nif3l1 (nif3l1)


Basic Information

Item Value
gene id nif3l1
gene name nif3l1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28278657 ~ 28287808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565535.2
ctccagtctagtaggtggcagtaatgcaacatttattggatgccaactgcggttaaacctcatcgaagaagAAAGTAACCCCAATAGCTGGCTCTCTCTCCACCAGTCTACACTAATGTTGACTGGATACAAGAATGTTTTCCAGAGAATTCTGTCATTGACCTGCAGAAGGAGCTACCACGAAAGCATCTCTCAAACACTCGCTTGTTCCACTTTCTCTTCTCACTCCAAATTGTCTGCCCTTCGCTCATCCTTTTTTTCTGACCCCTCTCATTGTAATATTAGGTCTTATCAGCTTTCTACCCATCTCCATCTCTGTCATTGCTACTCTTTTTCGTGCTCCCTTTCCCATTCTTCTCGTACAACAGGTCCAATGGATTTAAAGGAGGTTCTCAAGGTTCTGGAGGACCTCGCCCCTCTATCACTGGCAGAGTCCTGGGATAACGTTGGCCTATTAGTTGAGCCCATTAAATGTCGGCCTATCAAAACCATCCTGTTAACCAATGACCTGACCGATTCTGTCATGTCGGAAGCAGAAGCCATGAACTGCGATCTCATCATCTCTTACCACCCCCCGCTGTTTCATCCAATCAAGTGCTTGGTTTCAAAGAACTGGAAGCAGCGATTGGCTATCCGGGCGATTACGGCTGGAATAGCAGTGTTTTCTCCTCACACCTCTTGGGACAGCGTCAAAGGAGGCGTGAATGACTGGCTGGTTGGAGGAGTTGGGAGTGGCAAAGTTTCGGTGTTGAGTCAAGCCTTCAGTAGCGCCCCCCAGAGCCACAAACTGGAGTTTACAACCAGGAGTCAGGAGGAGCTCAACACCATCATGGCAGAACTGAAGGGGACGAATAGCGGTATCAATTTACAGCACACAACTGTCAGCTCTGAAACTGATGGCTTCTTCATAAGTCTGATCTGTCCAGACTCAGGGCTGACCCCCAGTGTTCAAACTCTGTTACAACACGCCACTCCCAGCCAGTCTCTCAGTATCCTTCAAGTAAAAAAGCGTCCTCTCCCAGGCTACGGCCAAGGGCGACTAAGTGTTTTGGACGAGCCCGTAACTGTGGCGGCAGCCGTCCAGCGAATGAAATCACACCTGGGTTTGAATCACCTTCGACTGGCCCTCGGAGCCCAGCAAACTTTAGAGTCCATTGTAAGCACTGTGGCAGTGTGTGCTGGGTCCGGAGGCTCAGTATTGAATGGAGTGAAAGCAGACCTCTACATCACAGGTGAGATGTCCCATCACGAGGTCCTGGACTCCGTCGCTGCGGGTGCCAGTGTGATCCTCAGTGACCATAGCAACAGCGAGCGTGGTTTCCTGGCCGTGTTCAAGAAGAGGCTGGCAGGGCATCTGTCCAACTCTGTTACCGTGGCGCTGTCACGGGCTGACAGGGACCCCCTGGAGGTGGTCTGAGATGCTTACAGTTTTCCCCAGCTGGCAGCCCACAGACCGAATCTATTCCGCAGGTGGTTTTCTTAGCAAATAATTAATACATTCATATTTAGACATAAGGCTGTAAAAACACAAGGAAATCAACTTaagtgatttttttttgtgtgtttttttgggggggtaatctgttcaagtattcccacacataatagagatGTGATCGTATActaatgtaagcaaggtttgaaatgattgtttaAGTGAAATATGTTTGGGCTTCTTCCTGTctatttgcagtctacaaatgatttgtaattatgttccaacCTTCCCGATCATCCCCTCAAGGAAAAAAATAGGACTGTgtttgaatctagttgatgatctctgcgTTAAAGGATTTAATAAATAATGCGATAAGGAAATGCAGGACTAATGTATACAACTGAATAAGGTAATCCTTTGGGTGATATTCAAAGTATGCATCTACATCAGTAGTCACCAGAGCATTCCTAGTCAATCaccaaacaatgtaaaaaaataaatatttaaatccTTGCA
>XM_021565536.2
TGTTACCATGCTTGCATTTCCAATTCATAGTTTTTGCCTATTAATTGGAAActtacatttaaaatgtaacgTATGAATCACACCAGTCTGAACATGCAAACAGAAACACCTTTGTTTGTTGGTAGCTAGCGTATTGCTGTGGGCCCTGTTCCAGGTTGGGAGCCAGCTATGTAATGTTAGCGAAGCTATTATAAATGCCTCTAAGTTACTTTACCTAGCTAGTTTGTGGAGTTGCTCTGGCTCATATTCGTGTCTACACTAATGTTGACTGGATACAAGAATGTTTTCCAGAGAATTCTGTCATTGACCTGCAGAAGGAGCTACCACGAAAGCATCTCTCAAACACTCGCTTGTTCCACTTTCTCTTCTCACTCCAAATTGTCTGCCCTTCGCTCATCCTTTTTTTCTGACCCCTCTCATTGTAATATTAGGTCTTATCAGCTTTCTACCCATCTCCATCTCTGTCATTGCTACTCTTTTTCGTGCTCCCTTTCCCATTCTTCTCGTACAACAGGTCCAATGGATTTAAAGGAGGTTCTCAAGGTTCTGGAGGACCTCGCCCCTCTATCACTGGCAGAGTCCTGGGATAACGTTGGCCTATTAGTTGAGCCCATTAAATGTCGGCCTATCAAAACCATCCTGTTAACCAATGACCTGACCGATTCTGTCATGTCGGAAGCAGAAGCCATGAACTGCGATCTCATCATCTCTTACCACCCCCCGCTGTTTCATCCAATCAAGTGCTTGGTTTCAAAGAACTGGAAGCAGCGATTGGCTATCCGGGCGATTACGGCTGGAATAGCAGTGTTTTCTCCTCACACCTCTTGGGACAGCGTCAAAGGAGGCGTGAATGACTGGCTGGTTGGAGGAGTTGGGAGTGGCAAAGTTTCGGTGTTGAGTCAAGCCTTCAGTAGCGCCCCCCAGAGCCACAAACTGGAGTTTACAACCAGGAGTCAGGAGGAGCTCAACACCATCATGGCAGAACTGAAGGGGACGAATAGCGGTATCAATTTACAGCACACAACTGTCAGCTCTGAAACTGATGGCTTCTTCATAAGTCTGATCTGTCCAGACTCAGGGCTGACCCCCAGTGTTCAAACTCTGTTACAACACGCCACTCCCAGCCAGTCTCTCAGTATCCTTCAAGTAAAAAAGCGTCCTCTCCCAGGCTACGGCCAAGGGCGACTAAGTGTTTTGGACGAGCCCGTAACTGTGGCGGCAGCCGTCCAGCGAATGAAATCACACCTGGGTTTGAATCACCTTCGACTGGCCCTCGGAGCCCAGCAAACTTTAGAGTCCATTGTAAGCACTGTGGCAGTGTGTGCTGGGTCCGGAGGCTCAGTATTGAATGGAGTGAAAGCAGACCTCTACATCACAGGTGAGATGTCCCATCACGAGGTCCTGGACTCCGTCGCTGCGGGTGCCAGTGTGATCCTCAGTGACCATAGCAACAGCGAGCGTGGTTTCCTGGCCGTGTTCAAGAAGAGGCTGGCAGGGCATCTGTCCAACTCTGTTACCGTGGCGCTGTCACGGGCTGACAGGGACCCCCTGGAGGTGGTCTGAGATGCTTACAGTTTTCCCCAGCTGGCAGCCCACAGACCGAATCTATTCCGCAGGTGGTTTTCTTAGCAAATAATTAATACATTCATATTTAGACATAAGGCTGTAAAAACACAAGGAAATCAACTTaagtgatttttttttgtgtgtttttttgggggggtaatctgttcaagtattcccacacataatagagatGTGATCGTATActaatgtaagcaaggtttgaaatgattgtttaAGTGAAATATGTTTGGGCTTCTTCCTGTctatttgcagtctacaaatgatttgtaattatgttccaacCTTCCCGATCATCCCCTCAAGGAAAAAAATAGGACTGTgtttgaatctagttgatgatctctgcgTTAAAGGATTTAATAAATAATGCGATAAGGAAATGCAGGACTAATGTATACAACTGAATAAGGTAATCCTTTGGGTGATATTCAAAGTATGCATCTACATCAGTAGTCACCAGAGCATTCCTAGTCAATCaccaaacaatgtaaaaaaataaatatttaaatccTTGCA

Function

symbol description
nif3l1 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

NR:

description
NIF3-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565535.2 False 1957 mRNA 0.46 7 28278657 28287808
XM_021565536.2 True 2103 mRNA 0.46 7 28278770 28287808

Neighbor

gene id symbol gene type direction distance location
cabp5a LOC106579440 coding upstream 12635 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 197286 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 292398 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 455076 27776282 ~ 27823581 (+)
LOC110491774 LOC106579062 coding upstream 550861 27703383 ~ 27727796 (+)
LOC110492866 LOC106521360 coding downstream 291561 28579369 ~ 28607901 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 545556 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 637009 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 1136533 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 1193836 29481644 ~ 29492902 (+)
G1358757 NA non-coding upstream 97580 28177295 ~ 28181077 (+)
G1358725 NA non-coding upstream 151172 28103165 ~ 28127485 (+)
G1358671 NA non-coding upstream 243759 28020384 ~ 28034898 (+)
G1358656 NA non-coding upstream 274133 28002309 ~ 28004524 (+)
G1358839 NA non-coding downstream 10461 28298269 ~ 28298893 (+)
G1358944 NA non-coding downstream 186070 28473878 ~ 28474231 (+)
G1358943 NA non-coding downstream 187086 28474894 ~ 28478300 (+)
G1358945 NA non-coding downstream 247510 28535318 ~ 28540660 (+)
G1358960 NA non-coding downstream 256123 28543931 ~ 28544138 (+)
G1358698 kif22 other upstream 231267 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 701565 27561141 ~ 27595350 (+)
G1358292 NA other upstream 946382 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 1963856 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1514846 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1655633 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2415839 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2666801 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2946685 31234493 ~ 31235386 (+)

Expression


Co-expression Network