LOC110491735 (LOC106579096)


Basic Information

Item Value
gene id LOC110491735
gene name LOC106579096
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 26319980 ~ 26342601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565423.2
TCTTCAACATTTTGCCTGGCACAGCTTCTCAAAATAGTTATGGTATTTGCAAAAATGACAGAAGATCTTGCTTTTAGTATTATTACCTTCATTACAGTTTAGTGTTTGACTGTACTACACCCCCAGTACAGCAGGCGGCATTAGGCTCCAATTTTAATTGTAAAACATTTACTGAAGAAGAGATTTGTATTTCGGAAGTACGCTTTCGTCCACCGGAAGTTTAGAGTTTTAAGATGGCGCTGGACGGAATGGACCATCATATGGAGATGGAGGACAGTAAAGGTGGTTCTGGTCTCCGGCAATACTACCTGTCTAAAATAGAAGAGTTACAGTTGACAGTGAATGACAAAAGTCAGAATCTCAGACGTCTACAGGCTCAGAGGAATGAACTCAATGCAAAAGTGCGTCTCCTTCGTGAGGAGCTGCAGTTGCTACAGGAGCAAGGTTCATATGTTGGAGAGGTGGTGAGGGCCATGGACAAAAAGAAAGTGCTGGTCAAGGTCCATCCAGAGGGGAAATTTGTGGTGGATGTGGATAAGAACATTGACATCAATGATGTGACTCCAAATTGCCGTGTGGCGCTGCGCAACGACAGCTACACCCTGCACAAGATCCTGCCCAACAAGGTGGACCCGCTGGTCTCGCTCATGATGGTGGAGAAGGTACCTGACTCCACCTACGAGATGATTGGTGGCCTGGACAAGCAGATCAAGGAGATCAAGGAAGTGATCGAGCTGCCAGTCAAGCACCCAGAGCTCTTCGAGGCTCTCGGCATTGCACAGCCCAAGGGCGTGCTGCTGTACGGACCCCCAGGCACAGGGAAGACCCTGCTGGCCAGAGCCGTGGCCCACCACACCGACTGCACCTTTATCAGGGTTTCTGGCTCGGAGCTGGTGCAGAAGTTTATTGGGGAGGGTGCCCGCATGGTGCGCGAGCTGTTCGTCATGGCCCGTGAGCATGCGCCCTCTATCATCTTCATGGACGAGATTGACTCGATCGGCTCGTCACGTCTGGAGGGGGGCAGCGGGGGCGACAGCGAGGTGCAGAGGACCATGCTGGAGCTGCTGAACCAGCTGGATGGCTTCGAGGCCACCAAGAACATCAAAGTCATCATGGCCACCAACCGTATTGACATCCTGGACTCTGCCCTGCTCCGGCCCGGCCGCATCGACAGGAAAATAGAGTTCCCTCCTCCCAATGAAGAGGCTCGTTTGGACATCCTGAAGATCCACTCAAGGAAGATGAACCTGACGCGTGGTATTAACCTAAGGAAGATTGCAGAGCTGATGCCAGGAGCCTCCGGAGCTGAGGTTAAGGGTGTGTGCACAGAGTCCGGGATGTACGCcctcagggagaggagagtgcaCGTCAACCAGGAGGACTTTGAGATGGCTGTTGCCAAGGTGATGCAGAAGGACAGCGAGAAGAACATGTCCATTAAGAAACTCTGGAAGTAGAACTTTGGGGGGGATTTTTGGACCCCAACGCAGATATTTACCCGCAAAGTCACATATGTATATTTTTCTTCTTTTGTTTAGGGTTGGTTTATAATTGTTACCTAGTTCATTCTAAAAAATAAATTGTCTCCCCACTGAGAAA

Function

NR:

description
PREDICTED: 26S protease regulatory subunit 8

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0031531 thyrotropin-releasing hormone receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03066 PSMC5, RPT6; 26S proteasome regulatory subunit T6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565423.2 True 1599 mRNA 0.50 12 26319980 26342601
Loading

Neighbor

gene id symbol gene type direction distance location
kcnj19b LOC106579102 coding downstream 282005 26006287 ~ 26037975 (-)
LOC110491727 cssa19h17orf105 coding downstream 535755 25780195 ~ 25784225 (-)
acbd4 LOC106579108 coding downstream 601694 25702829 ~ 25718286 (-)
LOC110491722 NA coding downstream 627477 25687932 ~ 25692503 (-)
LOC110491723 NA coding downstream 664707 25647763 ~ 25655273 (-)
smarcd2 smarcd2 coding upstream 3097 26345698 ~ 26369499 (-)
LOC110491737 LOC106579095 coding upstream 27596 26370197 ~ 26381555 (-)
LOC110491739 LOC106579092 coding upstream 46498 26389099 ~ 26405378 (-)
slc4a1b LOC106579091 coding upstream 64608 26407209 ~ 26449026 (-)
LOC118939473 LOC106561172 coding upstream 122012 26464613 ~ 26465753 (-)
G1357461 NA non-coding downstream 941 26318173 ~ 26319039 (-)
G1357452 NA non-coding downstream 35911 26283053 ~ 26284069 (-)
G1357451 NA non-coding downstream 37239 26282441 ~ 26282741 (-)
G1357199 NA non-coding downstream 38797 26203836 ~ 26281183 (-)
G1357155 LOC100194703 non-coding downstream 155972 26144892 ~ 26164008 (-)
G1357596 NA non-coding upstream 217203 26559804 ~ 26565677 (-)
G1357617 NA non-coding upstream 258365 26600966 ~ 26601168 (-)
G1357631 NA non-coding upstream 276515 26619116 ~ 26619448 (-)
G1357632 NA non-coding upstream 277481 26620082 ~ 26620423 (-)
G1357635 NA non-coding upstream 281346 26623947 ~ 26624238 (-)
LOC110491708 LOC106561205 other downstream 1431336 24884866 ~ 24889077 (-)
LOC110492858 LOC106579369 other downstream 2285570 23995179 ~ 24034410 (-)
G1354433 LOC106581475 other downstream 2861433 23451825 ~ 23458547 (-)
G1354351 NA other downstream 3000588 23318569 ~ 23319392 (-)
G1353762 NA other downstream 3275219 23043249 ~ 23044761 (-)
G1357833 NA other upstream 384694 26727295 ~ 26727828 (-)
LOC110491745 LOC106609103 other upstream 386703 26729304 ~ 26744821 (-)
G1359119 NA other upstream 769182 27111783 ~ 27113401 (-)
G1359321 NA other upstream 1014683 27357284 ~ 27359562 (-)
G1359412 NA other upstream 1184562 27527163 ~ 27528137 (-)

Expression

LOC110491735(LOC106579096) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110491735(LOC106579096) Expression in each Bioproject

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LOC110491735(LOC106579096) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network