LOC110491794


Basic Information

Item Value
gene id LOC110491794
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29412470 ~ 29423653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468900.2
GGTTGGAACAATGGGAGACATAGGGTGCGttcataaattcactctggctatctactccgatttcagagcactctcgccAGACCACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGGTGAGAACTCCGATGAAGATAGAAGTTCTATTGCTGAGAGCTCAGATGACAACTGCTATACTTTCTGAAATCCTACACcacccctgcctctttctctctgtctcactttctcccacaggagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGGTTTTTGTGAGTTGCAAAAGAGTCCTTGATCTCAATGGGACTGCTAAAATAAATAAAGGtcttaacaaataaataaatgcattaaGCACTGTGTG
>XR_002468901.2
GGTTGGAACAATGGGAGACATAGGGTGCGttcataaattcactctggctatctactccgatttcagagcactctcgccAGACCACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGgagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGGTTTTTGTGAGTTGCAAAAGAGTCCTTGATCTCAATGGGACTGCTAAAATAAATAAAGGtcttaacaaataaataaatgcattaaGCACTGTGTG
>XR_002468903.2
GGTTGGAACAATGGGAGACATAGGGTGCGttcataaattcactctggctatctactccgatttcagagcactctcgccAGACCACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATgagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGGTTTTTGTGAGTTGCAAAAGAGTCCTTGATCTCAATGGGACTGCTAAAATAAATAAAGGtcttaacaaataaataaatgcattaaGCACTGTGT
>TU1555727
CACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATgagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGG
>TU1555728
ATTATTAGAATCACTGACTGAAGATGTTTTTCCAACAGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGGTGAGAACTCCGATGAAGATAGAAGTTCTATTGCTGAGAGCTCAGATGACAACTGCTATACTTTCTGAAATCCTACACcacccctgcctctttctctctgtctcactttctcccacaggagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGG
>TU1555729
CACAGTATAACTGCTGAATTTAAGAATGCTCAACAccagttgaatatggccggtgtcagtaaacgttggcaaaatgCGTAATTATATTGTTGCCaatagcacagttacagtcaccaacgctctggataacacgAAAACAGCCTAATCAGCTCTACTTGGCAGGTACGGACAGAGATTATCACACTACTGTCAATGGACTGGAATAAGAGGAAGTTCACCAACATGGATCGCATGTAATACTCGTCTGAAGaggtggaccaagatgcagcgtgggAATGTCAAAAGACTGGAGGAGACCAGCTTTGCGAAAAGCGGGAAGAGCTAGATATCAACACCGCTGTGCTACAGGAGTGGATTACTGAGGTCCAGCAGTGGCCTGATGACACACTTCAGGATCGTCAGACGGGGCATCTCCAGAAGAAGCTTGAAGGGCTTTACCACAGTGTGAAAGAGGAAACTACCTCTACCATTTGACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGgagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGG
>TU1555730
gttcaagggggccgaatactttcgcaaggcactgtatatctgaatATACAGTCCATCTAATCACCCTTTTTATTTTGACGGCAACAAGAGGCGGCATCTGATTCTGAGAAATTGAGGACAAAGCAGCCTTGACAGCTGCCATTGTTCAACTTCACGAGCAGCAGGCAGAGTTTAGGCTCCCCACAGTGGATGAGCTGCTCAATACTGATAACTTTGTGTGGCCATGGGAGAGACTTGGCACCAGTAAATATATGATTGCAGAAAGTATCTTTTGTGATTGAATGTTTACCTTCAGCGTAGGCTGCAATCATTGCTGTTCTGTTATATACCTCTGGGTTTACAGCTCACAGGCACCTGCCATCAAAAGGCAATCTTCAACAGACTGATGTTAGTGAACAGActgcaggaggaagagaggatccTGGTCCGGGAGATGAAGAGGCACTGGGGGAGCCTACAAAGAGCAGTGGGAACTGTGGCGGCACTGTACCTACAAGATCAGAAAGCGAGTTGAGGTAATGCAGTGGAGTTTTCAGAGGGAGGGAAGAATGGCCTTCTCTGCCACCTGAAGAAAAGATTGAGTGAACTGACACAAGACCAAGTTGACACCAGGAATACCTACCTCAAGCTGATTCTGGGAGAAGGGGATATTTTTTTATGACTGATGTAGGTGAGAACTCCGATGAAGATAGAAGTTCTATTGCTGAGAGCTCAGATGACAACTGCTATACTTTCTGAAATCCTACACcacccctgcctctttctctctgtctcactttctcccacaggagagggagaaggtcGCCAACCACCTCCCTTGGGAGCAGCCTGGTCTCCTGACGTTGACCCCTCACCTTCTGAACCCATCCAGGGAAATGTAATTTGCCTGATGATGTGCTAGTGGAGAAGGAATCTGTCAtgtttcctctcctcaccacctctcTTCCGGTCCTAGACTATGGCAACATCATCTGCAACTCATACTGTTGGTTGAGGACCTCTTACTGAGGAATGTGGTtcttcattattatttatttgtatttacttcAAGTATTTTCTATGCTGCCATGATTGGGG

Function

NR:

description
uncharacterized protein LOC101169027

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468900.2 False 1387 mRNA 0.46 6 29412470 29423653
XR_002468901.2 False 1269 mRNA 0.46 7 29412470 29423653
XR_002468903.2 False 1264 mRNA 0.46 7 29412471 29423653
TU1555727 False 1089 lncRNA 0.47 7 29412564 29423571
TU1555728 False 1086 lncRNA 0.47 5 29412564 29416501
TU1555729 False 1093 lncRNA 0.47 7 29412564 29423571
TU1555730 True 1077 lncRNA 0.47 2 29412564 29413744

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2 coding downstream 645468 28626132 ~ 28767002 (-)
LOC110491790 LOC100194624 coding downstream 871825 28535317 ~ 28540645 (-)
LOC110491788 LOC106579408 coding downstream 878293 28478779 ~ 28534177 (-)
si:ch211-180a12.2 LOC106579407 coding downstream 965799 28388779 ~ 28446671 (-)
eif3c LOC100286610 coding downstream 1043126 28298253 ~ 28369344 (-)
LOC110491798 LOC106578369 coding upstream 251164 29674817 ~ 29702593 (-)
LOC110492894 NA coding upstream 431524 29855177 ~ 29873630 (-)
LOC110492868 LOC106579432 coding upstream 531953 29955527 ~ 30543872 (-)
LOC110491806 LOC106579428 coding upstream 1500952 30924605 ~ 31019315 (-)
LOC110492870 ate1 coding upstream 1706464 31130117 ~ 31182991 (-)
G1360981 NA non-coding downstream 19170 29392297 ~ 29393300 (-)
G1360970 NA non-coding downstream 28856 29383410 ~ 29383614 (-)
G1360963 NA non-coding downstream 34145 29377892 ~ 29378325 (-)
G1360948 NA non-coding downstream 50120 29362149 ~ 29362350 (-)
G1360938 NA non-coding downstream 57444 29354809 ~ 29355026 (-)
G1361234 NA non-coding upstream 156 29423809 ~ 29424130 (-)
G1361271 NA non-coding upstream 38455 29462108 ~ 29462587 (-)
G1361278 NA non-coding upstream 56976 29480629 ~ 29480876 (-)
G1361287 NA non-coding upstream 71098 29494751 ~ 29495231 (-)
G1361288 NA non-coding upstream 72115 29495768 ~ 29496001 (-)
taok2b LOC106579406 other downstream 1231530 28177715 ~ 28237354 (-)
G1359763 NA other downstream 1248243 28163463 ~ 28164227 (-)
G1359412 NA other downstream 1884333 27527163 ~ 27528137 (-)
G1359321 NA other downstream 2052908 27357284 ~ 27359562 (-)
G1359119 NA other downstream 2299069 27111783 ~ 27113401 (-)
G1361290 NA other upstream 73460 29497113 ~ 29497555 (-)
G1361619 NA other upstream 500218 29923871 ~ 29925154 (-)
G1363836 NA other upstream 2215784 31639437 ~ 31650697 (-)
G1364105 NA other upstream 2462096 31885749 ~ 31886112 (-)
G1364348 NA other upstream 2595141 32018794 ~ 32019498 (-)

Expression


Co-expression Network