LOC110491720 (lasp1)


Basic Information

Item Value
gene id LOC110491720
gene name lasp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25557267 ~ 25592916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946599.1
GTTCTACATCATTACAGCGGTACCGCCTTCCCTCTCCGCTCTCCGAAAATAAGCCTCTCCCTCTCGCCTCATGACCGAGTTTTCATTTAATCAATTTCGTGAACGCGCGCGCCTAGTAAGAATTGTGCGCTGTCAAAAAAACTGACTATTGGAATTTAGAATATCTGCCGATTTAGCTGACGCTATTTTGGATAGGTTCACTTCAATAGGTCTACACCAGAATATTAATTTCATTGCGTCCCGTTATTTCTGAAAGAGGATTTTCCCTTTCGCCATGAATCCGTTATGTGGAAGATGCAGTAAAATGGTTTACCCCACGGAAAAAGTGAATTGTCTAGACAAGTACTGGCATAAAGGATGTTTCAGCTGCGAGGTGTGCAAATTGACCCTTAACATGAAGAATTACCAAGGCTTCGACAAGAAACCCTACTGCAGTATGCACTACCCGAAGAGCTCCTTCACCTCCGTGATTGACACCCCAGAGAACCTGCGACTCAAACAGCAGAGCATGTTGAACAGCCAGGCGCTGTACAAAGAGGAGTTTGAGAAGAACAAGGGGAAAGGCTTCAGCGTGGTGGCCGACACACCGGAGATGCAGAGAGTGAAGAAAACGCAAGACCAGATCAGCAACaTAAAGTATCATGAGGAATTTGAGAAGAGCAGAATTAGTAGTGATGCCCCACCCCCAGTGAATGCCAGTCAAGATCCGCAGCCGCAGCCGCAGCCAGCCATCCCTCAGACCTACAGCTCCCAGCCGGATCCTGTGTCTGttccctctgctgctgctgtacCACCACCTAGTGGAGGGAAGCGCTACCGGGCTCTGTACAGCTACACGGCTGCCGACGCCGACGAGGTGTCTCTCCAGGAGGGCGACCTGATTGCAGACGTACAACAGATAGATGAGGGATGGATGTACGGCCGCATCGAACGCACCGGGCAACAGGGCATGCTACCTGCTAACTACGTCCAACCCCTCTGAAACCCTGGGCCTCCTTCAATTGGTTGAAACATTCAGAACACTGCAGACAGAAATGTAAGcatgggttgtgttcattaggcaccaaaggGAAGAAAATGGATTGAAAGAAGGTGTGACTGCCCGGacgtgtccaataagaaacgctcaATTTACTTTTTCATTGCAAAGCGTTTAAAACCCTTTGTTGCATGTCGTAATGAACAAAACCCAGGTTGAAGGTTAGTGTCCTCTCTAGGTTGTActtttctatctgcaacgttcagAGTTTCACTCCACTGCTGAACTTAGTCCAGGAGAAATGGGGAgatgaaaaggggggggggggggggtaaatgtgGGAAACAAGTCACAGcctaagagagggagaggacggaAGAAAGAGAAAAGGAAACAACTAGTGCCATTAAGACTTGAATATTGTCTCTGACCATGTTTTTGCTCATATGGTCTATTATTCATGGTTTTTGAAAAGTTAATTGATTTAGCTAATAAAGCTTCTCACTGCCATTTTCAGTACACAGTCCACTATCGGACAGCTCAATGCCCTAATACTACTACACCTAAATGGTTTTAAATGTCTAGGTCTTCCCCGTGGTTTATTTGTAATGACATAACGACCCCAGTGAGGCCATACCATATTAAGCTTGCATCTATTAGGCAGTGTACAATATATAGAGTTCCCCAAAATGTATTAATTATTCCGAAATTTTGCATGAAGTTGGAAAGTTTAGGATCGGCTTCCAGTTGACAGTTGTACATTTTAGGACAGATATATTTCTATAATTTAGAACCTAGAGGGCTTCCGTGTTAGTACTTGTTAGCAAACTGTATTTACTAACTAGTACCTGTTAGAATACCTACCGGTCTGTATCTACTGATTACAATAGTTACACTAATCAGCAGCACTTGGTTTGGGCTAGGCAGAAACAGGTGTGCACAATTATCAATcaatggtattttattaggatccccattagctgttgtgaaagcagcagctactcttcctggggtccacatcaAACATAAAATAGAACATTAATAAAACAAGAACAGAACTAATGATGTCCTAAAAGAGCCGTTTAAAATATCACCGCCGTGCATACGAAAAAATACTTAATTGGTGGTGTGatacggcttgacagaaatgaaGAATTCAAAAATGTCACCATTCACAGGGATTCAAGGGTGTTTTATACGTTTGAAAAATTAAAAAAGGTATGATTTATATTATTCTATTCTAAGTTTTGCAATGAAGCATTCAAATTCATTGGGGTAAAACTGAATATTTGAGAATTTGTCTCATTGTTTTTCTTACATACACAAAGCAGCCTATGTGCCAGAATGTCTCTGCTTCTGCTTTAGAAAGCAAACTTGACTTGAATGCAACAATGTCAAATCTAGCCAATCTTGCAAGCGTTCTTTGAAATCTTGTGCCAGCCAATGTGTAGCTGTCAAGAGGGACTACTTCAATAGCTGCATTTAGACagtcagcccaattctgatctttttttcactaattggccGTTCGattagaattgggctgcctgtctaatcACAGCCTATGTAGCTAGCATTGTTGAGGTACCCAGTCGAACCAAAGAGTACGCTTTGAATAGAGCACATCCAACAATATTTTAAGTCAGCAACATTTTATTAATCAACATTAAAAGAAAATACAACCTTA

Function

symbol description
lasp1 Predicted to enable actin filament binding activity. Predicted to act upstream of or within ion transport. Predicted to be located in cell cortex and cytoskeleton. Predicted to be active in focal adhesion. Orthologous to human LASP1 (LIM and SH3 protein 1).

NR:

description
LIM and SH3 domain protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946599.1 True 2666 mRNA 0.43 7 25557267 25592916

Neighbor

gene id symbol gene type direction distance location
plxdc1 LOC106579118 coding upstream 30264 25434110 ~ 25527003 (+)
gucy2g LOC106579347 coding upstream 190145 25330414 ~ 25367122 (+)
zdhhc6 zdhhc6 coding upstream 343556 25202421 ~ 25213711 (+)
LOC110491714 LOC106579122 coding upstream 365734 25165386 ~ 25191533 (+)
mapta NA coding upstream 464282 25045692 ~ 25092985 (+)
arhgap23b LOC106579110 coding downstream 38295 25631211 ~ 25702729 (+)
plcd3b LOC106579107 coding downstream 125392 25718308 ~ 25765325 (+)
nmt1b LOC106579105 coding downstream 181754 25774670 ~ 25780246 (+)
svild LOC106579103 coding downstream 203057 25795973 ~ 25907006 (+)
znf281b LOC106578343 coding downstream 483545 26076461 ~ 26107407 (+)
G1356111 NA non-coding upstream 252742 25304268 ~ 25304525 (+)
G1356094 NA non-coding upstream 266331 25290705 ~ 25290936 (+)
G1355575 NA non-coding upstream 295816 25261233 ~ 25261451 (+)
G1355552 acsl5 non-coding upstream 330721 25216790 ~ 25226546 (+)
G1355527 NA non-coding upstream 399219 25157227 ~ 25158048 (+)
G1356272 NA non-coding downstream 11329 25604245 ~ 25604577 (+)
G1356395 NA non-coding downstream 190930 25783846 ~ 25784196 (+)
G1356665 LOC106611498 non-coding downstream 194797 25787713 ~ 25787971 (+)
G1356754 NA non-coding downstream 360976 25953892 ~ 25954148 (+)
G1356755 NA non-coding downstream 361919 25954835 ~ 25955064 (+)
dcakd dcakd other upstream 773755 24764607 ~ 24783513 (+)
G1355273 NA other upstream 873348 24681414 ~ 24684055 (+)
LOC110491698 LOC106579132 other upstream 876152 24670341 ~ 24681115 (+)
G1354681 rpl19 other upstream 1467233 24085708 ~ 24090034 (+)
G1354668 NA other upstream 1562246 23993618 ~ 23995021 (+)
mpp3b LOC106579097 other downstream 712035 26283071 ~ 26314809 (+)
G1358292 NA other downstream 1736395 27329311 ~ 27332275 (+)
LOC110491768 LOC106579066 other downstream 1968231 27561141 ~ 27595350 (+)
LOC110491776 LOC106579398 other downstream 2310134 27902972 ~ 27986259 (+)

Expression


Co-expression Network