patl2 (patl2)


Basic Information

Item Value
gene id patl2
gene name patl2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27382279 ~ 27398868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565475.2
GACCATACAAAGCTGTCTAAAAAGATAAAGGTAGCAGAAAGGTAAACCGACGAATAGAAGTGTAATATTTTCAGAAACTATTCAAATGAGTGACTCAGAACAACCAGAGACTGAAACCGCAGTCTCTCAACCTCAGTGGCCAGAGAACGGAGGCCAATGGAGCGATGAAGAAGGGGGGGCAGGCATGGACGAGTGTGGATTGGCAGAGATggcagaggaggatgaggaaataGATATCTACAACAATGAGACGTTTGGAATGgATATGGATACAGAAGTCGGGGACACGGAAGGGGATCCCACTAACCCTCTGTTCCAATTTGGAGAGAAGCCACCTGCCCCACCTGCCTTGCCATCCCTCTCCCCTAgctccccccccttctctcccaggGCCCGGCCACAACTCCGGGTCCAGGGCCCTCCGGTCCGacgaggaaggggacagaggggagGTCAGGCCATGGCGCAGATGTTTGAAGACCCAGCTGTGGTGAGGACTGTGGAGGGGCGACCAAGTTTGCAGAGCTTAGACAGCGCTATAGTGGACGTTGGGAGCGTCTCCTACTGGGATGATCTAGATCCAGATGCTTGGATGTTATCATCTTATGAGAGAACCAGACACGCCTCTGGATCAGTATTGCAGGACCCGGCCATTGTGTGTGTGATGGACAGTCATGCCCCTGGCAGAGGACCGAACTACCTGGACTCTCACTACCCGTTCTCCAACTcaagtgggaggagagggggccTAAGAGGGTCATACTCAAGTAGACCATTTGGGCAAAGATGCCCATCTCAGATTAATACCATGTTGCCCAGCTCTCCCATCGTCTCCCGGCGACCTTTCACCACACAACAGCCATATAACCAGGTGGGGGGCTTCCTCTCGCCCTCGCCACGTCCCTGCCCCTCCACCCCTCAACCTTTAACTCCGAAAATGATGCAGCTTCGCTTTGGTGCAAACTCCCCAAGACCCTCTCCCTTCTACAGCCCCTCGTCAAATCGTGTGCAGCGATTCAGGTTCCCTGATCCAGTGACACAGCTTCACCCCCAACACAGACGATTGTTGAGTCAAAGGCAACAGAGATCCCAAAGAAAACCAGACAGCTGGGACCCCTACTGTAACCTCATGTCGGCTAAAGAGAAAGAGTGGATCATTAGACTACAGATGATTCAGCTTCAGAGCGAGAATCCCCACCTGGACGACTACTACTACCAGGAGTACTATCGGCGAATGGAGGCCAAGCTGGCAGAGGAGGAGTTGGGCATGCGGGGCAAGAGGGAGCCACCCAAACTCACCACCCCCTATGTCACCAAGATGGACTCTTACACCCCAGTGGTGCACATCGAGGGTTCCCTAGGCCAGGTCGCCGTGTCGACATGTTTCTCTCCTCGACGAGCGATCAATGCAGTTGCAGCCCACTGTCCACATGAGgaactaaaagacatcaggcaACAGCGATTGGATGTCCTAAAGAAAATAGAAAAGTTGTTCATGGTGCTGCTGGAGGTAGAAGAGGGGCAGAGGATGAAGGCACAGGTGCTGGGGGAGGGTGAGGAGAAGGGGCTGATGGAGAAAACTGAGATAAAAGTGGAGTACATCTACTCCCAGCTACAGCATCCTGACCTAGAGGCAGGGGAAGAATTTCTGCCATGTCTCCTGGTGTCCAAAGGAAAGCAGCTACTGGCTCGACTCATCCCCTTCCTTTCCCATGACGCCGCGTTGAAAGTCTTAAGCATGGTGACATCTCACCTGCCTGTACTCATGAGCAGAGACGCAGATGAgTCTCTTCCGGTTTTGTACCCGTCTCTTCGAATTGTGATCGGAGGCATGACCTTCAGTCAGCTTATTGGGGTCCTTAAAGACTTTACGGCATCACTTCCCGACTCCAGCGATGGCAGCGTGTGCCTCTCACTTGTCTGCCAAAGCAAGTTTGGGCTCTCCTTACTCTACGCTCTGCTGTCCCAAGGAGAGAGGCTACTGTCCTCTGATGTTCCTCTGGAGCCCAGCATTGGTGACTTTGAAACATGGACAGACACAGTCTTCTTGGTGGCTTCGCAGCTATCCCAGAGTGCTCTGGTGGAGCCCCTTCTCCTACCCTCAAACCTTCTCACACTCTTCTGCCGCTACCTGGACAAGCGTACTATCCACCAGCTGAAGAGCAATATGGAATCTGCGACTGGATACCTGGCTCTTCCGTCGTAGTAGGCAAGGACATCTGAAGCAGAGACTGTGTTTTGGCTAATGTACAGAATGTAATGAGCACCAAAATGAAAACGAGTGGGCATGCATACCCTGAGGTATTCCCTCTGCCTAGACGTACCACAgtatggctgcatttacacaaacagcccaattctgattttttttttttttttcaataattgcTCTTTTGAGTAATCAGATCAGCGCTGAAAAATAtttgatgtgaaaagatctgtgATTTTgtcaaagaccaattagtggaaaaaatatcagatttGGCCTACCTGAGTAAACGCAGCCTATGCTACCCATGCATTCTCCTTGTATGCAAAATGTGTTGTCTTAGAACACATGAATGCCATTCTTCTTATTCCTTCCTTTTTTTCTTCCCTCATTCCCTCACTTTTTTTGCACCTTTCCGTTGTCTCGATCTGTTTCCTTTATCTGCTCCTTTTTATTTCCTACTTTCCTCCTCTTAGTCTCCAGTCCAGCAACTCAGATTTGCTCTCTAGTCACAAATTCTCTTCATTTTTAACCTCTATAATCCAGTCCATAGTTTTAACTGCTACAGTACCATAGTACCACAATGTGGTGTAATGGACATAAGTTAGTCCTATGATGTAACACAGCCAGTAGATGGGGCTGAGCGATTGATACGTCAGCTCTCACTCTCCAGCTAACCTGCCTAATATTCAAGTCAAAATGAAAATATCAATCGATGTGTAATATCATTTCGGGAAGAGTAAGCTGTCATTTATCATTTTCATGATTTAAACGGTCTTCTCAAAAGAAATTGGTGTCTGAATCATGGAGGATTGTGCAGTTGCACTTTGTTAGTACGTGTGTAGGTTACATTTTGTCATAGAAAAATGTGTTTTCGTAAAATCAAATTGacttaaaaaaatatttggaaGTTTGGTTTCTTTCTAAAAGATAAATGTATATGGTTTTCCAAAATGTACCCTCTATGCATGTGCCATATGCTTTCTTCAATATTTATTTGAATATTTAAGTTGTAACTTGATCAAATTGAATCAGTTTAGTTGGAAACAGAATAATCACTCTTGTATAGCACTTGCAACATAAGAAATAAAATTCTTTAAAAATAA

Function

symbol description
patl2 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to human PATL2 (PAT1 homolog 2).

NR:

description
protein PAT1 homolog 2

GO: NA

KEGG:

id description
K24823 PATL2; protein PAT1 homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565475.2 True 3315 mRNA 0.47 19 27382279 27398868

Neighbor

gene id symbol gene type direction distance location
LOC110491760 tgfi1 coding upstream 259 27360553 ~ 27382020 (+)
LOC110491761 tceb2 coding upstream 22688 27332830 ~ 27359591 (+)
LOC110492891 NA coding upstream 283059 27098269 ~ 27099220 (+)
LOC110492862 kcnh6 coding upstream 336764 27018092 ~ 27045515 (+)
LOC110492861 LOC106579084 coding upstream 383924 26994629 ~ 26998355 (+)
cmn LOC106579069 coding downstream 32283 27431151 ~ 27500887 (+)
LOC110492863 paqr4 coding downstream 102463 27501331 ~ 27504634 (+)
LOC110491768 LOC106579066 coding downstream 162273 27561141 ~ 27595350 (+)
sult1st6 LOC106579067 coding downstream 196560 27595428 ~ 27646077 (+)
LOC110491774 LOC106579062 coding downstream 304515 27703383 ~ 27727796 (+)
G1358245 NA non-coding upstream 130107 27251269 ~ 27252172 (+)
G1358223 NA non-coding upstream 184033 27198031 ~ 27198246 (+)
G1358221 NA non-coding upstream 187608 27194464 ~ 27194671 (+)
G1358217 NA non-coding upstream 191561 27190482 ~ 27190718 (+)
G1358342 NA non-coding downstream 110750 27509618 ~ 27510435 (+)
G1358397 NA non-coding downstream 140692 27539560 ~ 27539829 (+)
G1358398 NA non-coding downstream 142831 27541699 ~ 27541936 (+)
G1358437 NA non-coding downstream 201647 27600515 ~ 27601054 (+)
G1358411 NA non-coding downstream 261861 27660729 ~ 27759730 (+)
G1358292 NA other upstream 50004 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1067478 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1292896 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2598767 24764607 ~ 24783513 (+)
G1355273 NA other upstream 2698360 24681414 ~ 24684055 (+)
LOC110491776 LOC106579398 other downstream 504182 27902972 ~ 27986259 (+)
G1358698 kif22 other downstream 647814 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2403786 29802654 ~ 29804368 (+)
G1361671 NA other downstream 2544573 29943441 ~ 29943756 (+)

Expression


Co-expression Network