LOC110491774 (LOC106579062)


Basic Information

Item Value
gene id LOC110491774
gene name LOC106579062
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27703383 ~ 27727796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565511.2
GAGGGATCGAACCATATCTCAATAGCAGCAGAAAAGGTCAAATAAGGGCACCAAAATGTCCGTTACGGGTATACACGACTGGCGGTACACAGTAGGCAGCTGATTGTTCGCGGACCTCCAAaataccatagaagaagaagaaacggATGTAAGCTAAGCGGTTTGAGCTTCCTTGGCAACGTGAGGCTTTTATAGCTACATTTTGTTAGCATGTCTTCAATAGTGTTGGATTTTCGTGCATAGATCACATGTGAGTAGTTTGTCTCGTTTCCTAGTTTATGCTAGCTATTGTTTTGCGGTGCTAGCAAACGTGATGCAGAAGTAGCTTTGCAACCTATTCAAGCCAAATCGcgttgctagctaacgttagctatgtttttatctagctaacgttagccatgtttttatctagctaacgttagccggtAGAGTTCACACCtgttagacaaaaatgtccacaTACCATTTGTATCGCGCAGTGCAGCTAGTTATTGTACTTTCTGCACGTGTGACCCATGCGGCCACAGATGGAGGAGTCAACACAGAGTCTTCAATAACAACGAACAGTCTAAAAACCTATGAGCCTTTCAGTACCACTGACCCGATGTATACCGTTTCAACTGTTGCATTGGATACTTTTGCAACTGCTTCTGCTGAAACTGTCACTCAAGATGGTGTTTCCACGGTAACCACGGACCTGGCTCCATCATCTGAAGCCACCACCGAGCCAGTCATTGAAACTGTCCCACCTCCTGTTGAAACTACTGCCAAAACAAGTCTGATTCCAAAAGTGTGTTTATGTGATTTGACCCCAGACTTCTGTGATATTGGCTGCTGCTGTGACATTGTGGACTGCGACATCCCTGACTTGAGCTCTGTCTTCAATGGATGTTTAGATGAAGTCATATATGGTGAATGCATTGAGAGCTGGTTGAtattcagagtcaatgtggatccTTCATGCGTCACTGTCACAAACAAATTTGTCTGCATTCGACCAGAAgaggATAATACTACAGTTTCCCAGATCCTTCCAGCTCTTGCTAATACACCATTGGACTCCTCCTACCACTTTTCTTGGAAGGGATCCGCAACTTATAGTACCCACACCAAAGATTTCTACAGGGTTGATGACACAATCATGTCCCATTTCAACAGCTCCTCCATTCGTGGGGTCCTTCGACAGCCTTCACCAGGGGCCGCCACGTCTTCCTGTGTCGACCGTAACCCTGCCAGGTTCCTGaggtctatttctctctcttgcaCCCGCACACTGACTCCCCTATCCTGTGCCACAGACCCCAGTCTCAATGCACAGTCCTACTTCCATGACATCAGCCTGTTCAAGATTCCAGTCCGTGAGAGTATTCAAATTTTACCAGATAATTTGATCCCAGTCACTCCAGTAGTCGGCCATGGTTGGCCTAAACCGAGAGAACAAAATGGTTCCTGTCTCAATGTGGTGTCAAAGGTGGACTATCTTATATGGTACACAATTATAGGGGAGATCGCTATGGCAACAGTAAACATGGTCTTGGTAGACACTGACTCAGATACGAATATTTTGCAGAAGCACACTGTCCGTTTCCAGTTATCCACGCCCCCTCCTACTCCTGAACCAACCCCTGTGGTGGGACTAACAATGGGGACTCCTGTGATTGGTCAGTTTGGCGACGCGGTCCAACCTCTAACTCTTCTGGGTGTGTCACTGGGGGGAGAGTGCTCTATTAACCCCAGCAGCCGCATGCCCATCCTTTTCACTCACAACACCATCACaggctgtaccttcagTTCTCCCTCGAGTAACTGCTCTAAGCTGCGCTCCCAGCTCTATAGAGTCCTCCGGGGGGTTGCCACACCCAACCTGGTTGCCATGACTGTGGGGTCACAACCAGACTGGGCAAGAGTCATCACACAGGCATGCTCTGTGACGCCACAGtCTCCGGAGGAGTCGTGTGAGTCCGggtgtctcctcccccactccctgTCAGTCCAGGTGCTGTGGGCTCAGACAGGTCTCCTGGCCTTTCCCCAGAACTACATTCTAGGGGCCAAATACCTCTTCCACTGTCAGAAGGTCAAGTGTCCCCTCGTCTCGCCTTTCGCTGTGACCACAGAAGTGATGTTTGTTGACACTACAGTCTACCCAGAACCCCCCAGGGGAACGCCACAGCCCAAGTGGAAATTTCCATTTGACTTCTTCTCCAGAGGGATAGGCGAGCTGGATGGACAGACTGTCACCACCAACAGTAGTGACCTCAAAAAGGTCACGTGGGATATAATGTTGGTTGCACTACTACTGTTGTGCTGGTTTCACTAAAATGTTTGTTACAGAACTAGAAATGTTCACTCGATAATCAATTTAGCTTGCATGTTGGATTTTTTTGTTACTGTTTGTGAGGCTGAATAGATGAAATTAGTGAAATTGGGCACAATTGCTTGGTTTGAAATCTCAGGTCATTTTAAATTAAACAGTGATGATTTCCTAAACTA

Function

NR:

description
tectonic-3

GO: NA

KEGG:

id description
K19382 TCTN1_3; tectonic-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565511.2 True 2493 mRNA 0.47 14 27703383 27727796

Neighbor

gene id symbol gene type direction distance location
sult1st6 LOC106579067 coding upstream 57306 27595428 ~ 27646077 (+)
LOC110491768 LOC106579066 coding upstream 108033 27561141 ~ 27595350 (+)
LOC110492863 paqr4 coding upstream 198749 27501331 ~ 27504634 (+)
cmn LOC106579069 coding upstream 202496 27431151 ~ 27500887 (+)
patl2 patl2 coding upstream 304515 27382279 ~ 27398868 (+)
LOC110491775 LOC106579060 coding downstream 48486 27776282 ~ 27823581 (+)
LOC110491776 LOC106579398 coding downstream 175176 27902972 ~ 27986259 (+)
pagr1 pagr1 coding downstream 321270 28049066 ~ 28081371 (+)
cabp5a LOC106579440 coding downstream 532487 28260283 ~ 28266022 (+)
nif3l1 nif3l1 coding downstream 550861 28278657 ~ 28287808 (+)
G1358412 LOC107387951 non-coding upstream 15478 27668849 ~ 27687905 (+)
G1358437 NA non-coding upstream 102329 27600515 ~ 27601054 (+)
G1358398 NA non-coding upstream 161447 27541699 ~ 27541936 (+)
G1358397 NA non-coding upstream 163554 27539560 ~ 27539829 (+)
G1358342 NA non-coding upstream 192948 27509618 ~ 27510435 (+)
G1358619 NA non-coding downstream 214580 27942376 ~ 27945256 (+)
G1358656 NA non-coding downstream 274513 28002309 ~ 28004524 (+)
G1358671 NA non-coding downstream 292588 28020384 ~ 28034898 (+)
G1358292 NA other upstream 371108 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1388582 26283071 ~ 26314809 (+)
znf281b LOC106578343 other upstream 1614000 26076461 ~ 26107407 (+)
dcakd dcakd other upstream 2919871 24764607 ~ 24783513 (+)
G1358698 kif22 other downstream 318886 28046682 ~ 28047390 (+)
G1361207 NA other downstream 2074858 29802654 ~ 29804368 (+)
G1361671 NA other downstream 2215645 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2975851 30700999 ~ 30704172 (+)

Expression


Co-expression Network