LOC110491800 (LOC106579437)


Basic Information

Item Value
gene id LOC110491800
gene name LOC106579437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29776440 ~ 29779141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565565.2
gggagggtTACTTTTTTCAAGCGTTccggtaaaatatatttttttctgaagGGAGGGCcgtccattttcatttcagagaggtccgattttctctatgtaacccatATTATAAATAACGTTCACTTCCTTATTGGAATTCCAATTATTGGGTAAAGACGTCATGTGCTTAAAATGGCAAACGTTTCACTTTTAAAACATTAGGGTACTTTTCAATTAATCGATTATTTTTTGTCATATGAAAGTTCGAAATGTTAACCTAACAGTGGATATTGTATTGAACATACATTGcataaaatacatacagtacatcaaagGTCACTTGGAAACGAATATAGCCCACATCTAAAAAGATAACTCCTTGTTCAAATGTTTCCAAACACATTGTTCAAATGTTGTCCATTGATTAGCTCTCCTGACTTTTTGAAACCGTCCATACAATTCAAATTATACAAGCACACACTGTCCTTTGATTGAAGGGTGGGCCTATATCAAACCAATATTATTTTTCCGTGAAGTAACTGGTTGCAGAGTGTTATTGGGCACGGGCTTGCCATGTGTTAAATTATCATAAAATAATGTCCCATCTGTGGAAACACTGAAAGGCAAACAAGGATTGCATATATTTTGGAAATGACGGGGTAGGGGGACACTGAAGGGGTCTAGGTGATGTGAGATGATGACATACAGGTGGCTGCAGATGTGAGAGCAGATGGTTCTCACGAAGTAGTGTTACTAGTAACACTAGTAACAGTTTGCGAGTGAGCTGCAGGTGAATCTCTAACCTGTGAGAGTTTGTCTGTCGCCAGCGCGTCACCTGAATGACGGGGTATGAGACAATGAAACCACAATGGAAGACAGGATAAAACTCGTCCAGGTCACGAGAGAGGAAATACGAGCGCAATTACGGACTGTGCCACCAGGGAAAGGTAAAGACCGGAAAGCTGGACAtatgttcagactgctgctgaaTAAGTAAATTGAATGAGTGAACCTGACAAGACCAAAACACATGAACAAAGAGCTCCTGAACTGAGACGCGCACATTTCAGTCGGTGGAAAGAGTTTATTTTTCGTTTTGGAAGAGAGAAGCCAGCAGAAAACGTAAAGAATCATGGATACAAAGGGAATCACAGAGGACCACGGAGCCGCCCACGGAGCCGGGGATCTAGCGCAATCTGCTGCTATGAAACTGTCTGAGATAGGCGAAAGAACTAAACAACTAGGTACTAAATTCAAAGACCCTGAGCGACAGAGACGGATTATTCTAGTGATTGTCTGTGTAGCACTTCTATTAGATAACATGCTTTACATGGTAATTGTGCCGATCATACCAGACTATTTGGCAGAATTACAAAGTGAGGCAGATCACGCTTCGTTTAATGCACGAGTAAAAAACGCCGGGAATTCCTCGAATCATACTATCTTTAAAGCCACCAAAGGCAACTTCGACCTGCAGATTGGTGTACTTTTTGCGTCCAAAGCCATATTGCAGCTTTTGGTCAACCCGTTGACCGGGACGTTCATTGACCGGGTCGGTTATGACCTTCCTCTGTTCATCGGACTCATCATCATGTTTTTTTCCACATGTCTATTCGCCTTCGCCGATAATTACGTGTCTCTGTTCGCGGCGAGGAGCTTGCAGGGCTTAGGCTCAGCGTTCGCAGATACATCAGGCATCGCCATGATAGCGGATAAGTACACGGAGGAGGCGGAGAGGAGCAGAGCCCTGGGTATCGCCCTGGCATTCATCTCTTTCGGCAGCTTAGTGGCGCCTCCCTTCGGGGGCATCCTGTACGAATTCTGTGGGAAACGGGTGCCCTTCATTGTGCTGGCCTGCATCTGTTTCACGGACGGCATGCTGTGCCTGACCGTGTTAAAGCCCTTctccagaggggagagagagaacatgccCGTGGGCACCCCCATCTACAAACTGATGATCGACCCCTACATAGCTGTGGTGGCGGGTGCCCTGACCACCTGTAACATCCCGCTGGCCTTCCTGGAGCCCACCATCGCAAACTGGATGGAAGAAACCATGCACTCTTCCCAATGGGAGATCGGCCTTGCCTGGCTTCCCGCGTTCTTCCCGCATGTCCTGGGTGTGTACATCACCGTCAAACTCGCGGCTAAGTACCCACACCTGCAGTGGTTCTACGGGGCACTGGGCATGGTGATAATCGGCGCCAGTTCGTGCACCGTGCCAGCCTGTAAGACCTTTGGCCAGCTGATGGGTCCACTGTGTGGCATCTGCTTTGGCATCGCCCTGGTGGACACGGCGCTACTGCCTACACTCGCTTTCCTGGTGGACGTGCGGCATGTGTCGGTGTACGGCAGTGTGTACGCCATCGCGGACATCTCCTACTGCGTGGCATACGCCCTGGGCCCTGTGGTGGCCGGACAGATAGTCCACGACCTGGGCTTCATTCAGCTCAACCTGGGCATGGGTCTCGCCAATGTGCTTTACGCACCAGCGCTCCTCTTACTAAAGAACGTGTGCCAAATGAAACCTTCAAACTCGGAGAGAGGCATGCTACTGGAGGAAGGCCCCACGGGTCTCTACGACACAATAAAAACTCAGGAACgcgagaggaagaggaaggggttAAGTAATGTTGTTGATGAGAATGGCATAGCCAAGTATTCTGAAGAGGAGTCATTTGAGTATGcgtaaactgtaaaaaaaaaaaaaataataataa

Function

NR:

description
probable vesicular acetylcholine transporter-A

GO: NA

KEGG:

id description
K14636 SLC18A3, VACHT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565565.2 True 2702 mRNA 0.47 1 29776440 29779141

Neighbor

gene id symbol gene type direction distance location
LOC110491799 LOC106578370 coding upstream 49121 29714278 ~ 29727319 (+)
LOC110491797 LOC106579418 coding upstream 147429 29534042 ~ 29629011 (+)
LOC110491796 NA coding upstream 264831 29503409 ~ 29511609 (+)
irf3 irf-3 coding upstream 283538 29481644 ~ 29492902 (+)
LOC110491795 LOC106579416 coding upstream 296326 29424341 ~ 29480114 (+)
LOC110491801 if3ei coding downstream 128151 29907292 ~ 29925164 (+)
LOC110491802 cssa19h10orf105 coding downstream 363288 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 820253 30599394 ~ 30658325 (+)
LOC110492869 LOC106599969 coding downstream 921858 30700999 ~ 30704172 (+)
LOC110492895 NA coding downstream 928882 30708023 ~ 30708936 (+)
G1361155 NA non-coding upstream 35361 29740751 ~ 29741079 (+)
G1361114 NA non-coding upstream 119772 29656461 ~ 29656668 (+)
G1361046 NA non-coding upstream 126216 29629148 ~ 29650224 (+)
G1361033 NA non-coding upstream 260746 29515452 ~ 29515694 (+)
G1360998 NA non-coding upstream 367634 29408548 ~ 29408806 (+)
G1361517 NA non-coding downstream 46372 29825513 ~ 29825718 (+)
G1361524 NA non-coding downstream 49429 29828570 ~ 29828796 (+)
G1361529 NA non-coding downstream 53819 29832960 ~ 29833175 (+)
G1361592 NA non-coding downstream 161013 29940154 ~ 29940377 (+)
G1361667 NA non-coding downstream 161982 29941123 ~ 29941688 (+)
G1358698 kif22 other upstream 1729050 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 1830599 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 2199348 27561141 ~ 27595350 (+)
G1358292 NA other upstream 2444165 27329311 ~ 27332275 (+)
mpp3b LOC106579097 other upstream 3461639 26283071 ~ 26314809 (+)
G1361207 NA other downstream 23513 29802654 ~ 29804368 (+)
G1361671 NA other downstream 164300 29943441 ~ 29943756 (+)
G1362902 fgfr2 other downstream 1175468 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1455352 31234493 ~ 31235386 (+)

Expression


Co-expression Network