plxdc1 (LOC106579118)


Basic Information

Item Value
gene id plxdc1
gene name LOC106579118
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25434110 ~ 25527003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565397.2
GTCACTGCTCCATAGCAAGTGTTGAGTGAAGCTTATTTTTATGTTTTGGTGTATTTTAAACATGACTGATTATTTGAGAGACTGGATCAACACACGTTCCTGTCGCACAGTTCTACTGTTTGACTAGTTCGTTTTTGTTTTGACGGATGTCCACAGGAGGGTGCCACGTGCCTGGCAGCTTCTGTggaagaaatatataaatatttctaTGTAGGGTAGTCTCAGCCCTGTGTCTAAATCAGAGCAGTgctcaggagagggagagaaagagagagacgcgGGGAGtgagaaaaaggagggagggtggCCGAAAACTAAGAGAGGAGAGCTAGAGACGGGGAAAGGAGCAGAAAACCTGCAACACCTCATCAGCTGTTTGTACTGTTTGTCAACTCTTCTTTTACCATGGCTACAACATCCCAGGACTTAGACTAAGGAGGAAACAAAGACacgagtgtgagagagaaagagagaggagtgagaaaaagaaaaaagcaagaaccaaaaaaaaaaaaggaagaagagtgagagtgaaaggagagagaggaaaggtgggcgAGAGGAGGAGTAGGCACCCTTTCCTTGAAGAAGTAAGCGTGcaaggggaaaaggagagaggaggaaggagggagcgCACTCTACTGTGTGGACATGGGGTTGTGTGCTGTTCTGTTGATCTGTCTATCCCAGGCACAGTTTGGGAGAATTTGGGCGCAGGAGCGAACAGATAATACGTCACTGCGGATAGATGGGGGCTCGCCTGAGATGGGCAGGATCTACCAAGACCAGCAGCCCTCCATCAAACATGGTCAGAACCGAGCGGTACGCAACGCACTGGGGGGAGGACTGGACATTGATACCCTGCCCGACAACATGACCCATGTGGTGGAGGACTCTCAGAGGTACTACAGGTGGAGGAGTTACGGGCCAGGAGACAGACGGATGGAGGAACTCTGGGTAGACCTAAATGCTGTGCAACAGAGCAAAGTCAGAGTGCACGGCATCCTGTCCAACACACACCGGCAGGCAGCGCGTGTGGCTCTCTCCTTTGACTTCCCCTTCTATGGACACTACCTGAGACAAATCACCATAGCAACAGGAGGGTTCATCTTCACGGGGGAGATCACGCATCGCATGCTGACAGCCACACAGTACATCGCCCCCCTCATGGCCAACTTTGACCCCAGTTTTTCAAAAAACTCAACAGTGCGGTACATGGACAATGGTGAGGTGTTTGTGGTGCAATGGGACAAGGTGCGGCTTCAGGGGCGCGAGGCAGAGGGAACCTTCACCTTCCAGGCTGCTCTCCATAACAATGGAACAATTGCGTTCAACTACAGAGAGGTTCCTTTGCCAGTAGAGAAGATCAACTCCACTGAACACCCAGTGAAGGTGGGCCTGTCTGATGCGTTCAtggccctcctcccctctccacagtcCTCAGATGCAAGACGGCGGACCATCTATGAGTACCATAGAGTAGAGATTGACACCACTAAGATCAACAATCACTCTGCCTTTGAATTCACACCATTGCCCACATGTCTCCAACACACCACCTGTGAACTCTGTCTCATATCCAACCTGACAAATGGCTGTGGTTGGTGCAACACACTGCaaagATGCTCCGATGGAATTGATCGTCACAGACAGGAGTGGCTCGACTACAACTGTCCTGAAGAGGCAAAAGAGGCCACTTGTGAGGACTACACTCAGGGTGGCCCTGAGGGTTCCATGGGGTCCTTCAACCACTCAGCCCCAGAGCCCACGTCCTCCCCTGCAGTGCTCTCAGAAATCCCCGTCACCGAGGATGACACCAAACTTTTCATTCGCTACAATGGTGGTGACTTGCAAACGGGTCCTCCGCACCAGGAACGGACAGAGCACACTGCGATTATTGCAGGTGTGGTGGCAGCCCTCATTCTGCTGGTAGCCTTGACCCTTTTGGCTGTCTACTATATCAACACACACCCCACTGTTGCTCCTCCATTCTACCTCATGCAGCGACACACCAATAACTACTGGCCATCTATGAAGTTCCACAACCAGAGCTGTCACTCCACCTATGCTGAGGTGGAGCTTGGGGGTCACGATAAGGAGGGCTTCATTGAGGCCGAACAGTGCTGCTAACTAGGCTGGACTTCCGGGGCAACGTTGGACAAGAGAGTGAGCGCCATTTTGGGGATTAAAAAAGGAACTAAAGGGGACAGAAATGCAAAACGTCCCTTATTCGTACTATGGTGGACAATGTGTAACTGCTTGTAGAGAACAGTACTTTGTCTGTTttgtctgtgtctctcgctcttcGCCTGTCCAACATGCAGCAGCTGTCTATGGCCCTGTTCGAATACTCTAATAATACattcttcctccttcccttccttgAGGTAAGCACAAATCTAATGTTATTTGATAGGTGAGCAAGAAGTCCACTACATTGATTTCACCAATCGTATCATATCAGATCAGCGATAACTTCAAGGAAGGAGggcctacagtgccttcggaaagtattcagacactttggctttttccacattttgttacgttacagcctgactctaaaaatggatttaattgttttttccctcatcaatctacacaaagcataaacattttttttgtatggTTTCTAATTTATCAAAaataataaactgaaatatcacattgacataagtattcagaccctttactcagtacttagttgaggcacctttggcagcgattacagccgtgagtcttcttgggtattattCTACCATCCT
>XM_021565398.2
ACTGCTCCATAGCAAGTGTTGAGTGAAGCTTATTTTTATGTTTTGGTGTATTTTAAACATGACTGATTATTTGAGAGACTGGATCAACACACGTTCCTGTCGCACAGTTCTACTGTTTGACTAGTTCGTTTTTGTTTTGACGGATGTCCACAGGAGGGTGCCACGTGCCTGGCAGCTTCTGTggaagaaatatataaatatttctaTGTAGGGTAGTCTCAGCCCTGTGTCTAAATCAGAGCAGTgctcaggagagggagagaaagagagagacgcgGGGAGtgagaaaaaggagggagggtggCCGAAAACTAAGAGAGGAGAGCTAGAGACGGGGAAAGGAGCAGAAAACCTGCAACACCTCATCAGCTGTTTGTACTGTTTGTCAACTCTTCTTTTACCATGGCTACAACATCCCAGGACTTAGACTAAGGAGGAAACAAAGACacgagtgtgagagagaaagagagaggagtgagaaaaagaaaaaagcaagaaccaaaaaaaaaaaaggaagaagagtgagagtgaaaggagagagaggaaaggtgggcgAGAGGAGGAGTAGGCACCCTTTCCTTGAAGAAGTAAGCGTGcaaggggaaaaggagagaggaggaaggagggagcgCACTCTACTGTGTGGACATGGGGTTGTGTGCTGTTCTGTTGATCTGTCTATCCCAGGCACAGTTTGGGAGAATTTGGGCGCAGGAGCGAACAGATAATACGTCACTGCGGATAGATGGGGGCTCGCCTGAGATGGGCAGGATCTACCAAGACCAGCAGCCCTCCATCAAACATGGTCAGAACCGAGCGGTACGCAACGCACTGGGGGGAGGACTGGACATTGATACCCTGCCCGACAACATGACCCATGTGGTGGAGGACTCTCAGAGGTACTACAGGTGGAGGAGTTACGGGCCAGGAGACAGACGGATGGAGGAACTCTGGGTAGACCTAAATGCTGTGCAACAGAGCAAAGTCAGAGTGCACGGCATCCTGTCCAACACACACCGGCAGGCAGCGCGTGTGGCTCTCTCCTTTGACTTCCCCTTCTATGGACACTACCTGAGACAAATCACCATAGCAACAGGAGGGTTCATCTTCACGGGGGAGATCACGCATCGCATGCTGACAGCCACACAGTACATCGCCCCCCTCATGGCCAACTTTGACCCCAGTTTTTCAAAAAACTCAACAGTGCGGTACATGGACAATGGTGAGGTGTTTGTGGTGCAATGGGACAAGGTGCGGCTTCAGGGGCGCGAGGCAGAGGGAACCTTCACCTTCCAGGCTGCTCTCCATAACAATGGAACAATTGCGTTCAACTACAGAGAGGTTCCTTTGCCAGTAGAGAAGATCAACTCCACTGAACACCCAGTGAAGGTGGGCCTGTCTGATGCGTTCAtggccctcctcccctctccacagtcCTCAGATGCAAGACGGCGGACCATCTATGAGTACCATAGAGTAGAGATTGACACCACTAAGATCAACAATCACTCTGCCTTTGAATTCACACCATTGCCCACATGTCTCCAACACACCACCTGTGAACTCTGTCTCATATCCAACCTGACAAATGGCTGTGGTTGGTGCAACACACTGCaaagATGCTCCGATGGAATTGATCGTCACAGACAGGAGTGGCTCGACTACAACTGTCCTGAAGAGGCAAAAGAGGCCACTTGTGAGGACTACACTCAGGGTGGCCCTGAGGGTTCCATGGGGTCCTTCAACCACTCAGCCCCAGAGCCCACGTCCTCCCCTGCAGTGCTCTCAGAAATCCCCGTCACCGAGGACTTGCAAACGGGTCCTCCGCACCAGGAACGGACAGAGCACACTGCGATTATTGCAGGTGTGGTGGCAGCCCTCATTCTGCTGGTAGCCTTGACCCTTTTGGCTGTCTACTATATCAACACACACCCCACTGTTGCTCCTCCATTCTACCTCATGCAGCGACACACCAATAACTACTGGCCATCTATGAAGTTCCACAACCAGAGCTGTCACTCCACCTATGCTGAGGTGGAGCTTGGGGGTCACGATAAGGAGGGCTTCATTGAGGCCGAACAGTGCTGCTAACTAGGCTGGACTTCCGGGGCAACGTTGGACAAGAGAGTGAGCGCCATTTTGGGGATTAAAAAAGGAACTAAAGGGGACAGAAATGCAAAACGTCCCTTATTCGTACTATGGTGGACAATGTGTAACTGCTTGTAGAGAACAGTACTTTGTCTGTTttgtctgtgtctctcgctcttcGCCTGTCCAACATGCAGCAGCTGTCTATGGCCCTGTTCGAATACTCTAATAATACattcttcctccttcccttccttgAGGTAAGCACAAATCTAATGTTATTTGATAGGTGAGCAAGAAGTCCACTACATTGATTTCACCAATCGTATCATATCAGATCAGCGATAACTTCAAGGAAGGAGggcctacagtgccttcggaaagtattcagacactttggctttttccacattttgttacgttacagcctgactctaaaaatggatttaattgttttttccctcatcaatctacacaaagcataaacattttttttgtatggTTTCTAATTTATCAAAaataataaactgaaatatcacattgacataagtattcagaccctttactcagtacttagttgaggcacctttggcagcgattacagccgtgagtcttcttgggtattattCTACCATCCT

Function

NR:

description
plexin domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565397.2 False 2765 mRNA 0.49 14 25434110 25527003
XM_021565398.2 True 2726 mRNA 0.49 13 25434113 25527003

Neighbor

gene id symbol gene type direction distance location
gucy2g LOC106579347 coding upstream 66988 25330414 ~ 25367122 (+)
zdhhc6 zdhhc6 coding upstream 220399 25202421 ~ 25213711 (+)
LOC110491714 LOC106579122 coding upstream 242577 25165386 ~ 25191533 (+)
mapta NA coding upstream 341125 25045692 ~ 25092985 (+)
trnaa-ugc-127 NA coding upstream 402711 25031329 ~ 25031399 (+)
LOC110491720 lasp1 coding downstream 30264 25557267 ~ 25592916 (+)
arhgap23b LOC106579110 coding downstream 104208 25631211 ~ 25702729 (+)
plcd3b LOC106579107 coding downstream 191305 25718308 ~ 25765325 (+)
nmt1b LOC106579105 coding downstream 247667 25774670 ~ 25780246 (+)
svild LOC106579103 coding downstream 268970 25795973 ~ 25907006 (+)
G1356111 NA non-coding upstream 129585 25304268 ~ 25304525 (+)
G1356094 NA non-coding upstream 143174 25290705 ~ 25290936 (+)
G1355575 NA non-coding upstream 172659 25261233 ~ 25261451 (+)
G1355552 acsl5 non-coding upstream 207564 25216790 ~ 25226546 (+)
G1355527 NA non-coding upstream 276062 25157227 ~ 25158048 (+)
G1356272 NA non-coding downstream 77242 25604245 ~ 25604577 (+)
G1356395 NA non-coding downstream 256843 25783846 ~ 25784196 (+)
G1356665 LOC106611498 non-coding downstream 260710 25787713 ~ 25787971 (+)
G1356754 NA non-coding downstream 426889 25953892 ~ 25954148 (+)
G1356755 NA non-coding downstream 427832 25954835 ~ 25955064 (+)
dcakd dcakd other upstream 650598 24764607 ~ 24783513 (+)
G1355273 NA other upstream 750191 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 752995 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1344076 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1439089 23993618 ~ 23995021 (+)
znf281b LOC106578343 other downstream 549538 26076461 ~ 26107407 (+)
mpp3b LOC106579097 other downstream 777948 26283071 ~ 26314809 (+)
G1358292 NA other downstream 1802308 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 2034144 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2376047 27902972 ~ 27986259 (+)

Expression


Co-expression Network