LOC110491714 (LOC106579122)


Basic Information

Item Value
gene id LOC110491714
gene name LOC106579122
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25165386 ~ 25191533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565388.2
CCAGACAATAAAAGCAAGAGAGAGCTGACAGACGGCAGCTCAGGCTCAACCTCAGCATCCTTTAAGGTGGTGGGCAACCGAGAAATGACTGCGAATTAATTGTCAACAGCCCAGTAACCCGCCCGGGAGAAATATGGATGTATGGCCGCCGAATTTGGAATAGAGATGTAGTTTCAAGGATGTCACCCATTTACATCTCTCGTTTGTTCCTCTTTATTTTTATCTCCGCGGTCTGGGAGACGCGAGCCAAATCTCTTCCAGATCAAGGAGCACTTGAGGTCCAGATCAGAGTTCAGGTGTTCGACAACAGTGACCTCTCACCTTTGGCCGGCGCCGCCATAGAGGTTCATGGGAACCGGTCTGTGTTAGCGtccagccaggcaggcagtgaTGGCGTGCTTAGGGTGACCTTCCTGTACCACCCGGGGACCTGGGTCATCATTTCAGCGTCCAAACACGACTATGTCACCAACTCCGTCCCCTGGCACGCTAGCCGCATCCCTCTGTATGCATCGGTCAGCTTGTACCTCCTAGTCCAGAGGCCAGGCACCCTCATTCTCTATGATGATGTCATCCAGGTGCTGCATGGATCCCCAGGTGCACGGAACCAGCCATTGGTCCAGCTCCAGAGAAAGTCCCTTCAGCTGCCAGCTGATTCCAACTACACAGCACTATCGGCTGTGCTGACTACTGCCAGAAGCCAGTATGAGATCGGGGGCTTCCCGTACCTCCTGGGCCTGGAAACCAACAGCACAGgggcagagacaggatggacagacTTAACAGCACTGGCGGTGGTCAGCGTTCAGCTCTTTGACCACGATGGGACCGCCATCCAGGTGTCTGACCCGGTTCACGTCTCCGTACCGCTGCCCTCGGATACTCGCACCAGGATCGCCACCAGCATTCCCGCCTGGCTGTACCAGCCCAAGACGGGTCTGTGGGTCAGGAATGGAACTGGCTACATTAAAAAAGAGGGCACACAACTAATCTGGAACGTGGTCGTTCCCCAGTTGGGGTATTGGGTCGCAGCCTTCCCTTCATCTGCAGGCGTGGGTCTGGGCGGTCACTCGGGCCTGAGAGACATCACCACCTACCACACCCTGTTCCTGCTCTCCATCCTGGGTTCGCTGGCCCTGCTGGTGCTCATCCTGCTCTGTGTGCTGCTCTACTACTGCAGACGGAAATGTCTAAAACCACGGCGACAACAGGGAAAGCCACACACTGCTCTGAACAGCTCCAAGCGCGACCAGGGCACCTCCACTTCCCGCCTCAACCTCATCTGTGGCGGCCACGTTGAATCCGGTCCATCCAATGATGCCAACAAATCTGACCCATCCCCCTCACGAGACTACCAGAGCTCGCGGGAGGAGTTCGCCAAGCACGTCCCCGCCCACAAGCTGCGGCATTCGAAGGCGAAAGGAGCCTCGGGACCCCAGAGGGGCGAGAGCTTCCCTATGAAGGTGACCCGCGCCACAGACACCAACAATCTCGACAACCCCCTGCTACTGCAAGAAGACTACTCACGGAACTACAGCCCCATCATGGAGGACGACAAGGACTCGGACTACCACATACGCTGCCACACCGCCAACGACAATCGTGGCTACACCTCAGATGGGGGCTCCCCACCTCGTTTCCTGTCGGACAAGTCAGACAAGCCTCCCGAGTACTCTGCGGCCGCCGCCGACCACCTGGCCCGCCCGACATCGCTCAACACGCAACCGGGCCAGATCATCTTCTGCCACTCCATGGACCAGATGAAGGAAAACATGTACCGAAGCATGGTGCCCACCTTGGTCATACCGGCCCATTACATGCGTATGTCCTCAGATTTCTCCGGGAAGGAGCAGCAGCAGGATAAGGAAGGGGGGATGCAGATGGGTGCCGGTCAGTCACACCATCCCCAGCAACAGAgccagcaccagcagcaccagcagcaggGCGGCTCCCAAGGGGATGACTCGGAGGGTCAAAACTGGAACTCGGACCCATCCCAAGGCCCTGTGCGGATCCCTGTGCTCTTTAACGACTCCACCATGGCACAGATGAATGGCGAGCTGCAGGGGCTGACTGAGAAGAAGCTCCTGGAGCTGGGCATTAAGCAGCACCCACGCGCCTGGTTCATCTCAATGGACGGCCGCGCCAACCACGTGCGCCATTCTTACATCGACGTGAGCAACGACCTCAGCAGCGGCGGAATTGGCGGGGGAGGCGGTGGCCCCAGCTGCAGCACAATCCGAGAAGCCAACCTCGAAGGACCCATGGACGGCACCCAAGACCGCAAGGCTGCGGCAATCCGTAAGGGTAAGGACGAACGGTGGGGAACTGGTGGACGGAAGGGTGGTGGTAGTAAGGGCATGTCCAAGCTGGCATACCAGGAGCACAGCGAGCCCAGCAGCAGCGAGGGCCGCCCAGTGTCGCCCGAGGAGAATTCCCTTACCCCGCTGCTGGACGAGGGGCCCTCGTCGCGGGGCTCCACCGTCCCCCGGAGAGGCCGCAGCCGCATGAACAGCGCGCGCAGCAGCAACAGCGAGAACCGTCGCGACTCCATGACTAGCCCAGAGGACGACCCGGACAGCAAGGATGAGAACAAGAAGAGCCCGTGGCAGAAGATCGAAGACCGGCCTCTCATGGTGTTTCCCCCTAAAAAGTTGTAGGCTAACATCTCAGGCTCCACTCATATGGAACGTAAGAGTTGGTCCAGTAGTCAGGGCAGTTCTACAGCCATTTTGAGACACCTAGAGAAACAATAAAAGGAAGGTGGAGGAGTAGCATTTGACCGAAAGAAGATCCTAGAAAAGCACAAGCCTGCTTGATAATCCGTCAAATGGTACTATTTTAATGGCAGCCTCTTTCTATGGTTTTTGTGTTTCACATTTATTCGATCGCACCCCTAATTCCCATCATTCTTCTCCATGTCTTTACAAATCCATTTTTTAAATCCCTCTCAGTAAATTAGACTCTGAGCCACTGACTTTGGAAATAACCATCTTAACGAAGAAAACCCAAATGGCTATATTTGGAGAGAACTAACCTACAGTATCTTGTTGCGACTGAAATAATTTGCCCAGTATTGTGAATGGACTTCTACATGAGAAAGACAAGTTACTTCAAGGACAGGACTACCCTCTTCTCTCCTGGACTTGTGTACTACACATTTATGAAGGccagggtcaattccatttcagttCAGTCATTTCAGGAAGCAAACCGAAATGTGTAATTTCCGTTTGCGCCAGGAATTGGCTGAATTAAAATGGTACCAAAACTCTGATATAGGCCCACCTTGAGTTTTAGTGGTTGTAATTCTGTCACTTTGGTCTGCCTGCTTCCTGGACCATAAGGAGATACTGTATCTCTGTGAAGACATTAGCACACATTATCCCAAAGCATAAATGTGTGGAGATTATGTGGTTTCTTTCTTTATGGTTTTCTATTTGGAGGATTTTTATGGAATGATAGTTAGTGTAAAATATCTGTTGATCTCCATTTGTCGTGTGTACAATTATGTACTTTTAATGTGAAATGTGCATTACTCCTTCAGGGAAATGTATTTGCAATTCTTTATGTGTTGTAATGAtttactataatactgtaagccACTTATCTGAGGTGGGATCTCCTACAATTTTGCACAGATTTGCCATCCTGGTACATGCCACCGGCCATTTTATATTCCACGGGTTTTATTTAGAattttttctgtttttgtgtttggaatACCACGGTTGCTATGGGAGATCATGCTGTCTCAATGCATATGATGTAAGCATTTGTAGGCCAATTTCGAAACTGTAGAATAACTGCATTACCTATAATGCTCTACTCAACCATCAAAAATCTTCTCCATCCATTGGACAACCCCTCTCTTACAATCACCACCGACCTCTGTGACAGTTTTCTGGCCTTCAGGCTATCTACCAACAGCTGCAGTAGTCtcacctcacccccccccccccagtgttaCATTTGAACCCCACATCCCTAACATCACCAagtcagccttttcccacctcAAAAACATCTCATGACTTAGACCCTCTCTCACTGACACCACAACCCTCATCCATGCCTTTGTTTTATCATGCTGGCCTATTGCAACGCCATTCTCTACGGACTCCCCAACAAAACACTGGGCAAACTTCAAAATTCAGCTGCACGGGTACTCCCACACACCAGATCTTGGGACCACATCACCCCCAACCCTCATCAACCTCCACTGGCTCCCAGTTCAATACAGGATCATATTGCTCATGCTCACCTGCAAAGCACTCAATGGACTGGCGCCAACATACCTTACTGACGTCCTGCACCTCTACACTCCCACCTATTCACAGCGCCCCGCTCCATGGGAGACTGGGTTTTTAGCTGTGCAGCTCCTCAAGTCTGGATCTTCCTCACTCTCCATGTCAGAACCGGACAATCCATACACATATTCAAGTCCACACTAAATAGACACCTCTTCACACAGGCTTACCCGGATTATCGGCTGCTTTAGCTTTTATCCTCTGTCTAGTTCACTTCCCTGGTTAATCTGTCATcgtgtttagtgttctccatggttagtctgtccttACATTTAGTGTACTTTTATATACTTAATTATTTTATGATGTGATTTTAATGCTTTTTATCCTGCTGATTCTCGTGTGTATGTAAAGTGACTTTGGGTGTTGTGAAAAGTGCTtcaaataacatttatttttgttattattatAATGCCCATTGACTGAACATTCCAAATGACTATGGCAATTATGCATCACAATGCTACAATGGCAATTATGCGTCacaatataaattatatttatatTGTGTAGGGCAGGCCAGTAACTTTTGCAACCAAATCATTGTATTGTACCCCAAAAAATAGGAGAGGGGAATTCCACTTTCACATATATTTTCTAGTTTTTATTTAGACAGATTCAATTGCAAGGGGATACAGAGGTAACGAGGGGAAAAGTCGGAAGGGTCAACTCGGGGATTAAACCCGGGTCTCTGGCGGGGAGTCGCATATAATATGTCACACAAAGATTGCATTTTTTTCGTGAGCAATTGACAGTGAGCAAAATAACCATAACATTTTAAATAAACGGGAAGGTGCAAATAGCTTATTAGCAGCATGAATTTCTGCTCTGTAGGTGGGGTTATTGAGTGAACAATCATGTGATGGGTGCAGTCCACAAAGATAAAATTGCAATGAATCAAATGAATCAGATCTATTGATTTACCGCCTGTAGGGGAGGCGGTGCCACTGGTGTATTGTATATAGCTATCAAAGATGACGATAACAATTTGAAATGTCGGTCATGATGCACAACCTTTCTTTTACTTCCAGGGTCTTCATTCATTTGTGTAGTATTGATACACTTTGCCCAAATTTGAGACATTTCTGCTTTTCTCCTGTGCCATTTGGTTATTTGCTTGCTGTAAATAATATTTAGCTTTGAGAGTCTACCTTTTGGTTGAAGGTTGCATGTATGAAATAAGCATAAGGCaccaaaaaaaaaggccatgcaAATCTGTACCACTTTTCTCCTGTAAGTGCCTTTTTACATAGGGTTAAGTGACTGGCATGGAGGGCCTTTTCAAAATGCAGTCCAAGAAGGTTTTACATCACCTAAGCTAATCTTGTCAAATGGACAGACACAAAAATGGAAGCACACTGCATTTAGTTAAGAACACACATATCTTCCCCGGGGGAGAGCATGCATGCCAAAATTTATCAATGACTCATTTTGTGTTCAATATGTCCTTGTGTTCATAGTTTCTTGTGTCTATCATTTCTCAACAAACGTGGTAGACTAAGTGATTGCTATTTATTGTACAAGTTTGATAACTGACAAATTCAGAGAACTATATaagattgtgtgtgtatatgtactgtatgtgcatgtAATATGTAGAGTAGAGTGTTTTTAATGGAAAGTCTTTTTTGATAATATCCAGAATGTTGCTGGCACACATGAAGTATATCAAATTCTGTTGCCAAATGTACACACATTTTAGATGAATTTCGCTCTACTCTTAAAATTCACTTCCGGTCTTAAATGTTTACAAGTACAACATACTGGCCAATATGCTCTCACTGTAGATTGCATCACAATTGCCTATGACACTTAACAACTGTGAATCATATTTCTTACAGATGTAAATGAAGAAATGCATagctacagtacaacacagtcacaAAGAGTTGGTGCAGTAGATCTGTAAATGGATGTAATACCATTGAGAGAGATTGTAAAAAATAGACAAAAAAGTTATGAAAAATGCAACAATGCGAGGGTAAAACATTATTATGTTgcagtacattttttttctctctctgtttataaaTGGGGAGGACTTTGTTCCGTTTATATTGACAGTAGACTTTTATGAATTTCTTGTTTTTGCTATTTTCAAAGTCGTTCAGAATAATGTTCACTTAAATGTATAGTATGGCTACCCTGACTCTGGATGAAAAATTGTATAGCCCTATTCTAATGGATTCCCAGGTCTATTCTTGCCAAATTATGTCATTTTTTTTTCGTACAAGCTGTCTATAACCTTTTCCAATGCAGTAAGACAATTGTGATGTCGTGTTTGGTTGGTTACAAGAGGCAAAATAAATGTTCAGAATCTCCCTACCTACTACTAGGCCGGATATGACAGCATCTTGATATTAGTGCAATTGTGGATTTGTTTAGTTTGATACCAGACCTTGAATTGAGCAAAATTACAAAAATAGATGCATTCAAGTTTTTCCCAAAGTATTTTTAAAAGTTTTGTGATATCACAATATTACAAAATCAAAAAACAAAACGTACCTGTACACAAGTCTGAGTAATGTCCTGCAAATCTTACTTGTGGTTGTGAATTCAATAAATGTATGTTGGGGTCACCTAATTTCCATCCAATACCCTGATTGCACAAAAACACATTATTGTCACTATTGTGTATAAAGAGCAGCTGTATATTAAAAACATCTTTGGGAGTGGAAGAGGAGACAACACGTTGTATATTATTCtgtgtgagaaaaaaaaacagtcagTTTGTAAACTGTAAATCGATTCTGTACATGAGATAAGATAGAAATAAACTTGTTTGCACTGTCTAACAATTA

Function

NR:

description
protein FAM171A2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565388.2 True 7111 mRNA 0.46 8 25165386 25191533

Neighbor

gene id symbol gene type direction distance location
mapta NA coding upstream 72401 25045692 ~ 25092985 (+)
trnaa-ugc-127 NA coding upstream 133987 25031329 ~ 25031399 (+)
ifn5 cd79b coding upstream 272715 24889101 ~ 24897741 (+)
ccr10 LOC106579362 coding upstream 304256 24857512 ~ 24861130 (+)
LOC110491705 ud2a2 coding upstream 336068 24826163 ~ 24829318 (+)
zdhhc6 zdhhc6 coding downstream 10888 25202421 ~ 25213711 (+)
gucy2g LOC106579347 coding downstream 138881 25330414 ~ 25367122 (+)
plxdc1 LOC106579118 coding downstream 242577 25434110 ~ 25527003 (+)
LOC110491720 lasp1 coding downstream 365734 25557267 ~ 25592916 (+)
arhgap23b LOC106579110 coding downstream 439678 25631211 ~ 25702729 (+)
G1355527 NA non-coding upstream 7338 25157227 ~ 25158048 (+)
G1355526 NA non-coding upstream 8561 25156589 ~ 25156825 (+)
G1355503 NA non-coding upstream 45688 25119276 ~ 25119698 (+)
G1355500 NA non-coding upstream 48565 25116590 ~ 25116821 (+)
G1355498 NA non-coding upstream 50594 25114185 ~ 25114792 (+)
G1355552 acsl5 non-coding downstream 25257 25216790 ~ 25226546 (+)
G1355575 NA non-coding downstream 69700 25261233 ~ 25261451 (+)
G1356094 NA non-coding downstream 99172 25290705 ~ 25290936 (+)
G1356111 NA non-coding downstream 112735 25304268 ~ 25304525 (+)
G1356272 NA non-coding downstream 412712 25604245 ~ 25604577 (+)
dcakd dcakd other upstream 381874 24764607 ~ 24783513 (+)
G1355273 NA other upstream 481467 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 484271 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1075352 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1170365 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 885008 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 1113418 26283071 ~ 26314809 (+)
G1358292 NA other downstream 2137778 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2369614 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2711517 27902972 ~ 27986259 (+)

Expression


Co-expression Network