LOC110491768 (LOC106579066)


Basic Information

Item Value
gene id LOC110491768
gene name LOC106579066
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27561141 ~ 27595350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565505.2
CCTCGATTCAAATGACTGTCTGGAGGAGAGGCGAGAGCTAGCGTTGAAAACATATGTTGGTGTTCAaatacaacataacacaacagtCAACCAGAAAAAAGAAACAAGGATTACTCAAAAAAAGATAAGATGTCTAACAATGCCACTGCAGCCTCCAGGAGAGGAGTCTTCCAAGCTCATGGTGATGGTGAAGAAGAGTCTAAACAACCCAGTCATAGCTATATGCTGAGTGACTTTGACTCAGACCCCAGCACAGACCCTGGATCTGAGACTGACCCTGACAGTGAAGAAGCAGAGAGTGAAGCAGAGTTAGACAGAGCACCAGACACACATAAAGAGAGTGCCACAACTGGTCTAGATCTCACTGAATTGAGAGATGTAGGTAAAGGCCCACAGACCAATGTCTATAAAGAAGAGGCGTACATAAGTACTACAcacacccagcctaaaaccaaaGGAGAGCTCCACATTCACTCTGTGTTGGAGTGTGGGAGTGAGGTGATGACGTGCCAGTTCAACAATGAAGGGACTCTGTTGGCTGTTGGTCTGAGTGACGGAGCCATCAAGCTCTACAGTATGGACAATGGGAATTTTTTACAGACACTAAGGGACAGCAGCAGCATTCTGTCCTCTCTACCAGTTACTGCACTACGATTCACTCTGAGCTCCCAGTCACGTTGTCTCCTGCTGGCTACCTATGCCAGCGGCATTGTGAGGAGCTGGTACGTGTGGGGAGGAGAGTGTTTGTGGGGGGTGAGAGACGTGGGGGAgactggaggtggagagggaggagttggacagagacagaccctctcgctctccgtctcCGCCTCTGGAGAGAAAGCAGCCACAGGGGGGTCCGACTCAGCCATTCATCTGTATGACCTCTCCACTCACCAGAGACTGATGACCTGCAAGGCCAGCTCCACAAGAACAGTTATGGATGGACATTGTTTTCGGGTCTTCGCAGTGACTTTTCacccagagatggagagagaattcATCTCTGGGGGTTGGGACAACACCATACAGTTTTGGGATACCAGACAGCAGCACTCTGTCAGGATGCTTTCGGGTCCTCACGTGTGTGGTGATACGCTTCAGATCGATCCAGCTGTCAACCACATCCTGTCTGGCTCCTGGAGGAGGGACAACGCACTGGAGatCTGGGATTATGTCTCAGGTCAGAAAGTGACTGAAGTGCCTAATGACTACCAAGGAGAGAGCAAAATCTacacatgccattggcttggccAGGATCATATCGTGGCAGCTGGCAGCCAATCAAATATGCTGAGAGTCATTAACAGGTGGACTATGACGACTGAGTCCAGGTTGCTGGGCCTCTCCTCGGCCGTGTTCGGCTCGTCCGTGTGTCTGGCGGGGAAGTGGACAGGCCTGATCGCAGCCACTTCTGGGACCAGTGTGTATCTGCTGGAGCGAGATGGTCAGCAGCATTCCAAAAAGTAGGGCCTCCAAGGAGAAATGATGTTACATTCAACGGCGCCGTTCGGTTGTCGGTCGCTGTGTGTTTAACGCACGCAGAACATTACGTTTTTGTTTACATGTCCTGAATGTAAAGATGTAAACTTGttttagtaaaaaaataaataataataattctaaaacattttttttttggtgcACACGGATTACTTAACTCAAATGTAACGCAAGAGGTACCAAATTATTTAATGTTGTATTCATATATTTGCTAACGCTCTTCAACATTCATATCCTGCATGGAAGCAACAGTATTTTGTTTTAGTCTCCCTCTAAACTTACTGTTGTTAATTCTGCTTTTATTACTTGATGTCGAGATGTTGAGTTACAGAACGTACACTCTTTTTATATATAAGACATTGAACTATGTCATGTGCGGGCGGATATATTTCAACAATGCAGTGTGAGTACGGACACATGAGAGCAGACTTTTGTGAAAAAATGTTGACTGCCAAAGTGCCTGAGGCCTGTTGCTCCAGTCATTGTCTCACAGGACTAGACAACTATAGGACTTAAGTCAAAAGTTAACTAACTTTAGGGAGTGTTTGCAAACTAGCAGGCTTCAACGTTTCATAAGAGGCCATCCAAGGGAactgtaaaatgtgtgtgtgagcaggagATTAGACAAAGAACAATGGAATTTTAAAGCAGCCATAATATAAAaagtgaatacttatctaattaaACTAATCTATGTCAATCAAATGTTCTTGTGCTGTCTTTTGTTTATTTCTTAATTAGACTATAGCAACCCGTTTTTACTTGGGAAGTAAATAGCCGAAGGAATATTTGGCTAGCTGCTCTGTTTGGAACAGATAGTTC
>XM_021565506.2
aaggtctactacacctgttgtgttcggcgcatgtgacaactaTAATTTATTTTAATCTACTCACTTTCGCTCGCCGATTCATGGACCGTCTATATCCGGGTTGCATCCGGTTTACAGCACCCAACTTCACACACACATTAGCACTCAGTGCGCACAGGGAGCAGCGTGAGCTGCAACATCATCACATCATCcaaaaacatggcaaacattaGATGAATATAAAATGTTAATATCTTCGACTGTGAGTGATGTTTGCACAAAGTGATAACCAAAGTGTCTTATTAGGAATTTTGAAATCTAACTTCTCTATGTTCAATACCGGAACCCTGGCACCTTGCTCGCTCATCGCAATGGTGTGTTCGAGCAGTAAGGATAGCGAAGCTGACTGTAGACATAAGTTGGCGAGGTGCATCTGTGGCAGCCGAAAGTCTGTCACTGTAGTCTAAagtggttttccaacagcaagactcagatcaacatggcagtgtCAACATAGCTGCCATTGTATGTCTAACAATGCCACTGCAGCCTCCAGGAGAGGAGTCTTCCAAGCTCATGGTGATGGTGAAGAAGAGTCTAAACAACCCAGTCATAGCTATATGCTGAGTGACTTTGACTCAGACCCCAGCACAGACCCTGGATCTGAGACTGACCCTGACAGTGAAGAAGCAGAGAGTGAAGCAGAGTTAGACAGAGCACCAGACACACATAAAGAGAGTGCCACAACTGGTCTAGATCTCACTGAATTGAGAGATGTAGGTAAAGGCCCACAGACCAATGTCTATAAAGAAGAGGCGTACATAAGTACTACAcacacccagcctaaaaccaaaGGAGAGCTCCACATTCACTCTGTGTTGGAGTGTGGGAGTGAGGTGATGACGTGCCAGTTCAACAATGAAGGGACTCTGTTGGCTGTTGGTCTGAGTGACGGAGCCATCAAGCTCTACAGTATGGACAATGGGAATTTTTTACAGACACTAAGGGACAGCAGCAGCATTCTGTCCTCTCTACCAGTTACTGCACTACGATTCACTCTGAGCTCCCAGTCACGTTGTCTCCTGCTGGCTACCTATGCCAGCGGCATTGTGAGGAGCTGGTACGTGTGGGGAGGAGAGTGTTTGTGGGGGGTGAGAGACGTGGGGGAgactggaggtggagagggaggagttggacagagacagaccctctcgctctccgtctcCGCCTCTGGAGAGAAAGCAGCCACAGGGGGGTCCGACTCAGCCATTCATCTGTATGACCTCTCCACTCACCAGAGACTGATGACCTGCAAGGCCAGCTCCACAAGAACAGTTATGGATGGACATTGTTTTCGGGTCTTCGCAGTGACTTTTCacccagagatggagagagaattcATCTCTGGGGGTTGGGACAACACCATACAGTTTTGGGATACCAGACAGCAGCACTCTGTCAGGATGCTTTCGGGTCCTCACGTGTGTGGTGATACGCTTCAGATCGATCCAGCTGTCAACCACATCCTGTCTGGCTCCTGGAGGAGGGACAACGCACTGGAGatCTGGGATTATGTCTCAGGTCAGAAAGTGACTGAAGTGCCTAATGACTACCAAGGAGAGAGCAAAATCTacacatgccattggcttggccAGGATCATATCGTGGCAGCTGGCAGCCAATCAAATATGCTGAGAGTCATTAACAGGTGGACTATGACGACTGAGTCCAGGTTGCTGGGCCTCTCCTCGGCCGTGTTCGGCTCGTCCGTGTGTCTGGCGGGGAAGTGGACAGGCCTGATCGCAGCCACTTCTGGGACCAGTGTGTATCTGCTGGAGCGAGATGGTCAGCAGCATTCCAAAAAGTAGGGCCTCCAAGGAGAAATGATGTTACATTCAACGGCGCCGTTCGGTTGTCGGTCGCTGTGTGTTTAACGCACGCAGAACATTACGTTTTTGTTTACATGTCCTGAATGTAAAGATGTAAACTTGttttagtaaaaaaataaataataataattctaaaacattttttttttggtgcACACGGATTACTTAACTCAAATGTAACGCAAGAGGTACCAAATTATTTAATGTTGTATTCATATATTTGCTAACGCTCTTCAACATTCATATCCTGCATGGAAGCAACAGTATTTTGTTTTAGTCTCCCTCTAAACTTACTGTTGTTAATTCTGCTTTTATTACTTGATGTCGAGATGTTGAGTTACAGAACGTACACTCTTTTTATATATAAGACATTGAACTATGTCATGTGCGGGCGGATATATTTCAACAATGCAGTGTGAGTACGGACACATGAGAGCAGACTTTTGTGAAAAAATGTTGACTGCCAAAGTGCCTGAGGCCTGTTGCTCCAGTCATTGTCTCACAGGACTAGACAACTATAGGACTTAAGTCAAAAGTTAACTAACTTTAGGGAGTGTTTGCAAACTAGCAGGCTTCAACGTTTCATAAGAGGCCATCCAAGGGAactgtaaaatgtgtgtgtgagcaggagATTAGACAAAGAACAATGGAATTTTAAAGCAGCCATAATATAAAaagtgaatacttatctaattaaACTAATCTATGTCAATCAAATGTTCTTGTGCTGTCTTTTGTTTATTTCTTAATTAGACTATAGCAACCCGTTTTTACTTGGGAAGTAAATAGCCGAAGGAATATTTGGCTAGCTGCTCTGTTTGGAACAGATAGTTC
>TU1552634
TTCAAATGACTGTCTGGAGGAGAGGCGAGAGCTAGCGTTGAAAACATATGTTGGTGTTCAaatacaacataacacaacagtCAACCAGAAAAAAGAAACAAGGATTACTCAAAAAAAGATAAGATGTCTAACAATGCCACTGCAGCCTCCAGGAGAGGAGTCTTCCAAGCTCATGGTGATGGTGAAGAAGAGTCTAAACAACCCAGTCATAGCTATATGCTGAGTGACTTTGACTCAGACCCCAGCACAGACCCTGGATCTGAGACTGACCCTGACAGTGAAGAAGCAGAGAGTGAAGCAGAGTTAGACAGAGCACCAGACACACATAAAGAGAGTGCCACAACTGGTCTAGATCTCACTGAATTGAGAGATGTAGGTAAAGGCCCACAGACCAATGTCTATAAAGAAGAGGCGTACATAAGTACTACAcacacccagcctaaaaccaaaGGAGAGCTCCACATTCACTCTGTGTTGGAGTGTGGGAGTGAGGTGATGACGTGCCAGTTCAACAATGAAGGGACTCTGTTGGCTGTTGGTCTGAGTGACGGAGCCATCAAGCTCTACAGTATGGACAATGGGAATTTTTTACAGACACTAAGGGACAGCAGCAGCATTCTGTCCTCTCTACCAGTTACTGCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565505.2 False 2325 mRNA 0.45 11 27561141 27595350
XM_021565506.2 False 2702 mRNA 0.46 11 27574530 27595350
TU1552634 True 643 TUCP 0.46 4 27561147 27577092

Neighbor

gene id symbol gene type direction distance location
LOC110492863 paqr4 coding upstream 56507 27501331 ~ 27504634 (+)
cmn LOC106579069 coding upstream 60254 27431151 ~ 27500887 (+)
patl2 patl2 coding upstream 162273 27382279 ~ 27398868 (+)
LOC110491760 tgfi1 coding upstream 179121 27360553 ~ 27382020 (+)
LOC110491761 tceb2 coding upstream 201550 27332830 ~ 27359591 (+)
sult1st6 LOC106579067 coding downstream 78 27595428 ~ 27646077 (+)
LOC110491774 LOC106579062 coding downstream 108033 27703383 ~ 27727796 (+)
LOC110491775 LOC106579060 coding downstream 180932 27776282 ~ 27823581 (+)
LOC110491776 LOC106579398 coding downstream 307622 27902972 ~ 27986259 (+)
pagr1 pagr1 coding downstream 453716 28049066 ~ 28081371 (+)
G1358398 NA non-coding upstream 19205 27541699 ~ 27541936 (+)
G1358397 NA non-coding upstream 21312 27539560 ~ 27539829 (+)
G1358342 NA non-coding upstream 50706 27509618 ~ 27510435 (+)
G1358245 NA non-coding upstream 308969 27251269 ~ 27252172 (+)
G1358437 NA non-coding downstream 5165 27600515 ~ 27601054 (+)
G1358411 NA non-coding downstream 65379 27660729 ~ 27759730 (+)
G1358412 LOC107387951 non-coding downstream 73499 27668849 ~ 27687905 (+)
G1358619 NA non-coding downstream 347026 27942376 ~ 27945256 (+)
G1358292 NA other upstream 228866 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1246340 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1471758 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2777629 24764607 ~ 24783513 (+)
G1355273 NA other upstream 2877222 24681414 ~ 24684055 (+)
G1358698 kif22 other downstream 451332 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2207304 29802654 ~ 29804368 (+)
G1361671 NA other downstream 2348091 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 3108297 30700999 ~ 30704172 (+)

Expression


Co-expression Network