pus3 (pus3)


Basic Information

Item Value
gene id pus3
gene name pus3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24750108 ~ 24759143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565345.2
AGGAAATAAGTCCGTCTAGAATTTGCGTCTGATTCAGAACGAACTGAAGCGTTAATTCCGAGGTAGAGGCACGAGTTGAAGCATGCATTGTCACGTTTTACCAAAGTATCTTGATAGGGAATGATAACCTTACTCATCAAAGCTACACGTCAAAGTAAAGATAAGTTATTTTGCCGTTTGCAAAGCAACATGTCTGAGGAATTACTACAGCGAGTGAGAgacctggaaggagaggtggggagattGAAAGCACAGCTGAGAGAGAAGGTCAAGGAAGGAACTGGGGGTGAGATGGCGGTGTCAACCAACTCTGATGGAAAGAAGGATACCAGCAAGCCTGATGCTGGTGGCAGGAAAAAGGGCAAAAGAGGGAGTCGGGACCGACCGTTTGATTTCTCTGCCCATCCTCGGCGCCATGTTGCACTCCGCTTAGCCTACCTGGGCTGGGCCTATCAGGGCTTTGCTGTCCAGGAGAACACAGACAACACTGTGGAAGCCCGGCTCTTCGAGGCTCTTCTGAAGACTCGACTGATCCAGGATCGCCAGAGTTCTAACTATCACCGTTGTGGCCGCACTGACAAAGGAGTCAGTGCCTTTTCCCAGGTCATGTCCATAGACTTGCGCTCCACTCAGTTTTGTGGAGGCCTAGGAGTGACTCTCCCTTCCAATGTCGATGCTGGTGTCAAGAACGAAGTGGACGTGGCGGAGCTACCTTATGTGAAGATGCTGAACAGAGTCCTGCCCCAGGACATCAGGATTCTCGACTGGTCACCTGCTCCGCAGGGCTTCAGTGCGCGCTTCGACTGTCAGTCTAGAACCTACCGGTACTACTTCCCACGCGGGGCTCTGGATGTAACGTTGATGGCAGAGGCTGCCAAACGCTACGAGGGCACTCACGACTTCCGCAACCTCTGCAAGATGGACGTGGGCAACGGAGTGCTGCAGTTCCAGAGGACCATCCTGTCTGCCACGGTCCAGCCTGTCCATCAAACTTCCCCTCCTGCGCCCACTACCGCAGACCCATACGACCTCTACATATTTGAGATCAAAGGACTGGCCTTCCTCTATCACCAGGTGCGGTGCATAATGGCAGTGCTGCTGCTGATTGGCCAGAAGCTGGAGCCCCCAGAGATAGTGGATCAACTCCTGGATGTGAAGAAGAATCCCAGGAAACCCCAATACAGCATGGCGGTGGACTTTCCCCTGGTGCTGTTCGACTGCCATTTTGAGGGGTTGAGTTGGCGCAGGGAGGCTGAGGAGGTGGAGCATGCCCTGACCACGCTGCAGCACCACTGGACACAGACAGCAGTCAAGACCCAGGTCATTCACGGCATGATCCAAGGCCTAGACAGCACAGGTGGGACCTCCTCTCCCCATTGCTGGCTGATGGAAGGTACCAAACAGCGGACCTATCGGCCCTTGCTTGAGCGTCCACGCTGCGAGAGCCTGGAGTCCAGGATAGAACACTTTGTTAAAAGAGGCAGGCTTGAACGAGAAGAAGGGGAAAATGGTGGCGAAACGGTACACAAGGGCAAAAGGCCAAAGCACTCGCACAATACCTCCATTTCGTCTGTCCTCCCCGACGTGTCGCCGTCCTTCTGACCCCAGGGCCAATTAGAAACCATAAGATTGACACCTGCTAGAGAAATTGGACTTATCATATAATATTGTCTGAATTCTTAATGctgttattttacttttagattatttttttatgtaatgGAGAAACAATTGTAGGTTTTTGTTATTCTCTGGAATAAATCAATTTGAGATTCATCCGAAAGGGTTTAAAAGTCTAATGGAGAACTTGGATAGGGGATTAAAATAACCTTTCATCATTGAAGATTTGTCAAGTTATGTGGCCCACCCATAGAATTAGAATTAAttatagtaatttaataggatctctgttCCCACCAAGGAAGCTCAAGTCAACATTTGTCACAATCAGGCAGAACCTTTCGTAGAATTCGAGTGAATACTGGGAGCTTATTATCGATGCACTGAGCTAAACTAGCTCGTAAGCTAAAGAAAGTTGACTAGCTAACTTGGATGTTTCTTACCTAACCACAGATGGAACAATGAACCAGATGTATAAatctgaagcatccggttggcatTTCCAATCACCACCAAATATgttgatgagaggaagcccagtggccggcatTGGAGGAAGATGGcgcgagatggattttggccaacATTCTGCAAATTTTCTCATCTATTAAACACTTGATCGCAATAGCTCTGCCTCCTTTCaacgcagatgcggaagtgcgacatcggcggatgcagtggattgagatgcatccatTGCAAAacccagatatctctagcttaaactgacagattttgatgatgatttttttcAAAATGATGTTATATAGATTGACATACTTGTAACATTCTCAGAACACCACCAATTGTGTGCTATTCTAGGTACCCAAGGCAGAGCATCTATCCTCTCAGAACAGAGATTGTCATTGTTGGCTTGCAAAAGAATCAAGGCACATCAACACAGTGATCCTCGAAATGAGATTTTACAAGTTCAAGGTAAACATTAATTATGTTATCACTGAACCAATTTCCATTGCTTATTGTATCAATATTCTTAGCTGTGAATGAAGACATTTTCCTCTGAGTTGGCTTagtcgactaacctgtaccccagcacattgactctgtatttattttgatttatcctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcattgcGACACAACAACAGAGTTATACGTGGAATAAacagcgtacagtcaataacacaatagtaaaaaagaaagtctatatacagtgtgtacaaatgccGTGAGaaggaaaggcaataaataggccgtagtagcgaagtaattacaatttagcaaattaacacgagtgatagatgagcagatgatgatgtgcaagtataaatactggtgtacaaaagagcagaaaagttttaaaaaacaatatggggatgaggtaggtagattggatgttcTATTTACACATGAGCTATGCACAGCTGTATCGATCGGTTAGCTGCcctgatagctgatgtttaaagttagtgagggaaatataagtctccagc
>TU1549246
agatgagcagatgatgatgtgcaagtataaatactggtgtacaaaagagcagaaaagttttaaaaaacaatatggggatgaggtaggtagattggatgttcTATTTACACATGAGCTATGCACAGCTGTATCGATCGGTTAGCTGCcctgatagctgatgtttaaagttagtgagggaaatataagtctccagcttcagcgttaaaaaaataataatattgcaaatcgttccagtcattggcagcagaaaactggaaggaaaggctttgtggatgaccagtgagatataccttctgAAGCGTGTGCTACTgctgggtgttgttatcgtgaccagtgagctgagataaggcggagctttacctagcatagacttatagatgacctggagccagtgggtttggcgacaaatatgtagcgagggccagccaactacagcatacaggtcgcagtggtgggtgggaTATGGGTATctgttccccctgtatatagccttgttaatgttattttaatgttaatttttttttttaaatgtagtaaccggttgtattcggcgcatgtgagtTGAATGCCTTTTATGTTAAAGAATCACATTCcttgcagttgacagtgcataagTGAATGACTTCTTTCAGACCAAAGTGGAGAACCTCTACACTACTTGTGTGGTCCCTTGTGGCTCAGTTTGTAGAGCATGGCATTTGCAATGCCGGGGTTGTGGGTTTGaatcccatgggggaccagtacaaagGAAAATATGCACTCACTACTCTAAGTCGCTCTGGTTAAGAGCGTCTGTGCTACATTATTAAAATGTCAATTGCAGCTAGACAACGTGTCTTTGTGCAGCTATTTGTTGAGTGATTCAAATCTATAGCCCACTGATGACTCATGTCTCAGTGCAGTTTACGTGCCAAAGATGGTTGTGACATGTATACAATTTCACAAATGGGTATTAGTCTGAAAATGTGACTACTGGACAAATTCTATGTATGTTTGATAAATATGCAAGGTAGAGGAAAGCTACTAGGTCATTTGATCCTAGCCATGTCCATTTTTACAAGCAAAGTCTGTGGGGCATGGGTTACATAAAAGCTTGATCGTTGAGAGCCTTTTGAGTTCTTAGATATATTGCGCATACTTCTCTGTCGATTCGAACCAACAAGGTATTTCTTGCTGCAGAAATGTCCCTGTAGTCTGGCCATACACTGCCTGGGTATCACACTGACTGGAAATGTTTAGACTGAATTTAGAGAATATCATTTGCGGGTGGATTTTCCTGAACACTAATGTTCAACTATGTCCTTTACACCACTGTAATGCAGTTCTTGAACCGTGGGTTGTAAAAATGTCACTGAGTTCAATGCTTCAAACTGGGAAATTAGACTTTTTGAAGTGAGGAGACGGTTTCCATTGGTTAGCTCTAAGTAATCTATTATGGCAGCCAGAGAATTCTGATGCAGTATTGAGAAAGATGTAAATGGGTAACATTTTATCTACTGTGTGactggaaagtattcatactgtgGAGTTACAGAAATGATATCATTCTGAATCAAGTTTTGTTTGTGTCTGAGGCTCATTTAACTACTTCATAGGAATATAAAACCCCTTCTGTCCAATCCCTTCCCTAGTCGTGCCAACTGAAATGTGTAAGTCATTTGCCCGTATCTTAAGTGTTCAAATCTAGCTCTGACCAGAAAAGCCCCCTTGTTGATTTTGTGCCTGAGTGAAATATTACAGAACTCAATCTGTACATCTGTTTCTTGTTGCCAACAACTGGGATTTCAATTGTACTGGATGGAAAAATGGGGCCTCTTAACTGTAACATTTTCTGCTACACGGGTACAACAAGAACAAttagtatctggtgtggtggTCCACTACACTGTAAATTCTGATCATTGTTCATCCCGGTCTTTTTATTAAGACTGAACGATTTAGAATGTATAGCTGGAGGAATTTGAAAAGACCTTCAGAGATACTTTGGTTCTTTATTTTCCTTTTTCACAGCTTTCCTCAGGTTAGCAGCTTTGTGTTTTTTTGGGATTGCGAAGTTTGATTTCCTCACGTCTCTCTGGCCAGCTTTATGCGGAG

Function

symbol description
pus3 Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Predicted to be active in cytoplasm and nucleus. Orthologous to human PUS3 (pseudouridine synthase 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565345.2 False 3143 mRNA 0.46 7 24750108 24757243
TU1549246 True 2094 lncRNA 0.40 1 24757050 24759143

Neighbor

gene id symbol gene type direction distance location
coasy coasy coding upstream 49513 24684930 ~ 24700595 (+)
LOC110491698 LOC106579132 coding upstream 69315 24670341 ~ 24681115 (+)
naglu naglu coding upstream 105087 24626682 ~ 24645022 (+)
LOC110491695 NA coding upstream 142897 24606064 ~ 24607211 (+)
LOC110491694 atp6v0a1 coding upstream 147430 24562785 ~ 24602678 (+)
dcakd dcakd coding downstream 7364 24764607 ~ 24783513 (+)
LOC110491705 ud2a2 coding downstream 68920 24826163 ~ 24829318 (+)
ccr10 LOC106579362 coding downstream 100269 24857512 ~ 24861130 (+)
ifn5 cd79b coding downstream 131858 24889101 ~ 24897741 (+)
trnaa-ugc-127 NA coding downstream 274086 25031329 ~ 25031399 (+)
G1355305 NA non-coding upstream 8528 24741355 ~ 24741580 (+)
G1355304 NA non-coding upstream 8761 24741059 ~ 24741347 (+)
G1355273 NA non-coding upstream 66053 24681414 ~ 24684055 (+)
G1355269 NA non-coding upstream 82158 24667593 ~ 24667950 (+)
G1355100 NA non-coding upstream 92272 24657517 ~ 24657836 (+)
G1355352 NA non-coding downstream 107811 24865054 ~ 24870076 (+)
G1355356 NA non-coding downstream 113717 24870960 ~ 24871288 (+)
G1355357 NA non-coding downstream 114786 24872029 ~ 24872612 (+)
G1355366 NA non-coding downstream 123585 24880828 ~ 24881093 (+)
G1354681 rpl19 other upstream 660074 24085708 ~ 24090034 (+)
G1354668 NA other upstream 755087 23993618 ~ 23995021 (+)
LOC110491671 LOC106579157 other upstream 1261496 23430867 ~ 23488782 (+)
znf281b LOC106578343 other downstream 1319298 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1547708 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2572068 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2803904 27561141 ~ 27595350 (+)

Expression


Co-expression Network