LOC110491799 (LOC106578370)


Basic Information

Item Value
gene id LOC110491799
gene name LOC106578370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29714278 ~ 29727319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565564.2
CTTTGTTGATGGTCCCTAAATATTAGCTTTCACGTCAAATCCGAACCCAGTTTCATAATCCAACGGAATCGGTCAAATAAAACCTGTGCAATGCTGTACACCTTTTTTCTTTCATAAAGAGCCTAACCTGAGTTATGTAGGTCAAGTCGTTTGCGAGCTGTTGAAGTTTAAACGTCCGAATGTCTGGCCAACATCGAATCTCAAACCAATTTTACCACGGTGCCACACCTTGGCAAAACCAGCGCAGCgcagaaaaaaaacaaacaatatcaCAGTGGATTATGACAATTTCGGATGTATTTTGTGTGATAATAAATAGGGACGTCTCTGCGCAGCCTATCGGATTCCAGGATGAAATATGCATCCAGATGAAAAGACTGCAGTCCTTTCGCTAATCCTTGTCTATCCTTCTTATCTCGGGACTCATAGCAGTCTGATCGCTATGGGACAGCGAAGCCGTGGGACAAAACCGTGCAAATGATATTTCAGTAAATGACAAACGCAGGTCTGTTTGGCTTCAGTGGGTGCTGACTGGGTGCATGCAGGCTAGCTGTTCAGTGCACGCATAAAAGTGGGCCAAAATGTTCCTCGCATTCGTCTTGGGACTCTACCTGGCGACAGGTGCGCTACCCCCCTCGGTGAGCGCGTGCCCGTCACAGTGTAGCTGTTTTTTTCACAACCTAAGTGATGGATCTATGGCCAGGAGTGTAATTTGCAATGACCCCGAGATCTCCATTGTGCCTGCCAGTTTCCCCGTGGACACGTCCAAGCTGCGAATCGAGAAAACAGCCATCCATCGTATCCCGAGCGAAGCCTTCAGTTACCTCCCCAATCTGGAGTTCCTCTGGATGTCCTTCAATGTGCTGTCCTCTCTCAAGCCGGACAGTTTCCGTGGGATGTTAAATCTGGAGGAGCTGCGACTGGATGGGAATGCCCTCACCGCGTTCCCCTGGGAGTCTCTTATGGATATGTCCAGCCTCACGCTGCTCGACTTGCACAACAACCAGTTGACCTCAGTTCCCGCAGACGCcacaatttatttaaaaaacCTGACCTACCTGGATCTGTCCAGCAACAACCTTCTGACTGTTCCGGCTGAGGTGCTCGCCACCTGGCTAACAGTTAAACCTGTGCAGGGCCCAGAGAACTCCAAAATGATACTTGGTCTCCATGACAACCCCTGGCTGTGTGACTGCCGCCTGTATGACCTGGTCCAGTTCCAGAAGTTGCCAACGTTCTCTGTGGCATTAATCGACACACGCCTCCGCTGTGCAGCTCCCGAGAGCCtgtcaggtgttctgttcagCGATGCCGAGCTGCGGAGGTGCCAGGCGCCACGCGTCCACACAGCGGTGGCACACGTCCGCAGCGCGGTAGGAAACAACGTGCTGCTGCGCTGCGGGACCATTGGCGTTCCCAGCCCGGATCTGGCCTGGCGCAGGGCGGAAGGGAAAGCCCTGAACGGGACAGTCCAGCAGGAGAACTCCAAGGAAGGCATTATCTGGTCCATCCTCAGTGTCCCAGCCGTGTCCTACCGTGACTCAGGGAAGTATGTCTGCAAGGCCACTAACTACGCCGGAAATGCAGAGACCATCATCTCCCTGGTTGTCTCTGACGCTCCCCCAAAACCCGACAATAACAACAACCAAACCAGCGTGGTTGCTgctactgtaaaaaaaaacaaagtcAACAAACCCAACGGGATGGGGAAGGCAGCATACCAGGAGAAACTGGTGGATAGGTTAGTGGTTCCCACCCCCAACCCTCAACCCCCACCTGCTGTTGTGGACTCCAGCCCTGAGCCTGAAGGTGTGGTAGTGGGAAGTGTGGCAGATAGAGCCACCCCTGGACCAGCCAAGTTGCCCAGTCCAGACGGACTCCTGGAGCTGGAGAAGACCAACCTGAGCAACCTGGCCCAGGCCCAGTATGACCCGGACCGGATAGTTCGCTCGGTCAAGGTGTTGGGCGATACGGAGAACACCATCACCCTGAACTGGCGGGCGCCCAAGGCCAAGAACACCACAGCCTTCAGTGTGCTCTATGCCGTCTTCGGCGAAAGAGACATGCGCAAGATCAACGTGGCAGCGGGTCAGAATCGGGTCTTCATCGAGGGCCTGGTGCCCAAGACTAAGTACATTGCCTGCGTGTGTGTCCGGGGCCTGATCCCCAAGAAGGAGCAGTGTGTCATCTTCTCCACCGACGAGGCGGCCAGTGCCGCTGGGACCCAGAAGCTCATCAACGTCATCGTGATTACCGTGGCTTGTGTCATTGCTGTGCCACTCACCGTAATTGTCTGCTGTGGTGCGCTCAAGAGGCGCATCCAGAAGATTTGGGGCAAGAAGTCCAAGGACATCCAGGACTCGTATGTGACTTTTGAGACGCTGTCCCCCGGAACCAAGGCTAAAGGGTTGGAGGGTGAGTACCTGACCAGACTCAACCCTGAGGAGTCCAACCGGCTGCTGTCGGCCCGATCCAGTTTGGACTCTGAGGCCACGGCAAAGATAGAGGGTCAGCCCAACGAGTACTTCTGCTGACTTCATGCTCCAGCTCCTTCCCCATGCCATCTCCCACACTTGCACCCTCTGGCTCAACacatctccacacacacaacTCCTCTACAGCATagccccagacacacacatcatccccATCATagccccagacacacacataatCCCCATCatagccccacacacacacatcatccccatcatagcc

Function

NR:

description
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565564.2 True 2718 mRNA 0.54 4 29714278 29727319

Neighbor

gene id symbol gene type direction distance location
LOC110491797 LOC106579418 coding upstream 85267 29534042 ~ 29629011 (+)
LOC110491796 NA coding upstream 202669 29503409 ~ 29511609 (+)
irf3 irf-3 coding upstream 221376 29481644 ~ 29492902 (+)
LOC110491795 LOC106579416 coding upstream 234164 29424341 ~ 29480114 (+)
nrg3b LOC106579414 coding upstream 360818 28924817 ~ 29353460 (+)
LOC110491800 LOC106579437 coding downstream 49121 29776440 ~ 29779141 (+)
LOC110491801 if3ei coding downstream 179973 29907292 ~ 29925164 (+)
LOC110491802 cssa19h10orf105 coding downstream 415110 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 872075 30599394 ~ 30658325 (+)
LOC110492869 LOC106599969 coding downstream 973680 30700999 ~ 30704172 (+)
G1361114 NA non-coding upstream 57610 29656461 ~ 29656668 (+)
G1361046 NA non-coding upstream 64054 29629148 ~ 29650224 (+)
G1361033 NA non-coding upstream 198584 29515452 ~ 29515694 (+)
G1360998 NA non-coding upstream 305472 29408548 ~ 29408806 (+)
G1360978 NA non-coding upstream 324680 29389311 ~ 29389598 (+)
G1361155 NA non-coding downstream 13432 29740751 ~ 29741079 (+)
G1361517 NA non-coding downstream 98194 29825513 ~ 29825718 (+)
G1361524 NA non-coding downstream 101251 29828570 ~ 29828796 (+)
G1361529 NA non-coding downstream 105641 29832960 ~ 29833175 (+)
G1361592 NA non-coding downstream 212835 29940154 ~ 29940377 (+)
G1358698 kif22 other upstream 1666888 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 1768437 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 2137186 27561141 ~ 27595350 (+)
G1358292 NA other upstream 2382003 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 3399477 26283071 ~ 26314809 (+)
G1361207 NA other downstream 75335 29802654 ~ 29804368 (+)
G1361671 NA other downstream 216122 29943441 ~ 29943756 (+)
G1362902 fgfr2 other downstream 1227290 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1507174 31234493 ~ 31235386 (+)

Expression


Co-expression Network