XLOC_032370


Basic Information

Item Value
gene id XLOC_032370
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52117036 ~ 52210053 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064981
gGAATGGATTATACAGACTGTAATGATAAGAACGAAACATCGCTTTTTCATTTTAAGTGACTCTTTTCCCACTCAAATTCAGTTTAATATGCAACTTGTGGTGTTTACTGATGTCCAAAATAACGTGACGTGAATATGAGACGCGCGAACGCGACAGGACGTCAGTTGCTTCAGTCATCGTCATTAGCCTGCTCTGTTCATGCTGTCCTCGATGGATTCATGGCTGGCCTGCCGGACTGTACGACTGGGCATCTCTACGGCGAGTCCTGTCTCTGTACTCCTTTGAATGCCCTTTAGTCTGCGGCCCTCTGGGTCTGAAGCGAAGAAGGAAAAACTTAAACCCCGCCGTCACTGTCAACTCCGC
>TCONS_00064983
gGAATGGATTATACAGACTGTAATGATAAGAACGAAACATCGCTTTTTCATTTTAAGTGACTCTTTTCCCACTCAAATTCAGTTTAATATGCAACTTGTGGTGTTTACTGATGTCCAAAATAACGTGACGTGAATATGAGACGCGCGAACGCGACAGGACGTCAGTTGCTTCAGTCATCGTCATTAGCCTGCTCTGTTCATGCTGTCCTCGATGGATTCATGGCTGGCCTGCCGGACTGTACGACTGGGCATCTCTACGGCGAGTCCTGTCTCTGTACTCCTTTGAATGCCCTTTAGTCTGCGGCCCTCTGGGTCTGAAGCGAAGAAGGAAAACCAGCGGGACCCTGGGGAAGAGGCCGTCTCACGCTGATGACATCTTCAGTGCGAGACAACAATGAAACCTGACAGCTCCAGAGAGTTAAAGTGAACTCAAGTTTGTGTGAGAGTGAGGCAACATACGAGAGGAAGAGAAAGTGAAACCAGGGCAGGATTGTTCTCTCCGTCTAGAAACAAACAACATGTTCTTGCAACAGTTGACACTCCTTCTGTTCAAAGCCCATGGCAGAAACCCATTATCATACTGTGAAGACCATCATAAGCTGACACTTGCCTGGACGTCCATGTGGATATAGTGGCTTTTCCTGCGAGCGCACTCAGACACACTAACACACTATGGGATGAGAGACATAACCGCAGCTCGTCTTATTCTGAAAGCAACTTGTAAAAGTGGAGCTCAACTGGCATCCAGGTCAAGCTGATGTGTGCCAGAAAACACTTTCAAATCTGCAGACTCACTTTCAGCCACCAGCGTCTCGTCCAGAGCAGCAGCATAAGTGGGGGCCGTCAGTCACTGGAATATttattttgggggttgcgagCTGAAAAGTTGGGAACCCCATGGC
>TCONS_00064982
gGAATGGATTATACAGACTGTAATGATAAGAACGAAACATCGCTTTTTCATTTTAAGTGACTCTTTTCCCACTCAAATTCAGTTTAATATGCAACTTGTGGTGTTTACTGATGTCCAAAATAACGTGACGTGAATATGAGACGCGCGAACGCGACAGGACGTCAGTTGCTTCAGTCATCGTCATTAGCCTGCTCTGTTCATGCTGTCCTCGATGGATTCATGGCTGGCCTGCCGGACTGTACGACTGGGCATCTCTACGGCGAGTCCTGTCTCTGTACTCCTTTGAATGCCCTTTAGTCTGCGGCCCTCTGGGTCTGAAGCGAAGAAGGAAAAaactgttctttgccagacttgaaCCTCATCATCTTGGTCAACTCCACTCCACCTCTCAAGTTCTTCGACATACACGGCGAGCCagtgggcaaactggtaacaccgaaaaagccatccatatggagCTCGTCTTATTCTGAAAGCAACTTGTAAAAGTGGAGCTCAACTGGCATCCAGGTCAAGCTGATGTGTGCCAGAAAACACTTTCAAATCTGCAGACTCACTTTCAGCCACCAGCGTCTCGTCCAGAGCAGCAGCATAAGTGGGGGCCGTCAGTCACTGGAATATttattttgggggttgcgagCTGAAAAGTTGGGAACCCCATGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064981 False 364 lncRNA 0.48 3 52117036 52134575
TCONS_00064983 False 902 lncRNA 0.48 6 52117036 52210053
TCONS_00064982 True 664 lncRNA 0.48 5 52117036 52210053

Neighbor

gene id symbol gene type direction distance location
XLOC_032369 abraa coding upstream 44207 52064304 ~ 52072829 (+)
XLOC_032368 angpt4 coding upstream 86219 51932267 ~ 52030817 (+)
XLOC_032367 NA coding upstream 250776 51852073 ~ 51866260 (+)
XLOC_032366 rspo4 coding upstream 273759 51824596 ~ 51843277 (+)
XLOC_032365 tmem74b coding upstream 336279 51773873 ~ 51780757 (+)
XLOC_032371 ywhaba coding downstream 2521 52212574 ~ 52225289 (+)
XLOC_032372 cox6c coding downstream 25388 52235441 ~ 52241529 (+)
XLOC_032373 zc3h10 coding downstream 32086 52242139 ~ 52256744 (+)
XLOC_032374 esyt1b coding downstream 53183 52263236 ~ 52336619 (+)
XLOC_032375 AL929108.1 coding downstream 94378 52304431 ~ 52304621 (+)
XLOC_032363 CR548633.1 non-coding upstream 1041865 51075056 ~ 51075171 (+)
XLOC_032361 NA non-coding upstream 1125023 50790189 ~ 50992013 (+)
XLOC_032362 NA non-coding upstream 1284690 50825233 ~ 50832346 (+)
XLOC_032360 NA non-coding upstream 1544025 50568897 ~ 50573011 (+)
XLOC_032377 NA non-coding downstream 249499 52459552 ~ 52467126 (+)
XLOC_032378 NA non-coding downstream 257955 52468008 ~ 52484569 (+)
XLOC_032379 AL954861.1 non-coding downstream 508920 52718973 ~ 52719714 (+)
XLOC_032403 CABZ01061079.1 non-coding downstream 1459458 53669511 ~ 53669630 (+)

Expression

Expression of XLOC_032370 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network