ccr10 (LOC106579362)


Basic Information

Item Value
gene id ccr10
gene name LOC106579362
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 24857512 ~ 24861130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567359.2
TCAACAACAACTTCTTTGATAGGCTATAGACAAACATATGGTAAAGGTGTGTGTCCCAGAGATTGACATCTCCCAAACAAGTCACTGCTACAGAGGAGGGCTTCAGGACATGTCTGTCACTGTTGACAGCAGAAATATGGATCTCACAAGCTTTTTTGGCATGGATTACGATCACAGCCTGGTGACAGGGGACTACTTTGACTACAACGACACTTCCACCAGAGGCTACGAGCTGATTGAGCGTTGCGAAGCCATCGAGCAACAGCGGACCATCAAGGTCTTCCAGACCTGTGTCTTCCTCCTGGTTTTTCTCCTGGGCCTGCTCGGCAACTCCCTGGTCATCGCCACCTTTGTTCTCTACCGCCGCCTGCGTCTCCGCTCCATGACTGACATCTTCCTCTTCCAGCTGGCCCTAGCCGACCTCCTCCTACTCCTTACCCTGCCCATCCAGGCTGGGGACACCCTCCTGGGCCACTGGGCCTTCGGCAATGCCCTGTGCAAGGCAACGCATGCTAGCTACGCTGTCAACACCTACAGCGGGCTGCTGCTGTTGGCCTGCATTAGTGTAGACCGCTACATGGTGGTGGCTCGGACCCAGGAGGTGCTGAGGCTACGTAGCCGCATGCTGACGGGTGGCAAGCTGGCCTCGTTGGGCGTCTGGCTAACTGCCCTGCTCCTTAGCCTGCCCGAGATCCTCTTCTCCGGGGTGGAAAGAGAACAGGAGGGGGAGGCACACTGTGGCATGAACGTGTGGGTGGAAGAGAGCTGGCGGGTCAAGACGGCCACCCGCTGCGCCCAGATTGCCGGCTTCTGCCTGCCCTTCCTTGTCATGGTAGCCTGCTACTCGCTGATTGGCCGAGTGCTGTGTGAGGGGCGGGGGCGGGGGGGCTGGCGGCGCCAGCGAACCCTGAGGCTGATGGTGGTGCTGGTGGCCGTCTTCCTGCTCTTCCAGCTGCCCTACACCGTGGTGCTCTCCCTCAAGGTGGCAGGGCCAGGGGCTGCCAAGCAGACTTGCGATCAGTGGGCTGCCACACTGCTGAGGGAGTATGTGACTTGCACCCTGGCATATACCCGCTGCTGTCTCAACCCCCTCCTCTATGCCCTGGTGGGTGTCCGCTTCAGGGGCGACGTTCTGAAGCTGCTCCACGGCGTTGGCTGCCTGTGCTGGGCCGTGTCTGGGCCTCACCTGGAGAGCTGTACCTCGGGGTCACCCTCCTCCCTGGGCTTAACCACGCTCTCCCCCCTGCCGCCCAACTCACCTCTGCTCCTACCCCCCGACACCCTGGCACACAGCGTCAAATATCAGCCTCCAACAGCAAGCCATCCCTCTGGCCCGACCAAGGTGTTTCTCTTCCCTAGTAGGCCTACCCTGCCCTCAGATGGCCTGCTTCAGTTCACTGTCTCCAAAACCAAACCAGTCTAAACCAATCTTTGTATAGCTTGTGCGATCCTTATCAGGACTCACTTTTATATTAATCGTTAATTGATTCTATTCAATTGTATTTCACTATAGTGTCCACTTTTATAATATATCTTATGTGCATTAATTGTGTATTACTGTAATCAAGCAGTGCTTGTGGGACTGTGACTGTATGTTTCCACTTGTGACAGC

Function

NR:

description
C-C chemokine receptor type 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567359.2 True 1612 mRNA 0.57 2 24857512 24861130

Neighbor

gene id symbol gene type direction distance location
LOC110491705 ud2a2 coding upstream 28194 24826163 ~ 24829318 (+)
dcakd dcakd coding upstream 73999 24764607 ~ 24783513 (+)
pus3 pus3 coding upstream 100269 24750108 ~ 24759143 (+)
coasy coasy coding upstream 156917 24684930 ~ 24700595 (+)
LOC110491698 LOC106579132 coding upstream 176719 24670341 ~ 24681115 (+)
ifn5 cd79b coding downstream 27971 24889101 ~ 24897741 (+)
trnaa-ugc-127 NA coding downstream 170199 25031329 ~ 25031399 (+)
mapta NA coding downstream 184562 25045692 ~ 25092985 (+)
LOC110491714 LOC106579122 coding downstream 304256 25165386 ~ 25191533 (+)
zdhhc6 zdhhc6 coding downstream 341291 25202421 ~ 25213711 (+)
G1355305 NA non-coding upstream 115932 24741355 ~ 24741580 (+)
G1355304 NA non-coding upstream 116165 24741059 ~ 24741347 (+)
G1355273 NA non-coding upstream 173457 24681414 ~ 24684055 (+)
G1355269 NA non-coding upstream 189562 24667593 ~ 24667950 (+)
G1355352 NA non-coding downstream 3924 24865054 ~ 24870076 (+)
G1355356 NA non-coding downstream 9830 24870960 ~ 24871288 (+)
G1355357 NA non-coding downstream 10899 24872029 ~ 24872612 (+)
G1355366 NA non-coding downstream 19698 24880828 ~ 24881093 (+)
G1354681 rpl19 other upstream 767478 24085708 ~ 24090034 (+)
G1354668 NA other upstream 862491 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 1215411 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1443821 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2468181 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2700017 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 3041920 27902972 ~ 27986259 (+)

Expression


Co-expression Network