prrt2 (LOC106579403)


Basic Information

Item Value
gene id prrt2
gene name LOC106579403
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28002303 ~ 28012976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565529.2
TGGAAGGGTATCTCTATTTTGATAACCCTAATTATTGCACATACCTTAATGTGGGAATGCTTTTAATAAGTAAACTGTTGGCAATAATTTTATCGCGTAAATGTGGCATTGGGAAATTAGGCACTCGACAAAGGATGCGTTTCTGTTTGGTGCTGCGCTATCAATCCATCCCTCCCACTGCACGTAGGCTGGGTTTATTCATTTCACGCTTTCCCCCTCTTATCTGATCCACATTCTCTGCACCCTCCCCACCCCCGAAGCGCAGCATTTCGAAAGGGCTCTACATCACGTAATTCAGTACTGTACACGTCTTCCAGAAAATTACAGAAGAGATGCGCGTATTTGGGGAACATACTTCAGAGTTGCGCATGCAAACATACTGAAGGCTGTAACGAATAATACATCGCGGAATGCAATTGGGTTCGCTTATGAAAATACGATCATGCAAAATCACGGGTCATTTCGGGTATTTTGAAGAATCTGTTGGATAAAAGGTGTATCGAAGGTAAGCAGAAGCCCACAAGCACACTCCTTTGTTATCAACATGGCTCTGAACACAAACATGAACCCAGCCCCCGTCATTTGGCCAGGCGAGGAACAGCCGTCCCTATTGGACCAAGATGCATCATTGTTAAGCCCAGCTCCCATCATCGCTGTGACTGTCACGTCCCCACCAGAGATGGAGGAACAAGAGATCCATAGCACCACCACCAGCTTTGGGCCCTGCCTGAGCCAAGCCACGGCAGGGGAACTGGTCATTGTGATCAATGAGAAAATGGAGAACAgTAATGGTATTCACCCAGCCCCTGCTGACACCACCTCCTCAGTCATCTCCTCACCTCCCAGAAGGCAGCAGTCCATTTCTTACTCCCACCACCCCCACAACAGCAAGACCCGGAAGGGGAGTCGTGCCGGTTCCATCGGCTACACCGCCTTCTCCCCACGGCCCTCCATCTCACGCCACTCCAGCATCGCCACCAACCCACCCATTGACAGAGCCAAGCCTAAAGACTACCTAATACTGGCTGTGCTGGCTTGCTTCTGCCCGGTCTGGCCAATCAACATTGTGGGGTTTGTCTACTCTGTTATGTCCAAGAACAGTCTGGAGCAGGGCAACCTGGATGGAGCTCGACGATTGGGTCGTCTCGCCAGGATGCTCTCTACAGTTTCACTGATAGGAGGGACAGTCATCATCATTGCCTGCATTGTAAACCTGGCGATAAATGTGAAATCCTGAGTATCGTCTTGCCGTGAAACAGGATCTAACAGTTGGATATCTGGAAACAGGACCCATCTAGCTGACTGTTCCTTTTTACCGTCTCTTACAGTGTAGTCATTAACTGGACATGCTATGAATATTATACACCTGATATTACATACCTTTCTATAATTGATATTACGTAATCCTTTGTGAATGAAAAAACGATATGCAAGATGCTTCCGCTCCGAACTGCTCTGGGCTTCTCCAATGATGGATCTTGCAGTGGAGAAACAGACGATCGGAATAATCCCTTACTTTGTATTCTGCCCAACACTGAACACTGTCCTTGACAAGGTGCCATTACCTCAACCACTGGCCATGATCAGAGAGACCGACCAAAAAATGAGATGTGGTGAGAAAGGTTGACAACAACAGAAGAGATTGTTTAAAGGAGGTGTGATCCATGTGAGAGAAACTGGGAGGATTGTTTCAGAGCTTGATTACCTACAATCATTGGAGGACAACAAAATGTCTGCTTAGTCCATCCTTCATTCCCCTGACGAAAGGACACATCAGAAATTCAGCTTGGCATAAAATCCCATCGGTACATGAAGGTGCTTGAGGGATTTGCCGTGCAATAGAAACTCAAAGAAGAAATTAATTTCAGAGGAAGAATACCCCTTTCATTTCTGAATAGGCTTAGATTCTAGTTTCAGTCAGTGCATATCCTTCCTGTCTTTCAGGCTACTGTTAGCCATTTTGTCATTTAAGAGCGAGGGCAGGCGAGAAACGACACTCACCAACACACAACTGCTGAGAAGATGGAAGGGATCAAACATTTCTTGGGCACGAAGCAAAGTCAAAGTAAAGGACACAATTGTGCCAAAAAAATAAAGTTGTCATTGTGCTTTAAAGCTTTTGGTGACCGCAATATATATGTGTTTGGCTTAGGACCTGGAAATAATGTGAAATGGATACAAAATGGGTGGCAGGAACACAAAATGATATGTAATTCAGTGACTTTATATCCATTTTCCACACTGAGGATGGGCCTTTAGACTGTTAATGAATGAGAGCATTGCTGACCAGAGAAGTGGAAAAATCTCAACAAATCATAGCAGGTTATTTACAGCGTCCATGAGAACGTGAATCGGTGAAACTTTACTTCTTGTACCTTTTTGATAATGTTTTAGATTTTAAACCACAAGTTTCATCATCTTATGCTTTTGAAGTACAGAGCTATCCATGATAGATggccgtggtgtgtgtgtgtccatatgcaTATACCAAATTACATAGTCACTGCACTGTTATGGCTGGTCACAATAAATTGAATTGCCAGTCTTCACTTTGGTGATACTGGAAATATAGTAAGAACCCTGGGTATCAAGTGTATGGGGACCCAGAGAATATAATCTGTAATCTTTCCGATTTAATCAAGTGGGTATCTGATCCCCATACTGAGTATCTAGTGGTGGACTTTAAAGGGAAGGTTCAGTTCACTTGACATTTTAATTGGTTTATTCACTTAATTGTGTTGTCGATTGATCCAGGCATTTATGTGCAGGGTTCAGATTTGTTTAAATCGCCACAGCTAACTAGAAAACAATGGAAGCAAAAGGGGGCATTGTTGATGGTAAAAATGTTGTGGCCAAATCAACTCGAATGAAATCAGTAGCCAGGTTTCCATCCATTTGGTGACAGATTTTTCATAATCTGTTTACAGAAAATTTGAATATttttccaccagtggtgtgttccCACCAAACCGAATTGCTGCGGATACAAACCAGTGCGTGACGATGTAGTGCACGCAATTTGATTTTTAAATCTtaattcaatgtgtttccattgcattttttaACTCGACCAAAAGTTTTGGCACAAACTGTTGCTTTTAATAGCTCATGTGCCTACTCTGGTTCTGGtacgtgcgctctagccaacagatCTCAGATACAGTACAAATAGACAAGTCTACATGAGATTATTACGGATAAGAGCAAGAATATTTTATTTTTctaacggcagtcaagcatcgatcatcatgtcgtCTGAATAAGACCCTGTATTTATTGGGAAGGAGTGTCATCACCGAGTCTCATCACCGTGAacgttcaccaccctgtgaagttaatcataatttatttaatctatagcctaataaactgcatggtttccccgagttgtagtgggagcaccacacaccatatcatcacgtgactccaagtttactttgatatgatggttattatatcaatatttgcgcctAGTGTTAACACTGCATAtttaattttaccgacacaaaaagatcccaccacgTCGAACGAAAAACATTCTGTCGGTATTCATCAAATTGGACCGACACGTCATGTTTCCGTCACAGCTGAAGTGATTTTTATATCGATACACAGTATGACTTTACTCTCATAACTGTGGATGGTAACGTGTTTGAAGTTCCTTGAAGTGATTTGTCCACAAAATTCAAACATGCAAATTATGCCCCTGTTACTCTTATAGTGTTTTGCTTAGCGGTGGCTAAAATAAATTGTTTTACCCCGCATTTAAAATGTTGACTCAATTTTCAATCATCAAAGCCGCAATTAAGTGAATAAATTGAtggatgaaaaaatatataataatgttTTTTACAATGTATCTACCCTAGAATCCAAGCAAAATTTCTGGTTAGTATCTACCTTTCATTCCCACAACTTCTGTTGCCCAACACTTTTGATGGGTAATTATTTAAAATTGGAACTTTAAGTTAAAGGTAGATGAAATGACATTGCCATGAGCAGCATCGCAAATATTGATGAGCGAGATGCAAGGCACTCACACGGTCACACACAGTATATGCACATGTGCACGGAAGAGAAGTTGAGCCTCAcacttcaacgctcttagttgttgcaGAAATTGACCCACTACGCTGTTTACTTAATGCATCTGTCATGCctctgagtctacctttaatttAGATACTACTATGCCTTGACCTCAGTCCATCAACATCAATTCCTACCCTAATGCAAATTTTCTGTATGATTTAATATATTAGGCATTTTTCCCCTCTGTTAGTGTTTAGATGTTAAAACTAATTGTAATCAAAAGTTGATATTATTCTGCAGATAAGGTAACGTATATATTGTGGCGTCTTCATAGTTATGAGTTAACATTATAGCTCTTGTAATGTGGACAGGAGAGGTAGTCTGCTAGTCTTTGTTAGTCTTTATTAGTCTTTGTATTACCATTGGCTACTATAATCTATGTGGATATTGGCATGTTGTTGATTTTCATTGATGTATGACAATTTTACAGAAGTACAACCAAAATCACATGGATAAGAAAACCTGGCACTAGAGATACTTGTATCCTTCCAAGGCACATTCTTAATAAAGACACATTGCATGAAAA
>TU1554075
cagtggtgtgttccCACCAAACCGAATTGCTGCGGATACAAACCAGTGCGTGACGATGTAGTGCACGCAATTTGATTTTTAAATCTtaattcaatgtgtttccattgcattttttaACTCGACCAAAAGTTTTGGCACAAACTGTTGCTTTTAATAGCTCATGTGCCTACTCTGGTTCTGGtacgtgcgctctagccaacagatCTCAGATACAGTACAAATAGACAAGTCTACATGAGATTATTACGGATAAGAGCAAGAATATTTTATTTTTctaacggcagtcaagcatcgatcatcatgtcgtCTGAATAAGACCCTGTATTTATTGGGAAGGAGTGTCATCACCGAGTCTCATCACCGTGAacgttcaccaccctgtgaagttaatcataatttatttaatctatagcctaataaactgcatggtttccccgagttgtagtgggagcaccacacaccatatcatcacgtgactccaagtttactttgatatgatggttattatatcaatatttgcgcctAGTGTTAACACTGCATAtttaattttaccgacacaaaaagatcccaccacgTCGAACGAAAAACATTCTGTCGGTATTCATCAAATTGGACCGACACGTCATGTTTCCGTCACAGCTGAAGTGATTTTTATATCGATACACAGTATGACTTTACTCTCATAACTGTGGATGGTAACGTGTTTGAAGTTCCTTGAAGTGATTTGTCCACAAAATTCAAACATGCAAATTATGCCCCTGTTACTCTTATAGTGTTTTGCTTAGCGGTGGCTAAAATGTTGACTCAATTTTCAATCATCAAAGCCGCAATTAAGTGAATAAATTGAtggatgaaaaaatatataataatgttTTTTACAATGTATCTACCCTAGAATCCAAGCAAAATTTCTGGTTAGTATCTACCTTTCATTCCCACAACTTCTGTTGCCCAACACTTTTGATGGGTAATTATTTAAAATTGGAACTTTAAGTTAAAGGTAGATGAAATGACATTGCCATGAGCAGCATCGCAAATATTGATGAGCGAGATGCAAGGCACTCACACGGTCACACACAGTATATGCACATGTGCACGGAAGAGAAGTTGAGCCTCAcacttcaacgctcttagttgttgcaGAAATTGACCCACTACGCTGTTTACTTAATGCATCTGTCA

Function

NR:

description
PREDICTED: tumor suppressor candidate 5 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565529.2 False 4618 mRNA 0.41 5 28002303 28012976
TU1554075 True 1182 lncRNA 0.38 2 28002765 28003972

Neighbor

gene id symbol gene type direction distance location
adprh LOC106579059 coding downstream 159848 27826183 ~ 27842455 (-)
mto1 mto1 coding downstream 246856 27727803 ~ 27755447 (-)
LOC118939521 NA coding downstream 310065 27690808 ~ 27692238 (-)
ppp1cab LOC107387951 coding downstream 314315 27668847 ~ 27687988 (-)
atp2a1l LOC106579065 coding downstream 340993 27646093 ~ 27661310 (-)
kif22 kif22 coding upstream 141 28013117 ~ 28048865 (-)
tlcd3bb LOC106579402 coding upstream 68935 28081911 ~ 28128839 (-)
maz maz coding upstream 152371 28165347 ~ 28176911 (-)
taok2b LOC106579406 coding upstream 167269 28177715 ~ 28237354 (-)
eif3c LOC100286610 coding upstream 285277 28298253 ~ 28369344 (-)
G1359406 NA non-coding downstream 501419 27500155 ~ 27500884 (-)
G1359378 NA non-coding downstream 550306 27451209 ~ 27451997 (-)
G1359274 NA non-coding downstream 661048 27339050 ~ 27341255 (-)
G1359276 NA non-coding downstream 665865 27334668 ~ 27336438 (-)
G1359243 NA non-coding downstream 803905 27198196 ~ 27198398 (-)
G1359717 pagr1 non-coding upstream 38569 28051545 ~ 28072528 (-)
G1359748 NA non-coding upstream 120421 28133397 ~ 28133627 (-)
G1359771 NA non-coding upstream 163981 28176957 ~ 28177207 (-)
G1359773 NA non-coding upstream 164296 28177272 ~ 28177556 (-)
G1359812 NA non-coding upstream 261790 28274766 ~ 28313407 (-)
G1359412 NA other downstream 474166 27527163 ~ 27528137 (-)
G1359321 NA other downstream 642741 27357284 ~ 27359562 (-)
G1359119 NA other downstream 888902 27111783 ~ 27113401 (-)
LOC110491745 LOC106609103 other downstream 1258848 26729304 ~ 26744821 (-)
G1357833 NA other downstream 1274475 26727295 ~ 26727828 (-)
G1359763 NA other upstream 150487 28163463 ~ 28164227 (-)
G1361290 NA other upstream 1484137 29497113 ~ 29497555 (-)
G1361619 NA other upstream 1910895 29923871 ~ 29925154 (-)
G1363836 NA other upstream 3626461 31639437 ~ 31650697 (-)

Expression


Co-expression Network