LOC110491698 (LOC106579132)


Basic Information

Item Value
gene id LOC110491698
gene name LOC106579132
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24670341 ~ 24681115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946588.1
CAAACTtcaaatggatcagccaaaggGCAAGGGTCCCTTTTTTCCAAAAACTACCACCTCACAATCTCCCTAAAATCAGCACGAACCCCTCCGGATGTAGCGCTCAAAAGTGCGTCCCACTTCTAAAGCAGCTGCTTCATCTCGATGTTCTTCTTTATCAATAGCTACCACGACGATTTCCCTTTTTCAAACACGCGGGCTCTTTCTCCCGGATTCATCGATTTCCTGGAGCGTGACGTCCCGGCCATCTAGAATCACAACAACAAGCTGACTTCTGCCCCATGGGAGCGTTTACATCGTTAGTCGACGCTTTACCGGACACAGACTAGTTTACAGACTATACTTTAACACAAAGTTTGCTCAAAATAATAGCCTCTTACATAGGCTTCATTTTCTTTACTAGATTTTGCGGGACGCGATGGAAGAAGAGCCTCATGGCAGGATATCGGTGAATAAATACCAACCGACGGAGTTGAAAGTCAAAGAAGAAGAGGACCATGGCGATTTCAGTTATCAAAGGCCAGGAGGGAGCCCAAACTCACACTCCGACAGTGGGAAGACTTCCTCGGAGTCAGGGGAATCAGACAGAGAGCTGCCCAAATCAGACAGACCGCACAACTGCTCTCTGTGCAGAAAGGGATTTTCCCAATTGGGACATCTGAAATTACACAATAAaacacatacaggagagaaacgCTATGGCTGTATTCAATGCGGGAAGAGTTTCGCAAGGTCAgactatttaaaaaaacatgcgAAAATTCACAGTGTAGAGAAACCATACAAATGCTCTGTGTGCTGCAAGGTATTTGCTAGGTCAGACATCTTAACCATACACACGAGAGTTCACACTTCAGAGAGGGTGCAGCGTCCCACCAAAGAGAAACTCTATCCCTGCTCTCAGTGCGGAAAGCGGTTCTCTCAATTGGGAAACCTCAAATCGCATGAGAGCGCTGTGCATGCAGGAAAGAAGCCTTTCAACTGTCCTGAATGCGGAAAGGGGTTCTCACATTTTGGTAACATGCAAAAACACCAGCGTgtgcacactggagagaaaccataCATGTGCCCTGATTGTGGGACAGGTTTTTCCAGATCACATCACCTCAAAACACATCAGCAAATTCATAAAGGGGAGAAGCCTCACTTATGCACTGAATGTGGGAAGGGTTTTGCTAGGGCAGACTCTTTAACGGCACATCAGCGAGTGCACAGGCTAGACAACAAGCCGTACGGATGTTCTGACTGTGGCAAAGCCTTCTCTTCATTTGGAAACTTAACACAGCATCAGAGAATTCACACCGGAGAGAAACCATATCAGTGCTCTCAGTGTGAGAGAAGCTTTGCTTTTTCAACAGATTTGAAAAATCATCAGAGGAGACACACTGGAATGAAACCATACTATTGCTCGGACTGTGGGAGAAGTTTCACAACGGCATCTTCCCTAAAATCACACCAGAAAATTCACAAATTATAAAAGTCATGGTCTCCGTGTGGTAGTAATGTCTCTCTACATTGTCAAACACTAGCGAAAACTCAGCTGTCTAAATTCTGCCGATGGGGAAACCTTGAGGAGGCTCACATTTTTCTTAGGAATACTAGAGGCACAATATTCTCATGGTTTAATCCTTGGTTTAAAAACAGCATAGGAATtcaatgttttgtttttaatacagTGATTTTGGTTAATTGGATGGTTATTTTTACACTGAAACTACCTGAATTGTTTTTACCCAGAAATCTCTTTAATGTTTGAATGTGTTTACTAGATAGCTCCAGTTGTGTGAATTTTATTCTATATATGTTGATAATGACAAGCAAAAAAACATGACTATAGGGAACAAGAATCTCCTGCAAATTATGTTAACTTTTTGTTGTATAACCTGCATTTGTCATAAGAGGGTCAGGACACATTACATTGCAATCACAAAACATATGCAATGTCATAAGTTATATTGACAATAAACTTTAGTTGCAAACTCA
>TU1549199
AGCGCTCAAAAGTGCGTCCCACTTCTAAAGCAGCTGCTTCATCTCGATGTTCTTCTTTATCAATAGCTACCACGACGATTTCCCTTTTTCAAACACGCGGGCTCTTTCTCCCGGATTCATCGATTTCCTGGAGCGTGACGTCCCGGCCATCTAGAATCACAACAACAAGCTGACTTCTGCCCCATGGGAGCGTTTACATCGTTAGTCGACGCTTTACCGGACACAGACTAGTTTACAGACTATACTTTAACACAAAGTTTGCTCAAAATAATAGCCTCTTACATAGGCTTCATTTTCTTTACTAGATTTTGCGGGACGCGATGGAAGAAGAGGTACATTTGGCATGCCTGTTTCACCATTGCCCCTTTGCTTTGGTTAATGTCTGCTACAACTTTGAGGCAGGAGACACACTTCTCGTGGAGCTCTTGTAGGATTTTGCGCGCGATATAGGCTACTCGTGCTTTTTTATAGAATGCGTTCATGCTCATTAATCTATACATTTATCTACGCAGCCTCATGGCAGGATATCGGTGAATAAATACCAACCGACGGAGTTGAAAGTCAAAGAAGAAGAGGACCATGGCGATTTCAGTTATCAAAGGCCAGGAGGGAGCCCAAACTCACACTCCGACAGTGGGAAGACTTCCTCGGAGTCAGGGGAATCAGACAGAGAGCTGCCCAAATCAGACAGACCGCACAACTGCTCTCTGTGCAGAAAGGGATTTTCCCAATTGGGACATCTGAAATTACACAATAAaacacatacaggagagaaacgCTATGGCTGTATTCAATGCGGGAAGAGTTTCGCAAGGTCAgactatttaaaaaaacatgcgAAAATTCACAGTGTAGAGAAACCATACAAATGCTCTGTGTGCTGCAAGGTATTTGCTAGGTCAGACATCTTAACCATACACACGAGAGTTCACACTTCAGAGAGGGTGCAGCGTCCCACCAAAGAGAAACTCTATCCCTGCTCTCAGTGCGGAAAGCGGTTCTCTCAATTGGGAAACCTCAAATCGCATGAGAGCGCTGTGCATGCAGGAAAGAAGCCTTTCAACTGTCCTGAATGCGGAAAGGGGTTCTCACATTTTGGTAACATGCAAAAACACCAGCGTgtgcacactggagagaaaccataCATGTGCCCTGATTGTGGGACAGGTTTTTCCAGATCACATCACCTCAAAACACATCAGCAAATTCATAAAGGGGAGAAGCCTCACTTATGCACTGAATGTGGGAAGGGTTTTGCTAGGGCAGACTCTTTAACGGCACATCAGCGAGTGCACAGGCTAGACAACAAGCCGTACGGATGTTCTGACTGTGGCAAAGCCTTCTCTTCATTTGGAAACTTAACACAGCATCAGAGAATTCACACCGGAGAGAAACCATATCAGTGCTCTCAGTGTGAGAGAAGCTTTGCTTTTTCAACAGATTTGAAAAATCATCAGAGGAGACACACTGGAATGAAACCATACTATTGCTCGGACTGTGGGAGAAGTTTCACAACGGCATCTTCCCTAAAATCACACCAGAAAATTCACAAATTATAAAAGTCATGGTCTCCGTGTGGTAGTAATGTCTCTCTACATTGTCAAACACTAGCGAAAACTCAGCTGTCTAAATTCTGCCGATGGGGAAACCTTGAGGAGGCTCACATTTTTCTTAGGAATACTAGAGGCACAATATTCTCATGGTTTAATCCTTGGTTTAAAAACAGCATAGGAATtcaatgttttgtttttaatacagTGATTTTGGTTAATTGGATGGTTATTTTTACACTGAAACTACCTGAATTGTTTTTACCCAGAAATCTCTTTAATGTTTGAATGTGTTTACTAGATAGCTCCAGTTGTGTGAATTTTATTCTATATATGTTGATAATGACAAGCAAAAAAACATGACTATAGGGAACAAGAATCTCCTGCAAATTATGTTAACTTTTTGTTGTATAACCTGCATTTGTCATAAGAGGGTCAGGA
>TU1549194
AACAACAAGCTGACTTCTGCCCCATGGGAGCGTTTACATCGTTAGTCGACGCTTTACCGGACACAGACTAGTTTACAGACTATACTTTAACACAAAGTTTGCTCAAAATAATAGCCTCTTACATAGGCTTCATTTTCTTTACTAGATTTTGCGGGACGCGATGGAAGAAGAGGTACATTTGGCATGCCTGTTTCACCATTGCCCCTTTGCTTTGGTTAATGTCTGCTACAACTTTGAGGCAGGAGACACACTTCTCGTGGAGCTCTTGTAGGATTTTGCGCGCGATATAGGCTACTCGTGCTTTTTTATAGAATGCGTTCATGCTCATTAATCTATACATTTATCTACGCAGCCTCATGGCAGGATATCGGTGAATAAATACCAACCGACGGAGTTGAAAGTCAAAGAAGAAGAGGACCATGGCGATTTCAGTTATCAAAGGCCAGGAGGGAGCCCAAACTCACACTCCGACAGTGGGAAGACTTCCTCGGAGTCAGGGGAATCAGACAGAGAGCTGCCCAAATCAGACAGACCGCACAACTGCTCTCTGTGCAGAAAGGGATTTTCCCAATTGGGACATCTGAAATTACACAATAAaacacatacaggagagaaacgCTATGGCTGTATTCAATGCGGGAAGAGTTTCGCAAGGTCAgactatttaaaaaaacatgcgAAAATTCACAGTGTAGAGAAACCATACAAATGCTCTGTGTGCTGCAAGGTATTTGCTAGGTCAGACATCTTAACCATACACACGAGAGTTCACACTTCAGAGAGGGTGCAGCGTCCCACCAAAGAGAAACTCTATCCCTGCTCTCAGTGCGGAAAGCGGTTCTCTCAATTGGGAAACCTCAAATCGCATGAGAGCGCTGTGCATGCAGGAAAGAAGCCTTTCAACTGTCCTGAATGCGGAAAGGGGTTCTCACATTTTGGTAACATGCAAAAACACCAGCGTgtgcacactggagagaaaccataCATGTGCCCTGATTGTGGGACAGGTTTTTCCAGATCACATCACCTCAAAACACATCAGCAAATTCATAAAGGGGAGAAGCCTCACTTATGCACTGAATGTGGGAAGGGTTTTGCTAGGGCAGACTCTTTAACGGCACATCAGCGAGTGCACAGGCTAGACAACAAGCCGTACGGATGTTCTGACTGTGGCAAAGCCTTCTCTTCATTTGGAAACTTAACACAGCATCAGAGAATTCACACCGGAGAGAAACCATATCAGTGCTCTCAGTGTGAGAGAAGCTTTGCTTTTTCAACAGATTTGAAAAATCATCAGAGGAGACACACTGGAATGAAACCATACTATTGCTCGGACTGTGGGAGAAGTTTCACAACGGCATCTTCCCTAAAATCACACCAGAAAATTCACAAATTATAAAAGTCATGGTCTCCGTGTGGTAGTAATGTCTCTCTACATTGTCAAACACTAGCGAAAACTCAGCTGTCTAAATTCTGCCGATGGGGAAACCTTGAGGAGGCTCACATTTTTCTTAGGAATACTAGAGGCACAATATTCTCATGGTTTAATCCTTGGTTTAAAAACAGCATAGGAATtcaatgttttgtttttaatacagTGATTTTGGTTAATTGGATGGTTATTTTTACACTGAAACTACCTGAATTGTTTTTACCCAGAAATCTCTTTAATGTTTGAATGTGTTTACTAGATAGCTCCAGTTGTGTGAATTTTATTCTATATATGTTGATAATGACAAGCAAAAAAACATGACTATAGGGAACAAGAATCTCCTGCAAATTATGTTAACTTTTTGTTGTATAACCTGCATTTGTCATAAGAGGGTCAGGACACATTACATTGCAATCACAAAACATATGCAATGTCATAAGTTATATTGACAATAAACTTTAGTTGCAAACTCATTTGAAGCATTTATGCTTTAATTTAGTCCTCTGACactagttcagttggtagagataagagtgtctgctaaatggcatactgactggctgcatcactgcttggtatggcaatagcacccCCCTCGATCGCCTGGCGCTACAAAGGGTTGTGCGGACAGctaagtacatcactggggctgagctccctgccatctaggacctctatcaGGTGGTTGACTTGACAGCTCATGCAGTTTTAGTGTTCTGATTAcagagttctgatcatggaaCACCATGTGTCTACACCTACACAGTTGCCACATTAAAAAAACTGTGATACTct

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946588.1 False 1983 mRNA 0.43 3 24670341 24680793
TU1549199 False 1991 TUCP 0.43 2 24670439 24680719
TU1549194 True 2227 TUCP 0.42 2 24670599 24681115

Neighbor

gene id symbol gene type direction distance location
naglu naglu coding upstream 25320 24626682 ~ 24645022 (+)
LOC110491695 NA coding upstream 63130 24606064 ~ 24607211 (+)
LOC110491694 atp6v0a1 coding upstream 67663 24562785 ~ 24602678 (+)
LOC110491693 LOC106579137 coding upstream 109556 24521646 ~ 24560785 (+)
LOC110491690 znf385c coding upstream 149408 24382241 ~ 24520933 (+)
coasy coasy coding downstream 4137 24684930 ~ 24700595 (+)
pus3 pus3 coding downstream 69315 24750108 ~ 24759143 (+)
dcakd dcakd coding downstream 83814 24764607 ~ 24783513 (+)
LOC110491705 ud2a2 coding downstream 145370 24826163 ~ 24829318 (+)
ccr10 LOC106579362 coding downstream 176719 24857512 ~ 24861130 (+)
G1355269 NA non-coding upstream 2391 24667593 ~ 24667950 (+)
G1355100 NA non-coding upstream 12505 24657517 ~ 24657836 (+)
G1355097 NA non-coding upstream 13533 24602897 ~ 24656808 (+)
G1355239 NA non-coding upstream 34101 24621695 ~ 24636240 (+)
G1355273 NA non-coding downstream 1123 24681414 ~ 24684055 (+)
G1355304 NA non-coding downstream 60266 24741059 ~ 24741347 (+)
G1355305 NA non-coding downstream 60562 24741355 ~ 24741580 (+)
G1355352 NA non-coding downstream 184261 24865054 ~ 24870076 (+)
G1354681 rpl19 other upstream 580307 24085708 ~ 24090034 (+)
G1354668 NA other upstream 675320 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 1181729 23430867 ~ 23488782 (+)
G1353660 NA other upstream 1371588 23298457 ~ 23298753 (+)
LOC110491658 LOC106579351 other upstream 1544030 23123859 ~ 23134383 (+)
znf281b LOC106578343 other downstream 1395748 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1624158 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2648518 27329311 ~ 27332275 (+)

Expression

LOC110491698(LOC106579132) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

LOC110491698(LOC106579132) Expression in each Bioproject

Bar chart with 20 bars.
LOC110491698(LOC106579132) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G309347 NA non-coding NW_019172852.1 APWO02000119.1 657704 ~ 659735 (-)