Item | Value |
---|---|
gene id | si:ch211-214e3.5 |
gene name | LOC106579413 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048580.1 |
NCBI id | CM023234.2 |
chromosome length | 78541548 |
location | 28833364 ~ 28857801 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
zinc finger protein 518A-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021565557.2 | False | 5030 | mRNA | 0.46 | 5 | 28833364 | 28857801 |
XM_021565558.2 | False | 4949 | mRNA | 0.46 | 4 | 28833364 | 28857801 |
XM_036946706.1 | False | 5024 | mRNA | 0.46 | 5 | 28833364 | 28857801 |
XM_036946704.1 | False | 4987 | mRNA | 0.46 | 5 | 28833403 | 28857801 |
XM_036946707.1 | False | 4860 | mRNA | 0.46 | 4 | 28835509 | 28857801 |
TU1554649 | False | 622 | lncRNA | 0.43 | 4 | 28833415 | 28843605 |
TU1554648 | True | 322 | lncRNA | 0.44 | 1 | 28856478 | 28856799 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110492866 | LOC106521360 | coding | upstream | 225463 | 28579369 ~ 28607901 (+) |
nif3l1 | nif3l1 | coding | upstream | 545556 | 28278657 ~ 28287808 (+) |
cabp5a | LOC106579440 | coding | upstream | 567342 | 28260283 ~ 28266022 (+) |
pagr1 | pagr1 | coding | upstream | 751993 | 28049066 ~ 28081371 (+) |
LOC110491776 | LOC106579398 | coding | upstream | 847105 | 27902972 ~ 27986259 (+) |
nrg3b | LOC106579414 | coding | downstream | 67016 | 28924817 ~ 29353460 (+) |
LOC110491795 | LOC106579416 | coding | downstream | 566540 | 29424341 ~ 29480114 (+) |
irf3 | irf-3 | coding | downstream | 623843 | 29481644 ~ 29492902 (+) |
LOC110491796 | NA | coding | downstream | 645608 | 29503409 ~ 29511609 (+) |
LOC110491797 | LOC106579418 | coding | downstream | 676241 | 29534042 ~ 29629011 (+) |
G1360190 | NA | non-coding | upstream | 15109 | 28818050 ~ 28818255 (+) |
G1360178 | NA | non-coding | upstream | 23003 | 28810154 ~ 28810361 (+) |
G1360170 | NA | non-coding | upstream | 29909 | 28803252 ~ 28803455 (+) |
G1360136 | NA | non-coding | upstream | 60539 | 28772625 ~ 28772825 (+) |
G1359062 | NA | non-coding | upstream | 110788 | 28720708 ~ 28722576 (+) |
G1360238 | NA | non-coding | downstream | 6908 | 28864709 ~ 28865439 (+) |
G1360243 | NA | non-coding | downstream | 15252 | 28873053 ~ 28873278 (+) |
G1360245 | NA | non-coding | downstream | 20513 | 28878314 ~ 28878528 (+) |
G1360248 | NA | non-coding | downstream | 23753 | 28881554 ~ 28881868 (+) |
G1360249 | NA | non-coding | downstream | 24889 | 28882690 ~ 28883403 (+) |
G1358698 | kif22 | other | upstream | 785974 | 28046682 ~ 28047390 (+) |
LOC110491768 | LOC106579066 | other | upstream | 1256272 | 27561141 ~ 27595350 (+) |
G1358292 | NA | other | upstream | 1501089 | 27329311 ~ 27332275 (+) |
mpp3b | LOC106579097 | other | upstream | 2518563 | 26283071 ~ 26314809 (+) |
G1361207 | NA | other | downstream | 944853 | 29802654 ~ 29804368 (+) |
G1361671 | NA | other | downstream | 1085640 | 29943441 ~ 29943756 (+) |
LOC110492869 | LOC106599969 | other | downstream | 1845846 | 30700999 ~ 30704172 (+) |
G1362902 | fgfr2 | other | downstream | 2096808 | 30954609 ~ 30955975 (+) |
G1363401 | NA | other | downstream | 2376692 | 31234493 ~ 31235386 (+) |