_036946587.1
accatgtcatacaattgattggctcaaacgcattaagaaggaaagaaattccacaaatgaacttttaacaaggtacacctgttaattgaaatgcattccaggtgactacctcatgaaggtgTTTGAGATAATTCCAAGAGTGTGtcaggctgtcatcaaggcaaaaggtactgtagctactttgaagaatctgaaatatattttgatttaacacatatttggctactacatgattccatgtgttatttcatagtttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccgtgaatgagtaggtgagtccaaacttttggctggtactgtatatcacataGATAGGCAGTCCTCTTTGTCATAGAGAATAAGAAATCCCACTCTATACGGTGCATTTCGATCTGCAAAGTTCTGAAACGTTTCACTCTTTTGAACAATCTCCAGATGCCACCAAGCACACTGTTTATGGGAGTCTGAAGTACAGGAGCTCCTCTTTAACAAGTGGGAATCATGTCCTGATGCTTTAGCCTGATAATGTGTAGTATGAGGACTTCATTAATTCCTGAGGAAGCTGGTAAGTGTTTTCACAAAAGGGGACTATTGAAGATGTAACACCGCTGTAGTTTTAAGCCCCTGCTAACCCTCAGTTTTGTGTCCTTTGTTCTAACTGCTTGTGCTGAAATATTGCAATATTACGTCATTTTAAAGTTGTATTTAAGTGTCATCCAGTGGACTACATGGGTAGCTTCATTTTCCATCCATTGCAATAATGTAAATTGGTATTCATAAAGAACATGTCGATATGATGTCTGTATCATTGTACATGACCTTATGAAGAATACAGATTTTTCATAGAAATGTATCTCCTGTGTTACCTTACTCTACAGTGCCTCTTGTTGTTATACTGGCGCACAATTGTAAGGATACAATTATTCTCTGGCTGTGACAGACCAATCATGCCCTCTGCTGGCCTTGCCCTCTCCTGACATCTTGAGTTCACACAGAACCAGGAAGTCACCGACAACAGAATACAAGccactccctcctactcctcagAAAACTAAACGTATCTCTGGTTCTCTTGCTATGTTTGTTAGTGTGTGCATCAAAATGGCAGAGGCCATGGACTCAATCAGTTGTCTGAGCTGTCTGGGTCTACTGAAGGATCCAGTGACTACTCCCTGTGGACACAGCtactgtattgactgtgttaAGTTCTGCCCCCAGTGCAGACCTTTATCCCAAGGCCTGTTCTAAAGAGAAACACTATGTTTTCTGAGGTCAccagaaacagaagaagacaggagTCCAAGCTgctctcccttctctgtccttTGCTGGACCTGGAGATTTGGAGAGCTGGGAGAAAAATAAAAGCTGTGATGTCCTGCCTGGTCTCTTAATGTGAGACTCACCTCCAGCCTTACAATGAAGTAGATCCATTAAAGAAGCACAAGCTAGTCAAAGCCTCCACACAACTACTGGAGGTTTTTAATGGATGAACATAAAAGCCATGAGACAGATACAGCTACAGCAGAAAGGACTGAGAAACCGgtgaCTTTGAATCCATTTCAGGAGAAGAAGAGGTGCGAAGTAGTGGAGGCGAAACAGCATGGAGGGTTACAGCAGTCGATGAGCAACGCCGACTGCAACCGGAAAGAGTGTGATATCTGTGGCCGGCGCTTTCATCCTGACCGTGTGGAGAAACACAGCCTGATATGTGCCAAGGTCGCCTCCGAGAGTAAAAGACGTGGGGTCTACGACTCCTTCAAGCACCGGTACAAGGGCACCAACCTGGACAGCTTCATCAAGCGATCTATTAATCCATGATTcatgtgatgtggtgtgttacCTGTCCTCCAAGGCTATAGGCCATCCTGACTATGACAAAGTTTAAAACTCTTCCCCTACTAGAGAAACCTTTTTATTTTCACTTCAATAAACAGTATACGTGAA
>XM_021565330.2
cctctcctctcccctccctggccCCTCCTCTCTGTCCGTGAGACTCCACCTCAACATTGTGGGGAAACCCAGCCCCCACCTCCCCCGGACCCAGACGGCCCATCCCTCTGggccccatccctctctctccagcatgGTTGGAATAGTTAGAGTGGCGCTGTGGACTGGCCGTCACATGCAAGCTCAGGCACAGCAACAGGAGGAACGTGAGgtgaCTTTGAATCCATTTCAGGAGAAGAAGAGGTGCGAAGTAGTGGAGGCGAAACAGCATGGAGGGTTACAGCAGTCGATGAGCAACGCCGACTGCAACCGGAAAGAGTGTGATATCTGTGGCCGGCGCTTTCATCCTGACCGTGTGGAGAAACACAGCCTGATATGTGCCAAGGTCGCCTCCGAGAGTAAAAGACGTGGGGTCTACGACTCCTTCAAGCACCGGTACAAGGGCACCAACCTGGACAGCTTCATCAAGCGATCTATTAATCCATGATTcatgtgatgtggtgtgttacCTGTCCTCCAAGGCTATAGGCCATCCTGACTATGACAAAGTTTAAAACTCTTCCCCTACTAGAGAAACCTTTTTATTTTCACTTCAATAAACAGTATACGTGAA
>TU1549006
cgcagtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttctgaggctggtaactctaatgaacttttcctctgtagcagaggttaCTCTGCgtattcctttcctgtgtcggACCTCTTGAGAGGaccgcttgatggtttttacgactgcacttcaataaacttttaaagttcttgaaatgttccgtattgactgaccatcatgtcttaaagtaatgatggactgttgtttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatatgtctatcttctgtataccaccactaccatgtcatacaattgattggctcaaacgcattaagaaggaaagaaattccaca
>TU1549004
cgtgaatgagtaggtgagtccaaacttttggctggtactgtatatcacataGATAGGCAGTCCTCTTTGTCATAGAGAATAAGAAATCCCACTCTATACGGTGCATTTCGATCTGCAAAGTTCTGAAACGTTTCACTCTTTTGAACAATCTCCAGATGCCACCAAGCACACTGTTTATGGGAGTCTGAAGTACAGGAGCTCCTCTTTAACAAGTGGGAATCATGTCCTGATGCTTTAGCCTGATAATGTGTAGTATGAGGACTTCATTAATTCCTGAGGAAGCTGGTAAGTGTTTTCACAAAAGGGGACTATTGAAGATGTAACACCGCTGTAGTTTTAAGCCCCTGCTAACCCTCAGTTTTGTGTCCTTTGTTCTAACTGCTTGTGCTGAAATATTGCAATATTACGTCATTTTAAAGTTGTATTTAAGTGTCATCCAGTGGACTACATGGGTAGCTTCATTTTCCATCCATTGCAATAATGTAAATTGGTATTCATAAAGAACATGTC
>TU1549000
TGTGAATCAAATTAGCTTTTATTAAAGTATTAGTGGTTAGGGAATGAGTCATTACATGGTACAGATTTCATATGCATTATTTAACCAACATGAaaaagagatgggggggggggggggggttaaacttAGACTTTAGTTGTTGtggggtcccccccccccccacatttgaTTTAAAATGTATCTTATTAAAAGCTAGAAAGGCACTGTTTAAAAAAATCATAGTTGCTGAATGTTATTTAAGCTTTGTGTACAAAGTAAGTATAAAATGTCATTCATGGCTGTTTGTTGCTTAATGTAAGTATTTTCACAGAGGGTTTGGAGACAGCGGAAGCAAATGAAGGTTCACTGGTTTTGCAATAAAGGCAGTTGCACTGCTATGGCAGTGATTGACATTATATACACTTACATACACGGAAATTAATGGTAGGAAAAAAACAGGATTATTCAGATCTGGGTTTGGAAACTGGGCCGTGTTCATTAAGCACCAAGCGAAAGAAAATTGACTTTTTAAGTAGGGACtaccttgtccaataagaaacgttcATTTCCCTGTTccgttttaaaatgttttctgtTCTATGCCACAATGAACAAGACCCAGGACATCAATGATACTGGAGTACTGTCTCCCCCTTTGTTACAGTTTGGAGGAAAAGTACGTTTCACCTCGCCTTCGATCAATTAATCCAACAATTTATCTGTTTAGTTTAAAATGTACGTTTTTAAAGTAAAATAGAGAACTCGTCTGTATGAGATCATTAACAACGGTGATGGTGCATTTATGTGCTTATGGAATAACCAGTGACTGTGAGTCTGTGAGCATGCACACATTAGGTCAGGATTAGATTGAACCCCAGCCTTATATTATCTCTTCACAAAACAATTGAATGTGTCAATAAAACTAAAAAGGGTTGAATTGGACATTGAAAACACTGATTCTAAACGCAACAAGATAATCAAAGCACAGTTGACTTGCATCAGCCAGGTTAAAAATGTTAGGGAAAACAAGTGCCTGGTATCAGCCCTTTGGGATTTAAGGGTTGCTCCTACATCAGTGAAAAAGTACTAGTTGATGGGCGGCTTTCGTAAGGAGATGCTGGTGTCAGCACTGCTGCTCTGTAAATGTCCCTAGGTTTAATATCATACATTGCCACTAGGTGGTGGACCTCATCAAAACACTTTTAAAGAGAGTAGATGTTGAAAAAGTGTTGGGAAAATGAGTCTGTAAGTGGCTGGTTAGTCTACCGTCAACTCAACACATAAGAAACTTTAAAACATTGATAAAACAAATGCTTGCTATTGTACAGGGTTTATATAGCACACCAGTGGCAGGATTTACATTTTTCCACCAGGATTGTGAAGAAATCGTATAAAATTGCTCCTTATCTTTGTTgtcacgtaaaaaaaaaaaaaagattttaatGACTTGCGATTTCACCAGAATGTCCTTTCTTATCTAAAACTCAGGCAGTGAATGAATACATGTGTGCGTAGTCTACCTACAGCACGAGTGACTTTCCATAAACGTCTCACAACCATTTTGTGTTTCTTGCAGATGTCAGGGTCCTTCATTTGAGCGCAGACCCCTTTGTTAGACTCTTTCTTCACAAACAACAAAAAGGTGACGGTATAAGATGCCATCTTTATCAAGAAAATACACCCAAATTACATGAACTGGTCATATTCACCATGCCTAcaggtaaagtgtgtgggtgtgtgtgtgtgggaaagcATGCGATGGGCAAACAGTGACAGAGAGCCACTGGGGGAGAATGGCTGCTCCTTTTTTCCATTCTGATTTTCCCCTGGCCCTTAGAGAGAATAGACacagtgagaaaaagagagaaatatatatagagagagagagcaagagagagaaaatagacactgtaagaaaaagagagaaatatagagagagaagagagaaatatagagagagaagagaaataaagagagacagaggaagagaaaaaaaatagagaaagaatggaagaaagagagaaaatggagaaagaaagaaagagattgaaagagcaagagagtaaagaaagagagaaaatgtggaaagagagagagtaatacAGTGTAGtggagagcgaggaggagagagagagagaacgtcggagtcacagagggagaggagaggagagattgcTATATAAAGTTATGGCATGCCGGAGGTCCCTCGGGGGGAACGGAGCGCGATGAATCACAAGCTCTGTTGTTGAGACATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468862.2 False 3093 mRNA 0.42 3 24521998 24528960
XM_036946587.1 False 1977 mRNA 0.42 2 24521998 24560785
XM_021565330.2 False 613 mRNA 0.53 2 24552572 24560785
TU1549006 False 407 lncRNA 0.40 1 24521646 24522052
TU1549004 False 510 lncRNA 0.40 1 24522308 24522817
TU1549000 True 2236 lncRNA 0.39 2 24528843 24540492

Neighbor

gene id symbol gene type direction distance location
LOC110491690 znf385c coding upstream 1065 24382241 ~ 24520933 (+)
LOC110491689 rab5c coding upstream 158607 24350009 ~ 24363391 (+)
kcnh4b kcnh4 coding upstream 210002 24242540 ~ 24311996 (+)
ghdc ghdc coding upstream 287329 24212179 ~ 24234669 (+)
LOC110491683 LOC106579144 coding upstream 320746 24166190 ~ 24201252 (+)
LOC110491694 atp6v0a1 coding downstream 2000 24562785 ~ 24602678 (+)
LOC110491695 NA coding downstream 45279 24606064 ~ 24607211 (+)
naglu naglu coding downstream 65897 24626682 ~ 24645022 (+)
LOC110491698 LOC106579132 coding downstream 109556 24670341 ~ 24681115 (+)
coasy coasy coding downstream 124145 24684930 ~ 24700595 (+)
G1355148 NA non-coding upstream 77247 24444301 ~ 24444751 (+)
G1355110 NA non-coding upstream 126966 24394659 ~ 24395032 (+)
G1355107 NA non-coding upstream 132015 24389763 ~ 24389983 (+)
G1355072 NA non-coding upstream 151277 24370423 ~ 24370721 (+)
G1354839 NA non-coding upstream 176272 24345385 ~ 24345726 (+)
G1355097 NA non-coding downstream 42112 24602897 ~ 24656808 (+)
G1355239 NA non-coding downstream 60910 24621695 ~ 24636240 (+)
G1355100 NA non-coding downstream 96732 24657517 ~ 24657836 (+)
G1355269 NA non-coding downstream 106808 24667593 ~ 24667950 (+)
G1354681 rpl19 other upstream 431964 24085708 ~ 24090034 (+)
G1354668 NA other upstream 526977 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 1033386 23430867 ~ 23488782 (+)
G1353660 NA other upstream 1223245 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 1395687 23123859 ~ 23134383 (+)
G1355273 NA other downstream 120629 24681414 ~ 24684055 (+)
dcakd dcakd other downstream 203854 24764607 ~ 24783513 (+)
znf281b LOC106578343 other downstream 1515756 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1744166 26283071 ~ 26314809 (+)

Expression


Co-expression Network