LOC110492866 (LOC106521360)


Basic Information

Item Value
gene id LOC110492866
gene name LOC106521360
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28579369 ~ 28607901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567340.2
ATGTATGAGAAGTTAACCATAATGAACCTGCAAAGTGGCTTGAACTGGACTGAGCCTAACAACTGGTACCATGACCTGTCCACAGTACAAACACACCACAGCACAGgaagaggaggagtaggaggagggccGGTCGAGAGGGACGAGGGCGAGGAGTCACAGCTGAGGCTGCAGCTGAAGAGGAAGCTACAGAGGAACAGGACCAGCTTCACTCAAGAGCAGATTGAGGCACTGGAGAAAGAGTTCGAAAGAACACATTACCCAGACGTCTTCGCGCGAGAGCGATTAGCCAACCAGATTGACCTTCCAGAGGCGCGGATACAGGTGTGGTTTTCCAACCGAAGAGCCAAGTCGAGGAGAGAGGAAAAGCTTCGCAACCAGAGGAGGTCATGGGGTGGGACGTCCTGTTCCCAGTCTCACGCCCCCCTAAGCACTTCCTTCAACACCTCTGTCTATCACCATCAACATGGCAGCAGTTCAGGGTCTATGCTGATTCAGAGGGTGTCTACCCTGCCCAGCTACAGctatctgtctgtcctctccactgGAGTCCAGAAAGTGTCATCCCAGTCTGCCAACTCTTACTCTTGCATGTTACCCCCATCCCCTTTCACCCCGCAGAAATTTGACTCTTCAGAGTACCCATCCCATATGCCTCCACCGTCCTCTGCCAACTCAAACACTGGTGAGttttacactgtgtgtgtgtttgtgtgtgtgagtcggtTGGTCAGTATTCTGCCCTTGGAATTGCGTTCTCATGCAAACCTAGACAGATAGCtaacaactaagtcttcaataaaactcccaaggcgtgacttttcttgaataaatatattgaaaatgtttatgttgtgaaactgcaaaatacagaaaataatatactttagtattcaattcatatcgacatactgtagctgtacattatacatttcaAGTTGAAGTTGCATTAATACA

Function

NR:

description
paired box protein Pax-6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567340.2 True 957 mRNA 0.48 6 28579369 28607901

Neighbor

gene id symbol gene type direction distance location
nif3l1 nif3l1 coding upstream 291561 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 313347 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 497998 28049066 ~ 28081371 (+)
LOC110491776 LOC106579398 coding upstream 593110 27902972 ~ 27986259 (+)
LOC110491775 LOC106579060 coding upstream 755788 27776282 ~ 27823581 (+)
si:ch211-214e3.5 LOC106579413 coding downstream 225463 28833364 ~ 28857801 (+)
nrg3b LOC106579414 coding downstream 316916 28924817 ~ 29353460 (+)
LOC110491795 LOC106579416 coding downstream 816440 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 873743 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 895508 29503409 ~ 29511609 (+)
G1358979 NA non-coding upstream 3546 28575424 ~ 28575823 (+)
G1358973 NA non-coding upstream 11599 28567196 ~ 28567770 (+)
G1358972 NA non-coding upstream 14110 28564754 ~ 28565259 (+)
G1358962 NA non-coding upstream 31419 28547676 ~ 28547950 (+)
G1358960 NA non-coding upstream 35231 28543931 ~ 28544138 (+)
G1359062 NA non-coding downstream 112807 28720708 ~ 28722576 (+)
G1360136 NA non-coding downstream 164724 28772625 ~ 28772825 (+)
G1360170 NA non-coding downstream 195351 28803252 ~ 28803455 (+)
G1360178 NA non-coding downstream 202253 28810154 ~ 28810361 (+)
G1360190 NA non-coding downstream 210149 28818050 ~ 28818255 (+)
G1358698 kif22 other upstream 531979 28046682 ~ 28047390 (+)
LOC110491768 LOC106579066 other upstream 1002277 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1247094 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2264568 26283071 ~ 26314809 (+)
G1361207 NA other downstream 1194753 29802654 ~ 29804368 (+)
G1361671 NA other downstream 1335540 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 2095746 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 2346708 30954609 ~ 30955975 (+)
G1363401 NA other downstream 2626592 31234493 ~ 31235386 (+)

Expression


Co-expression Network