nrg3b (LOC106579414)


Basic Information

Item Value
gene id nrg3b
gene name LOC106579414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 28924817 ~ 29353460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565559.2
GAGCTTACTCCCAGAATCTCTGCCTCCTCtttcgttctctcgctctctctctctcactctctctcgccctcACTTTCATTTAACAGTGATAGGGAAGGCAGTGTGGTCTCTGCCTCTATCTCGCTTTCACAAGCAAAAGCTTACAAGGGCGCACGCACGCAGTGTGTCGGAGAAGGGATGGGGCTGTTGTTGTTTGTCAGTCTGGAATCCTGCTGAGAGTGAAAGGGAGGAAAGCGCTGGTCGAGAGCCGTGGAGCCCACATCACTCACAGCGGAGTGAGCaaatctttctatctctcccagTAGGCAGCCTTCAAGAACAGCAGCCGCATCAGTTTTTCAGAGCAGcactcttccccctcccctcctctttcttgctctctctgtttcccttgcTGTCGCTCACTCTCCCACTCTCACCTCCTTCGGCAATGTGGGAATGTAGCGGACTGATGTAGCAAACAAGCAGCCAAGGCTTTCAGATTTTTCTACCACAATGACAGGCGGTGGACAGACAGCTGGAGAAAGACGGACAGTCCAGGAGATCTGAGGGGAAAGGGATTGGATGGGGATCAGTTGGATTTACCCCCCCCCTCTTCCGCCCCACCAGCCACATCCAGACAgatcctctcccccactctctctccagtTCCACTGGCTCTCTTCATGCAGGATTACCGTTCACCACTACAGCTAAAACAACGCTGCACGGGGCTGCCTGGAAGGACAGCAAGGGGGAGGCTGACCCAAGGTAGGGAAGAATACTGTAGAGGAAGCCCCTGGACTGGAGCCTATATAAAACACCTGAGAAATAAAAAGAGGGCAACCCCTCAGAGCCACAGAGGAAAAGGAATCGAGGGCCGTGGATCAGAGTGCCATTGAGAAGCAGTGAGTTGGAGCCGCAGAGGAGGTTTGTTTCTCATTGACACACACACGGGATTTACAGCTATGGTCTGAAGCTTGCCACACCGTGAATCGATGTTCTCCTGCCTGCCTTTTTCATCAGCTTTTTTCCTCATACGGGAGTGAAGTATCTTGGGATTTACCGTTGTTTCGTTACCACCTAACTACAGCGTGGCTCGCCCCCTCCGTTCAGCATCCTCACCTATCCATGTCCaacctgtgtgtctgtttgtttgtgtgtttgtttgtgtgtgtacttaGCTAGCTCTGCGCCAGAGGGAGTGTATATTTGCTTACGTGTGCATCCTCGTGAGCTGCTTGGCTTGTAATTACTTGTACGTGTCTGTGGGTGCCTtcttgtgtctatgtgtgtgtgggtataaaTGTAGACATTTTGTGTGGGTGCATTGGTAAGAtgcccactgttggttctgttccCCATCCCCTGTCTCGTTTGCGCCCTTTTGTCATTGGGCCTCCGGTTTGACCCCTGAACTTTAACGGCATCGGCAGGATGAGTGAGCACTCAGGAACGAGCACTCTGGGGGCCATGACCCTGGAGGAACCCGGGGACGAACAGGCCTCCCCTCGGGCCCCGGGGCCTCTTCGCTGTGGGCCCTGTGCCGTGTGGTCCCGCCAGCAGACCTGGCTGTGTGCGGTGCCCTTGGTGATGGGCTTTGTGGGCCTTGGCCTCAGTCTAATGCTGCTTAAATGGATTGTAGTGGGCTCCATTCAAGACTATCTGCCCACGGACCTGGTGGATGCCAAAGGCATAGGGCAGGATCCCATCTTTCTCTATGAACCCAGCGCCCTGCCCAAACGACCAGACACTATGACCACGACTTCCACCACCAACCCTCTAGCGTCCGATGGCACGGCCCCAGCCCCGAGAACTCGATTTGTGCTGCCCTCCAACCACTCGGCCCCGCACCTCCACAACCGGATCGGCAGTGGCACCCACGTGATgggcaccaccaccactacccgcACCACTCGACTTGTCCTGCCTGGGGGTAAAGAGATGACCCCGCACAGCACCACGGTACAGCAGAACGGCAACACGGGAAACGGTCGTAAGGATAAGGACCCCCCGAACTCACAACCTAGTCCAACATCAACAACTACCAAAGCCACAACCAAGGTGCAATCGCCCACTTCTCCACCACCTCCCCCAGCCAAGCCCACCGGGCGCTGGAACCCTGGACGCTCTGTGAAAGGTCCAGCCACACGCCCACACCACCGCTTCAGAACACTGGCCCCCACATCCCCTGGTCTGCGTTCAGAGGTCTTCAAGCCTTGCATCGATGACAAGGACCTGGCCTTCTGCCTCAACGAGGGCGAGTGCTCCATCATTGAGACAGTAGCAGGAGTGCACAGACACTGCAGGTGTAAAGAGGGTTACCACGGACTACGCTGTGACCAGTTTGTACCCAAGACGGACTCCATCTTATCTGACCCAACGGGTGAACTGGGCATCGAGTTCATGGAGAGCCGTGAGACTTACCAGAGACAGGTGATGTCCATCTGCAGCATCGCTTCAGGAATCAGTTTTCTCGGAGTGGCGTGCATGGCTCTCTATTGCCGCAACAAgagacagagggaaaagCTACAGACGCAATTCTCTGAGAGCTGGAACCTGAGGGAGTGTGGAATCAACTCCTCTGGGCAGATGTCTAAATCTTGCTCCAGGCCTCAGTGCGGCCTGCAGCTTCAAAAGTGTTGCAAATCTCATGGGTCCTCCCCTCCTGAAGGGGACAGCAGTCTGCCAGCTGGCGCACCAACAGCAGCTCCACCTATTCTCAACAGAGCACTCTCCAAAGGGAAGCGCTTCAGGAGTAGCTCCCTGTCCCTCAGTCCAGTCCAAAGACACTGGGACACTCATCACATGAGGACCCCGCCCATCTCTCGAGGACCAAGGGTTGCTAGCCCCGCATATAAGCACCTGGAGGAGGTGGAGCCTGCAGAGATGGAGGCAGAGTCTTTAAGAGGGTTTGACACTGGAAGGGGTGGAGGTGACGATCGCCAGCACAGCGGGTTCCCAAATATGCAAACCATGTCTCGTTCCGCAgagaagaagggatggagggatgttcCCTGCACCCGTCTTGACAGAGGAATAACAcccgctcctccctctctccgcaCGCACTCCGTCCCCATCATCCCCTCTCTCCAGGAACACGACCGCGAGAGGGGTCACGTGGACGGGAGCAGGGAGAGGGTGTCGCATGGAGGTCTTGCCGGGCCAGGTTACATGGCGCAGGCACCTGCCGGTAGCAGCAGCCACACCCCCCCTAACTCCTCCACCTCTGTGTGTGTACTAGAATTAGAGGACAGACCCAGTCATATGCGTCCCTACAACATCAAGACTGCACTGGTGTCAGAGACAAGCCCTATTCACACGCACCAGGGCTCCTCTGAAACTCTAGTAGGGCCAGGGGACCTGTTCCAACACTCTAGCCTTGTGGCCTCTGGGACAGCAGAATCCGGATCAGGTGTTGCCGGGTTGAACAGCACAAACACTTTTATTGCTGTGACCGTGCTGGAGTCCAAGAAAAAGAGCATGCGGTACACACCCAGACTGCTCTACAGCTTTCCCAAGAGCAGGGGTCCTCAGGCAGGTGTCCAAAGAGAGGCCCAGGGGCTTGGTAAACAAAACATTGCCCTGGTGAATGGAGGGGCAAACAGCTTCCTGTCAACAGTGGTGGGAAAAGGTGCTGGAATTTCTTGTGCCAAACTTTCTGCCAGCTGATTGGATAATTTCTCGCCAACTTGCAAGGAGAGACTCCGCCAACCTGCATCGATGACACGGGAGGGGATAGGACCACCTGCTTAACTAATTGGCCCCTAGTTTCTGTAAAAGAGCCACAGCAGCCTGGACTGCAGAGAGgaatttatttatacatttaagacactgaaaacacacacacacatgtatgtgaATAATGTGAAACAATGCAGACAGACATAAAGACCAGTGGGAGCTTGatataaatgtgta

Function

NR:

description
pro-neuregulin-3, membrane-bound isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565559.2 True 3903 mRNA 0.55 9 28924817 29353460

Neighbor

gene id symbol gene type direction distance location
si:ch211-214e3.5 LOC106579413 coding upstream 67016 28833364 ~ 28857801 (+)
LOC110492866 LOC106521360 coding upstream 316916 28579369 ~ 28607901 (+)
nif3l1 nif3l1 coding upstream 637009 28278657 ~ 28287808 (+)
cabp5a LOC106579440 coding upstream 658795 28260283 ~ 28266022 (+)
pagr1 pagr1 coding upstream 843446 28049066 ~ 28081371 (+)
LOC110491795 LOC106579416 coding downstream 70881 29424341 ~ 29480114 (+)
irf3 irf-3 coding downstream 128184 29481644 ~ 29492902 (+)
LOC110491796 NA coding downstream 149949 29503409 ~ 29511609 (+)
LOC110491797 LOC106579418 coding downstream 180582 29534042 ~ 29629011 (+)
LOC110491799 LOC106578370 coding downstream 360818 29714278 ~ 29727319 (+)
G1360256 NA non-coding upstream 27401 28892065 ~ 28897416 (+)
G1360249 NA non-coding upstream 41414 28882690 ~ 28883403 (+)
G1360248 NA non-coding upstream 42949 28881554 ~ 28881868 (+)
G1360245 NA non-coding upstream 46289 28878314 ~ 28878528 (+)
G1360243 NA non-coding upstream 51539 28873053 ~ 28873278 (+)
G1360950 NA non-coding downstream 14376 29367836 ~ 29368083 (+)
G1360967 NA non-coding downstream 28178 29381638 ~ 29381842 (+)
G1360978 NA non-coding downstream 35851 29389311 ~ 29389598 (+)
G1360998 NA non-coding downstream 55088 29408548 ~ 29408806 (+)
G1361033 NA non-coding downstream 161992 29515452 ~ 29515694 (+)
G1358698 kif22 other upstream 877427 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 978976 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 1347725 27561141 ~ 27595350 (+)
G1358292 NA other upstream 1592542 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 2610016 26283071 ~ 26314809 (+)
G1361207 NA other downstream 449194 29802654 ~ 29804368 (+)
G1361671 NA other downstream 589981 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 1350187 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 1601149 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1881033 31234493 ~ 31235386 (+)

Expression


Co-expression Network