cabp5a (LOC106579440)


Basic Information

Item Value
gene id cabp5a
gene name LOC106579440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28260283 ~ 28266022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945853.1
TCGGTcagtcagacagagaggcagGGCAGACTGCTGAAAGGGGGAGTGGACACATATAGAGCagaggggaaaagaggagaagagagaaagagggctaTCCACTCATCTCCGACAGTAGGGATATTGATGCGCATACTTGAGTGAAGAGGAAAATAAAACGACATGAGTTTAGGAGCAGCATGTGTCTTCCTGAGGGGAGGGAAGCATATTGACAGAGAGCTGGCCGATGACGAAATTGAAGAGCTGCGCGAGGCGTTTGCTGAGTTCGACAAGGACAAGGATGGGCTGATCAGCTGCAAGGACCTGGGCAACCTGATGAGGACAATGGGCTACATGCCCACTGAGATGGAGCTGATCGAGCTGAGCCAGAACATCAACATGAACCTTGGTGGGAGAGTAGACTTTGAGGACTTTGTTGAGCTGATGGCCCCAAAGCTGCTGGCTGAGACTGCTGGGATGATCGGCGTGAAAGAACTGAAGGACGCTTtcaaagagTTTGACGCGGACGGAGACGGAGAGATCACAACAGAGGAGTTACGAAACGCCATGACCAAGCTGATGGGGGAGCACATGTCTCGAAGAGAGATTGACTCTGTGGTACGAGAGGCTGACAACAACGGTGACGGGACAGTAGACTTTGAAGAGTTTGTTAGAATGATGTCACGCCAGTGAGGAGGACTTCTTGGAAAAATGATTATTTCTCACACACACGTTTgtattactatccttgtggggatcaaacaattgattcccattaaaatcctattttccctaacccctaaccctaagccctaaaatagcctttttccttgttgGGACCGGCAAAATGTCCCCACAACCAaaaccaaacacaaacacagccccgcacacacccgcacacac

Function

NR:

description
PREDICTED: calcium-binding protein 5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945853.1 True 882 mRNA 0.50 7 28260283 28266022

Neighbor

gene id symbol gene type direction distance location
pagr1 pagr1 coding upstream 178912 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 274024 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 436702 27776282 ~ 27823581 (+)
LOC110491774 LOC106579062 coding upstream 532487 27703383 ~ 27727796 (+)
sult1st6 LOC106579067 coding upstream 614206 27595428 ~ 27646077 (+)
nif3l1 nif3l1 coding downstream 12635 28278657 ~ 28287808 (+)
LOC110492866 LOC106521360 coding downstream 313347 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 567342 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 658795 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 1158319 29424341 ~ 29480114 (+)
G1358757 NA non-coding upstream 79206 28177295 ~ 28181077 (+)
G1358725 NA non-coding upstream 132798 28103165 ~ 28127485 (+)
G1358671 NA non-coding upstream 225385 28020384 ~ 28034898 (+)
G1358656 NA non-coding upstream 255759 28002309 ~ 28004524 (+)
G1358839 NA non-coding downstream 32247 28298269 ~ 28298893 (+)
G1358944 NA non-coding downstream 207856 28473878 ~ 28474231 (+)
G1358943 NA non-coding downstream 208872 28474894 ~ 28478300 (+)
G1358945 NA non-coding downstream 269296 28535318 ~ 28540660 (+)
G1358960 NA non-coding downstream 277909 28543931 ~ 28544138 (+)
G1358698 kif22 other upstream 212893 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 683191 27561141 ~ 27595350 (+)
G1358292 NA other upstream 928008 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1945482 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1536632 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1677419 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2437625 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2688587 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2968471 31234493 ~ 31235386 (+)

Expression


Co-expression Network