Gene
RNA
| Item | Value |
|---|---|
| gene id | mto1 |
| gene name | mto1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 27727803 ~ 27755447 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mto1 | Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in mitochondrial tRNA wobble uridine modification and tRNA methylation. Predicted to act upstream of or within tRNA processing. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 10. Orthologous to human MTO1 (mitochondrial tRNA translation optimization 1). |
| description |
|---|
| protein MTO1 homolog, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0002098 | tRNA wobble uridine modification | biological_process |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| id | description |
|---|---|
| K03495 | gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036946679.1 | False | 2145 | mRNA | 0.58 | 13 | 27727803 | 27755141 |
| XM_021565509.2 | False | 2332 | mRNA | 0.56 | 13 | 27727803 | 27755169 |
| XM_036946680.1 | True | 2144 | mRNA | 0.58 | 13 | 27727803 | 27755447 |
27,700,000
27,704,000
27,708,000
27,712,000
27,716,000
27,720,000
27,724,000
27,728,000
27,732,000
27,736,000
27,740,000
27,744,000
27,748,000
27,752,000
27,756,000
27,760,000
NC_048580.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118939521 | NA | coding | downstream | 35565 | 27690808 ~ 27692238 (-) |
| ppp1cab | LOC107387951 | coding | downstream | 39815 | 27668847 ~ 27687988 (-) |
| atp2a1l | LOC106579065 | coding | downstream | 66493 | 27646093 ~ 27661310 (-) |
| pelo | pelo | coding | downstream | 202357 | 27505305 ~ 27525446 (-) |
| LOC110491762 | NA | coding | downstream | 393232 | 27320852 ~ 27334571 (-) |
| adprh | LOC106579059 | coding | upstream | 70736 | 27826183 ~ 27842455 (-) |
| prrt2 | LOC106579403 | coding | upstream | 246856 | 28002303 ~ 28012976 (-) |
| kif22 | kif22 | coding | upstream | 257670 | 28013117 ~ 28048865 (-) |
| tlcd3bb | LOC106579402 | coding | upstream | 326464 | 28081911 ~ 28128839 (-) |
| maz | maz | coding | upstream | 409900 | 28165347 ~ 28176911 (-) |
| G1359406 | NA | non-coding | downstream | 226919 | 27500155 ~ 27500884 (-) |
| G1359378 | NA | non-coding | downstream | 275806 | 27451209 ~ 27451997 (-) |
| G1359274 | NA | non-coding | downstream | 386548 | 27339050 ~ 27341255 (-) |
| G1359276 | NA | non-coding | downstream | 391365 | 27334668 ~ 27336438 (-) |
| G1359243 | NA | non-coding | downstream | 529405 | 27198196 ~ 27198398 (-) |
| G1359717 | pagr1 | non-coding | upstream | 296098 | 28051545 ~ 28072528 (-) |
| G1359748 | NA | non-coding | upstream | 377950 | 28133397 ~ 28133627 (-) |
| G1359771 | NA | non-coding | upstream | 421510 | 28176957 ~ 28177207 (-) |
| G1359773 | NA | non-coding | upstream | 421825 | 28177272 ~ 28177556 (-) |
| G1359412 | NA | other | downstream | 199666 | 27527163 ~ 27528137 (-) |
| G1359321 | NA | other | downstream | 368241 | 27357284 ~ 27359562 (-) |
| G1359119 | NA | other | downstream | 614402 | 27111783 ~ 27113401 (-) |
| LOC110491745 | LOC106609103 | other | downstream | 984348 | 26729304 ~ 26744821 (-) |
| G1357833 | NA | other | downstream | 999975 | 26727295 ~ 26727828 (-) |
| G1359763 | NA | other | upstream | 408016 | 28163463 ~ 28164227 (-) |
| taok2b | LOC106579406 | other | upstream | 422268 | 28177715 ~ 28237354 (-) |
| G1361290 | NA | other | upstream | 1741666 | 29497113 ~ 29497555 (-) |
| G1361619 | NA | other | upstream | 2168424 | 29923871 ~ 29925154 (-) |
| G1363836 | NA | other | upstream | 3883990 | 31639437 ~ 31650697 (-) |
