LOC110491797 (LOC106579418)


Basic Information

Item Value
gene id LOC110491797
gene name LOC106579418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29534042 ~ 29629011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036502.1
TCAGATTTCCTTCTACATACCCTTTCTTGATTCTAACCACACCTACCTAGCAGACGTGTCGCCGAATGTAACCACAACGAAACTGGATTTTCATACTCAATTCTGAACGCTCACGTCATGGCCAGTAATTTAGAAAAGGTTCAGACAAATGGATAATTTATCTGTTCATAGTTTTTCGGGAATAAAACAATAGGTATTTGAGATGAGCGATACGGAAGGAGAAGGCGGCGGCGAAATGTCAAAGACCGAGAAAGATCAGAGCTGGATACCCAAAATTATCAAGAAACGAGTGTGCACAACTTTCGTAGAGGATTCTTTCAGTAATGGCAGGCTGTGTCAGTGTGGGGGTACGCGGGACACCCATGAGTCAGTGGCTCTGGGGGACTATTTCAGCACAGCCATCGTCAGCCACTGGGACAGCTCCCAGCATTCCTCAGAGTACCCCACCGACGCCTTCGGAGAGCTGGAGTTCGCCGGTGCCAGCAAGAGACACAGCAAATTCCTGCGTCTCTCGTGGGACACCCCTCCTTCCATCGTCTACACCCTGATGATGGCCCACTGGGGGCTACCTCCGCCCAACCTGGTGGTGTCAGTGGTGAGCGGGGAGGGGAGAGCAAAGGTCAAGACGTGGGTACGGGAGGTCCTGAGGCAGGGATTGGTCAAAGCCTCCCAGAGCACAGGAGCGTGGATACTGACTGGAGGCCTGCGTGAGGGTGTAGGGAGGTGTGTAGGGGAAGCGGTAAGGGACCATGCCACCGCTGCCTCATCTGTCTCCCTGAACAAGGTGGTGGCTCTGGGCATCGCTCCATGGGGCCTGGTCCACAACCGCCAGCAGCTGGTCAATCCGCAGGGTAGCTTCCCTGCTAGGTACTACTTCCAGAACACGTCCCGTGACTCATGTTGCCTGGACAACAACTACCAGGCCTTTCTTCTGGTGGATGATGGGAGTGTAGGCCGCAGAGGGGGCGAGGCAAGCTTCAGGGCCCGGCTGGAGGATTATATTTCCCATCAGCGCACAGGCATCTGGGGCAGTGGAAGCATTGACATCCCCGTCCTGTGCATGCTGATATCAGGAGAGACAACCATGCTGGAGcgGTTGGATCTCTCTCTGAGGAACTCCATGCCCTGGCTGGTGCTGGCGGGGTCGGGTGGTGTGGCCGACCTCGTCAGTGACGTCCTGGAGAGCCTATCGTCTGCgccccctgtcctgtcctccaccGAGGGGGAGGGTGAGGCGGGACCTAGTGTGGACCTTAAAGACAGAGTGGCCGAGAGGGTTAGGAAGCACTTTCCGTCCGAAACAGAGATAGACAAACTGGTAGAACGGGTTCTGAGCATCTACCTGAACAGGGATCTGATCACTGTCTACCATGGAGAGCAGGAGGGACCAGATGACTTTGACACGGTCTTGCTCAAAGCCTTGGTTAGAGCGAGTAAGCAGCGTGTGTCAAGTGAAGCCAGCCCCTACACTGAGGAGCTGAAGCTGGCGGTTACCTGGAACAGAGTGGACATCGCCAAGAGTGAGCTCTTCAATGGAGACATCCACTGGAGGTACCAGGACTTGGAGGACTCCATGACGGACGCGTTGGTCAACGACAAGCCACAATTTGTGCGCCTCTTCACCGAGAACGGACTCAACATCCTAGACTACCTGACCTATGGGCGGCTGGAGAGCCTCTACCGCTCGGTGGCCGACAGCTCTCTAGCCTACGTCCTGCTGCAGCGCCGCCTAGGGGAGCGCCAGGGTATGACAGGCTCGCAGGCCATGCTGCCGGATGTCTCTCCCACCAAAGGGTCTGGTGGGCCGCCAGGGGGGCGGCGGCCTGCGAATAAGTTCAGTTTATTTGAGGTGTCGAGAGTCCTGGAGGACTTGATGGGGGATGTGTGTCAGCCATTTTACCACTCACCACTGGAACTGGAGAACATCTCCTCCCAGAGAAAGGCTCTCAGGCGTGTGAGTAAGCTGTTGCGGGGTGACTGTGTGTACCAGGACAGGCGCTGTCTCTTTCCCTGGGCTAGTCTCTTCGTCTGGGCTGTGCTGCAGAACCGCAAAGACATGGCCGTCTTCTTCTGGGAGATGGCAGGCGAGTCGGTCCTCAGTGCTCTGAGCGGCTGTAAGATCCTACGGGAGCTGTCCAAGctggagagcgagacggagaccAAGCTGGCCATGAAGGAGCTAGCGCAGAGGTTCGAGAACCTGGCTCACGATGTATTCAGTAAGTGTTACCAGAGCAGTGAGAGTCGCTCCTTCACCCTGCTGATCAGGAAGTCTCCCGTATGGGGAGGGACCACCTGTCTAAAGATGGGCATGGCCGCCGACGCCCGCCTCTTCTTCAGCCACGATGGagtacagTCTCTCCTGTCTCAGATCTGGTGGGGGGATATGAAGAGGAGCACGGAGGTGTGGAAACTCCTCCTCACCTTCTTCTGTCCCGTTCTGATGTACACCCAGCTCATCTCCTTCAGGGAATTGGAGGAGCCGGGGAAGCCTGATGAGGTTGCACAGGGTAGAGACAATGACAGCCTTTATGGAGAAACAATTTTCTCCTTCTCTGACATCAAGCACATTGAACATCATACACAGGGTCCTAATAGTCCCAGATATCATCTAAAAGGCACGCCCGACACCCTACCTAAACGGCCTTTTGTGGTATCCCGATGGCGGCAGTTTTGGTTCGCACCCGTCACTTCCTTTTTAGGCAACGTTCTGATGTACTTCCTGTTCCTTCTGCTGTTTGCCTACGTGCTATTGGTGGACTTTAAGCCGCCACCCCCGCGAGGCCCCGCTTTCGCCGAGTGTGTGTTGTACTTCTGGGTGTTCACCATCGTCTGTGAGGAGATCCGAGAGACGTTCTTAGTGGGCAGCATGATGTGGCGTCAGAGGATGAGGAAGTACATCCAGGACGTTTGGAACAAGTGTGACCTCACCGCCATCATACTCTTCATCATAGGCCTCACCTGCAGAATGTTCCAGTGGTCCTATGAGTTTGGCCGAGCAGTCCTGTGTGTGGACTACATGGTCTTCACACTTCATCTCATCCACATCTTCGCCATTCACAAACAACTGGGGCCAAAGATCATCATCGTCGGCAAGATGATGAAGGatatcttcttcttcctcttcttccttggTGTGTGGCTTATGGCATATGGGGTGGCCAATCAAGCACTGCTGTACTCCTATGACCCTCGCCCCGCCTGGATCTTCCGACGCGTGTTCTACAGGCCGTACCTGCACATATTTGGACAGGTCCCAGTGGAGGAAATAgatgtgagGAAGGAGTGGGACACGGAGTGCACTGACAATGTGACGCTGATCGAGGGAGGCGCGGAGCCCTGCAGGAGCCATTATGCTAACTGGCTAGTGATTGTCTTACTGGTCATCTACCTACTGGTCACCAACATCCTGCTCATCAACCTACTCATCGCCATGTTCAGTTACACATTCTCCAAGGTGCAGGGCCAAAGCGACACCTACTGGAAGTTCCAGCGCTACAACCTGATTGTGGAGTACCACTCCCGGCCCTCCCTTGCTCCCCCCTTCATTATCCTCTCCCACGTTCACCTATTTATCAAGAGATACATCCGCAAGGTACCCTCGGTCAAGATCCTCCATTTTGGTGAGAATTTAACCCAGTATTGGAACTGACGGGGAAAGCAGCTAACAGGTTAATGACATGGGAGGCCATTCAGAAGGAAAACTTCCTGACAGCCCAGAGCAagatccagagagggagcgaCTCAGAGAGGCTCAAACGGATGTCAGTCAAGGTGGACAGTGTGCTGAAACAGATGGCTGAGACAAGGGATCATGATCGCAGACTGAGGGCTCTGGAATCGGAG
>XM_021565561.2
TCAGATTTCCTTCTACATACCCTTTCTTGATTCTAACCACACCTACCTAGCAGACGTGTCGCCGAATGTAACCACAACGAAACTGGATTTTCATACTCAATTCTGAACGCTCACGTCATGGCCAGTAATTTAGAAAAGGTTCAGACAAATGGATAATTTATCTGTTCATAGTTTTTCGGGAATAAAACAATAGGTATTTGAGATGAGCGATACGGAAGGAGAAGGCGGCGGCGAAATGTCAAAGACCGAGAAAGATCAGAGCTGGATACCCAAAATTATCAAGAAACGAGTGTGCACAACTTTCGTAGAGGATTCTTTCAGTAATGGCAGGCTGTGTCAGTGTGGGGGTACGCGGGACACCCATGAGTCAGTGGCTCTGGGGGACTATTTCAGCACAGCCATCGTCAGCCACTGGGACAGCTCCCAGCATTCCTCAGAGTACCCCACCGACGCCTTCGGAGAGCTGGAGTTCGCCGGTGCCAGCAAGAGACACAGCAAATTCCTGCGTCTCTCGTGGGACACCCCTCCTTCCATCGTCTACACCCTGATGATGGCCCACTGGGGGCTACCTCCGCCCAACCTGGTGGTGTCAGTGGTGAGCGGGGAGGGGAGAGCAAAGGTCAAGACGTGGGTACGGGAGGTCCTGAGGCAGGGATTGGTCAAAGCCTCCCAGAGCACAGGAGCGTGGATACTGACTGGAGGCCTGCGTGAGGGTGTAGGGAGGTGTGTAGGGGAAGCGGTAAGGGACCATGCCACCGCTGCCTCATCTGTCTCCCTGAACAAGGTGGTGGCTCTGGGCATCGCTCCATGGGGCCTGGTCCACAACCGCCAGCAGCTGGTCAATCCGCAGGGTAGCTTCCCTGCTAGGTACTACTTCCAGAACACGTCCCGTGACTCATGTTGCCTGGACAACAACTACCAGGCCTTTCTTCTGGTGGATGATGGGAGTGTAGGCCGCAGAGGGGGCGAGGCAAGCTTCAGGGCCCGGCTGGAGGATTATATTTCCCATCAGCGCACAGGCATCTGGGGCAGTGGAAGCATTGACATCCCCGTCCTGTGCATGCTGATATCAGGAGAGACAACCATGCTGGAGcgGTTGGATCTCTCTCTGAGGAACTCCATGCCCTGGCTGGTGCTGGCGGGGTCGGGTGGTGTGGCCGACCTCGTCAGTGACGTCCTGGAGAGCCTATCGTCTGCgccccctgtcctgtcctccaccGAGGGGGAGGGTGAGGCGGGACCTAGTGTGGACCTTAAAGACAGAGTGGCCGAGAGGGTTAGGAAGCACTTTCCGTCCGAAACAGAGATAGACAAACTGGTAGAACGGGTTCTGAGCATCTACCTGAACAGGGATCTGATCACTGTCTACCATGGAGAGCAGGAGGGACCAGATGACTTTGACACGGTCTTGCTCAAAGCCTTGGTTAGAGCGAGTAAGCAGCGTGTGTCAAGTGAAGCCAGCCCCTACACTGAGGAGCTGAAGCTGGCGGTTACCTGGAACAGAGTGGACATCGCCAAGAGTGAGCTCTTCAATGGAGACATCCACTGGAGGTACCAGGACTTGGAGGACTCCATGACGGACGCGTTGGTCAACGACAAGCCACAATTTGTGCGCCTCTTCACCGAGAACGGACTCAACATCCTAGACTACCTGACCTATGGGCGGCTGGAGAGCCTCTACCGCTCGGTGGCCGACAGCTCTCTAGCCTACGTCCTGCTGCAGCGCCGCCTAGGGGAGCGCCAGGGTATGACAGGCTCGCAGGCCATGCTGCCGGATGTCTCTCCCACCAAAGGGTCTGGTGGGCCGCCAGGGGGGCGGCGGCCTGCGAATAAGTTCAGTTTATTTGAGGTGTCGAGAGTCCTGGAGGACTTGATGGGGGATGTGTGTCAGCCATTTTACCACTCACCACTGGAACTGGAGAACATCTCCTCCCAGAGAAAGGCTCTCAGGCGTGTGAGTAAGCTGTTGCGGGGTGACTGTGTGTACCAGGACAGGCGCTGTCTCTTTCCCTGGGCTAGTCTCTTCGTCTGGGCTGTGCTGCAGAACCGCAAAGACATGGCCGTCTTCTTCTGGGAGATGGCAGGCGAGTCGGTCCTCAGTGCTCTGAGCGGCTGTAAGATCCTACGGGAGCTGTCCAAGctggagagcgagacggagaccAAGCTGGCCATGAAGGAGCTAGCGCAGAGGTTCGAGAACCTGGCTCACGATGTATTCAGTAAGTGTTACCAGAGCAGTGAGAGTCGCTCCTTCACCCTGCTGATCAGGAAGTCTCCCGTATGGGGAGGGACCACCTGTCTAAAGATGGGCATGGCCGCCGACGCCCGCCTCTTCTTCAGCCACGATGGagtacagTCTCTCCTGTCTCAGATCTGGTGGGGGGATATGAAGAGGAGCACGGAGGTGTGGAAACTCCTCCTCACCTTCTTCTGTCCCGTTCTGATGTACACCCAGCTCATCTCCTTCAGGGAATTGGAGGAGCCGGGGAAGCCTGATGAGGTTGCACAGGGTAGAGACAATGACAGCCTTTATGGAGAAACAATTTTCTCCTTCTCTGACATCAAGCACATTGAACATCATACACAGGGTCCTAATAGTCCCAGATATCATCTAAAAGGCACGCCCGACACCCTACCTAAACGGCCTTTTGTGGTATCCCGATGGCGGCAGTTTTGGTTCGCACCCGTCACTTCCTTTTTAGGCAACGTTCTGATGTACTTCCTGTTCCTTCTGCTGTTTGCCTACGTGCTATTGGTGGACTTTAAGCCGCCACCCCCGCGAGGCCCCGCTTTCGCCGAGTGTGTGTTGTACTTCTGGGTGTTCACCATCGTCTGTGAGGAGATCCGAGAGACGTTCTTAGTGGGCAGCATGATGTGGCGTCAGAGGATGAGGAAGTACATCCAGGACGTTTGGAACAAGTGTGACCTCACCGCCATCATACTCTTCATCATAGGCCTCACCTGCAGAATGTTCCAGTGGTCCTATGAGTTTGGCCGAGCAGTCCTGTGTGTGGACTACATGGTCTTCACACTTCATCTCATCCACATCTTCGCCATTCACAAACAACTGGGGCCAAAGATCATCATCGTCGGCAAGATGATGAAGGatatcttcttcttcctcttcttccttggTGTGTGGCTTATGGCATATGGGGTGGCCAATCAAGCACTGCTGTACTCCTATGACCCTCGCCCCGCCTGGATCTTCCGACGCGTGTTCTACAGGCCGTACCTGCACATATTTGGACAGGTCCCAGTGGAGGAAATAgatgtgagGAAGGAGTGGGACACGGAGTGCACTGACAATGTGACGCTGATCGAGGGAGGCGCGGAGCCCTGCAGGAGCCATTATGCTAACTGGCTAGTGATTGTCTTACTGGTCATCTACCTACTGGTCACCAACATCCTGCTCATCAACCTACTCATCGCCATGTTCAGTTACACATTCTCCAAGGTGCAGGGCCAAAGCGACACCTACTGGAAGTTCCAGCGCTACAACCTGATTGTGGAGTACCACTCCCGGCCCTCCCTTGCTCCCCCCTTCATTATCCTCTCCCACGTTCACCTATTTATCAAGAGATACATCCGCAAGGTACCCTCGGTCAAGATCCTCCATTTTGTATTGGAACTGACGGGGAAAGCAGCTAACAGGTTAATGACATGGGAGGCCATTCAGAAGGAAAACTTCCTGACAGCCCAGAGCAagatccagagagggagcgaCTCAGAGAGGCTCAAACGGATGTCAGTCAAGGTGGACAGTGTGCTGAAACAGATGGCTGAGACAAGGGATCATGATCGCAGACTGAGGGCTCTGGAATCGGAGTTGGAGTATTGCTCCAGTGCACTCAGCTGGATAATGGAAGCACTCTCACAGAGCAACATGGTCAAACCCACTCGACCACCGCCAACACTTAGAGAGCCATTCCCTGCCCCCTCCTCTTCCATCTGATCCTGTCTTTGTTTACATGCCAAGCCATTCAGGGTCACTAAAAGGAAAAGTTGAAACGCTGTTTCTTTCCACTTCGGCTGCTTCTTTATCAACAAGGGACCACTGCTGCCAATTGTTTTTGTTGGCATTTTAAATTGTCTTTATTCGTTAAGGTTGTGTATTTCATTTTTAAAAGTTTCCTGAAAGACAACAGTTGGAACCAGGGGAAAGGGCTGTTGAAGAACTGTTTTTTTATGAgggctatgttttttttaaaggggtAATGTGATATA

Function

NR:

description
transient receptor potential cation channel subfamily M member 4-like

GO: NA

KEGG:

id description
K04979 TRPM4; transient receptor potential cation channel subfamily M member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036502.1 False 3846 mRNA 0.55 25 29534042 29617028
XM_021565561.2 True 4227 mRNA 0.54 27 29534042 29629011

Neighbor

gene id symbol gene type direction distance location
LOC110491796 NA coding upstream 22433 29503409 ~ 29511609 (+)
irf3 irf-3 coding upstream 41140 29481644 ~ 29492902 (+)
LOC110491795 LOC106579416 coding upstream 53928 29424341 ~ 29480114 (+)
nrg3b LOC106579414 coding upstream 180582 28924817 ~ 29353460 (+)
si:ch211-214e3.5 LOC106579413 coding upstream 676241 28833364 ~ 28857801 (+)
LOC110491799 LOC106578370 coding downstream 85267 29714278 ~ 29727319 (+)
LOC110491800 LOC106579437 coding downstream 147429 29776440 ~ 29779141 (+)
LOC110491801 if3ei coding downstream 278281 29907292 ~ 29925164 (+)
LOC110491802 cssa19h10orf105 coding downstream 513418 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 970383 30599394 ~ 30658325 (+)
G1361033 NA non-coding upstream 18348 29515452 ~ 29515694 (+)
G1360998 NA non-coding upstream 125236 29408548 ~ 29408806 (+)
G1360978 NA non-coding upstream 144444 29389311 ~ 29389598 (+)
G1360967 NA non-coding upstream 152200 29381638 ~ 29381842 (+)
G1360950 NA non-coding upstream 165959 29367836 ~ 29368083 (+)
G1361046 NA non-coding downstream 137 29629148 ~ 29650224 (+)
G1361114 NA non-coding downstream 27450 29656461 ~ 29656668 (+)
G1361155 NA non-coding downstream 111740 29740751 ~ 29741079 (+)
G1361517 NA non-coding downstream 196502 29825513 ~ 29825718 (+)
G1361524 NA non-coding downstream 199559 29828570 ~ 29828796 (+)
G1358698 kif22 other upstream 1486652 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 1588201 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 1956950 27561141 ~ 27595350 (+)
G1358292 NA other upstream 2201767 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 3219241 26283071 ~ 26314809 (+)
G1361207 NA other downstream 173643 29802654 ~ 29804368 (+)
G1361671 NA other downstream 314430 29943441 ~ 29943756 (+)
LOC110492869 LOC106599969 other downstream 1074636 30700999 ~ 30704172 (+)
G1362902 fgfr2 other downstream 1325598 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1605482 31234493 ~ 31235386 (+)

Expression


Co-expression Network