pagr1 (pagr1)


Basic Information

Item Value
gene id pagr1
gene name pagr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28049066 ~ 28081371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565524.2
CCCCGCCCCCGCTGTCTGTGTCTCGTTTCTCCAGAAAATGGCGCTGTGTTTACGTCTGTGTGTCTCCCATCTGCTTAGTTTTGAATGTTTAGACTTTTGATGCATTTATCAATTACTAACTGGTAGGATAATTTGCGTTGTCTACCCGATCTATCTGCGAAAACAACCTGACAATTGGATTAAGCATAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta
>XM_021565526.2
CCCCGCCCCCGCTGTCTGTGTCTCGTTTCTCCAGAAAATGGCGCTGTGTTTACGTCTGTGTGTCTCCCATCTGCTTAGTTTTGAATGTTTAGACTTTTGATGCATTTATCAATTACTAACTGGTAGGATAATTTGCGTTGTCTACCCGATCTATCTGCGAAAACAACCTGACAATTGGATTAAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta
>XM_036946688.1
CCCCGCCCCCGCTGTCTGTGTCTCGTTTCTCCAGAAAATGGCGCTGTGTTTACGTCTGTGTGTCTCCCATCTGCTTAGTTTTGAATGTTTAGACTTTTGATGCATTTATCAATTACTAACTGGTAGGATAATTTGCGTTGTCTACCCGATCTATCTGCGAAAACAACCTGACAATTGGATTAAGTGCGCACGCAAATTAATCAACCACATCAATATTGTATTGAAATCAATGGAACTTGGAAAATACCCGTGGCAACATGTCCCATTTAAACTCTTCTAAGAGACAAACCTCAAACTTCGGTATTCTACATATACGAgtccataagtattcaacctctttgttatgCATAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta
>XM_021565521.2
TTGCAATGCATGTTTCTGCTCACTAACATATAGTTAGTTAGCTGACTAAACTCCACTCCATGGTGAAGGAAGTTTATGATGAACTCCACCAAAGGAGTGAAGCAGAGACCAGGCTTTGTGGAATTCAGCTCCGACCACACCGATTCGCCCAAGCATAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta
>XM_021565522.2
TTGTCCACAGTGTAGTTGCatggttttgtttgtttgctgaGATTCAAACTTTATCAATTTGCTCATTACTGTTGATCTAAGATGGCAACTCATCGCATGTGCCAGTTGAATCTCAACAAGGAAACCAGTTGTATTTGATTAACGTTTATTgaaaaagtatggatttcagcaaacaaagaaaggcAGGCAACTACAGAGGACACACAAGTACAAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta
>XM_021565525.2
CACAGTGTAGTTGCatggttttgtttgtttgctgaGATTCAAACTTTATCAATTTGCTCATTACTGTTGATCTAAGATGGCAACTCATCGCATGTGCCAGTTGAATCTCAACAAGGAAACCAGTTGTATTTGATTAACGTTTATTgaaaaagtatggatttcagcaaacaaagaaaggcAGGCAACTACAGAGGACACACAAGTACAAGCATAGTAGCAACAACAAGATGATGCAGGCTGCAGAGGCTACAACAGACTCCTCActgagagagggaatagaggtgCTCGTAGTGGGGGACACTGAGAAAACCACTGGTAGGGAAGAGGAAGGTGACAAAGACGGGACAGATGTGGCAGCTGCAAAAGCAGAGGAGACCAAATCAGAGGATGCAAAAGATGGAGACAAAAGTGGAGATGCGATGGAAGGAGAGGGGcaggagggggagatggaagcAGACAACAAGCTGGAGGGAGGCGATCGAAAGCAGGTGGAGCGAGAGTGGGAAATCACCTATAGCGATGATGAAATCGAGGACCCCAAAAACTGGATGCCCCCTCCCGACGAAATCAAAAGACTGTATGAGCTCCTTTCAAAAGGGGAGAAGCTGGAACTGAACTTTGTGCCCCTTCCTCGAAGACCGCCTACACCTGAGAGGACCCCCTCGCCCGAGAGGGATGATGAGGACGAGGCgacaaaagagagggagagggaggatagagagcgCAAGGCCCCATCTCCCACAGAGTTTGATTTTGATGAAGAACAGATACAACAAACTCCAAAAAATGCTTTCATCAaccgacgcaggacaccagGGTCCTCGGCTCGGTCCTCTGTCAAACGGGAGGCTAGGTTGGACAAGGTACTGTCAGACATGAAACGCCACCGCAAAATTGAGGAACACATTCTCCGGACTGGACGAGACCTCTTCAAGAGCGAGAAGAGCAGCCGGGCTGGGCCCGAGGAGGCACTCTCTCCCAACAGTCAAAAAGAacgagaaaaggagagggagagagacagcgaccCCAGCAAAATCTTCTCGCCAAGACAAAGGCGATACTGAGACGGGGAAAAACTGCAGGCCAAAAGCTTCGAtgcctgatttttttttttaaatgccattACCGATTTTGTATGCTTGTGCGTTTTGTATCCTTGTAATAAACATtactcttttttttgttttta

Function

symbol description
pagr1 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

NR:

description
PAXIP1-associated glutamate-rich protein 1 isoform X1

GO: NA

KEGG:

id description
K14973 PA1; PAXIP1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565524.2 False 1164 mRNA 0.49 5 28049066 28081371
XM_021565526.2 False 1159 mRNA 0.50 5 28049066 28081371
XM_036946688.1 False 1326 mRNA 0.48 6 28049066 28081371
XM_021565521.2 False 1133 mRNA 0.50 5 28049292 28081371
XM_021565522.2 False 1189 mRNA 0.48 5 28049494 28081371
XM_021565525.2 True 1189 mRNA 0.48 5 28049499 28081371

Neighbor

gene id symbol gene type direction distance location
LOC110491776 LOC106579398 coding upstream 62807 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 225485 27776282 ~ 27823581 (+)
LOC110491774 LOC106579062 coding upstream 321270 27703383 ~ 27727796 (+)
sult1st6 LOC106579067 coding upstream 402989 27595428 ~ 27646077 (+)
LOC110491768 LOC106579066 coding upstream 453716 27561141 ~ 27595350 (+)
cabp5a LOC106579440 coding downstream 178912 28260283 ~ 28266022 (+)
nif3l1 nif3l1 coding downstream 197286 28278657 ~ 28287808 (+)
LOC110492866 LOC106521360 coding downstream 497998 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 751993 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 843446 28924817 ~ 29353460 (+)
G1358671 NA non-coding upstream 14168 28020384 ~ 28034898 (+)
G1358656 NA non-coding upstream 44542 28002309 ~ 28004524 (+)
G1358619 NA non-coding upstream 103810 27942376 ~ 27945256 (+)
G1358725 NA non-coding downstream 21794 28103165 ~ 28127485 (+)
G1358757 NA non-coding downstream 95924 28177295 ~ 28181077 (+)
G1358839 NA non-coding downstream 216898 28298269 ~ 28298893 (+)
G1358944 NA non-coding downstream 392507 28473878 ~ 28474231 (+)
G1358943 NA non-coding downstream 393523 28474894 ~ 28478300 (+)
G1358698 kif22 other upstream 1676 28046682 ~ 28047390 (+)
G1358292 NA other upstream 716791 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1734265 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1721283 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1862070 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2622276 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2873238 30954609 ~ 30955975 (+)
G1363401 NA other downstream 3153122 31234493 ~ 31235386 (+)

Expression


Co-expression Network