LOC110492894


Basic Information

Item Value
gene id LOC110492894
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29855177 ~ 29873630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469089.2
aattttgtctcgCATcctagataaaaaaaaacatcacccaggtaggccagtcatgtgagaaactcgtcgTCAGACAAGGGAAAATTGTGTGTCCAAAACGGCTTTCAAGCTGTCAGTCATTCCCTTAGCAGCAAGAGCTTCTCGTGGATGCTGcggtgtacccaagtggcgtcgggagcaactgcttgcatgcgctgttggggaataatcagaattggttggtaacatagAATCGTTACACGAACTATGGACTCAGCTGTGTCTAGACTCTCTGCAACTACCTCTACACAAGAGATCTCCTAAAAGACTAAAATattattcGAAAGTGTCTTCGTCGAGGACAACTGAAGACTGCTGTGCTACTTCCGAAGAGTGATACAGTCCACCCGGTCCTGGGTTACCTCCAGACAAGTCCCCTGAAGCCTGTGTGTgtcgtagagcaaaacaaccgacaCCTTCGTGTTCATGAGAATCTCTCCTTTCAAGTCTAtccagtgtgcaaagctgccatcaagacaaattgctactttgaagaatctcaaatgtaaaatatactttgatttgtttgatatgtTCATGCCAGTAAATTTCAGCAAGTAGCAATGTGAACGtgtttgtgtgcatttgtgtgttgcAGGGGATTTGGAATAAGACagtggagacaggagacagagtaGGCTACGATTatatattaaatatttttttcttacatTTAGTTATGTTTAGGGCTGTTGGTAGGCCTCAGTCTGGAATGGCTCTTTGATGTTGTTGACACAATGCGTCAATAATGAAGGGGCCTGTGCTTTTACTGGTTGGCTCTCATGTCTTTCTCACTCAAACACCCACATGCAGAGCCACACTCAGAAGGGGTAGGCGCTCGGGAGCTATTACATTGGGGCTCCCAAGAGGCGCAGTGgactaagacactgcatctcactTTAAGAGGCACCACTgtagtacctggtttgaatccagactgtatcacatccagccatgattgggagtcccatagagtggcacacaa
>XR_005036503.1
CTCATCCCTCTTCCTTCCTCCtatcctactctctcctccctctctcttccctcttctctccctcccttactgCTCAGGCGTTTAACCATGGAGGACTTATGCCGTATTCATGACATGTTGGAAACTTGTAAAAATACAACCTTCAATCTCGTAATTACAAGTGGGAAACTCTGGAATCATCCCTGCGCTCCGACATTTGGGAAGAGAATCGTTACACGAACTATGGACTCAGCTGTGTCTAGACTCTCTGCAACTACCTCTACACAAGAGATCTCCTAAAAGACTAAAATattattcGAAAGTGTCTTCGTCGAGGACAACTGAAGACTGCTGTGCTACTTCCGAAGAGTGATACAGTCCACCCGGTCCTGGGTTACCTCCAGACAAGTCCCCTGAAGCCTGTGTGTgtcgtagagcaaaacaaccgacaCCTTCGTGTTCATGAGAATCTCTCCTTTCAAGTCTAtccagtgtgcaaagctgccatcaagacaaattgctactttgaagaatctcaaatgtaaaatatactttgatttgtttgatatgtTCATGCCAGTAAATTTCAGCAAGTAGCAATGTGAACGtgtttgtgtgcatttgtgtgttgcAGGGGATTTGGAATAAGACagtggagacaggagacagagtaGGCTACGATTatatattaaatatttttttcttacatTTAGTTATGTTTAGGGCTGTTGGTAGGCCTCAGTCTGGAATGGCTCTTTGATGTTGTTGACACAATGCGTCAATAATGAAGGGGCCTGTGCTTTTACTGGTTGGCTCTCATGTCTTTCTCACTCAAACACCCACATGCAGAGCCACACTCAGAAGGGGTAGGCGCTCGGGAGCTATTACATTGGGGCTCCCAAGAGGCGCAGTGgactaagacactgcatctcactTTAAGAGGCACCACTgtagtacctggtttgaatccagactgtatcacatccagccatgattgggagtcccatagagtggcacacaa
>TU1556151
GCGATGTGTTTTTTCTTCCCTCGTTCCTTTTCCCTCCTTCACTGCTCACTCATCCCTCTTCCTTCCTCCtatcctactctctcctccctctctcttccctcttctctccctcccttactgCTCAGGCGTTTAACCATGGAGGACTTATGCCGTATTCATGACATGTTGGAAACTTGTAAAAATACAACCTTCAATCTCGTAATTACAAGTGGGAAACTCTGGAATCATCCCTGCGCTCCGACATTTGGGAAGAGattattcGAAAGTGTCTTCGTCGAGGACAACTGAAGACTGCTGTGCTACTTCCGAAGAGTGATACAGTCCACCCGGTCCTGGGTTACCTCCAGACAAGTCCCCTGAAGCCTGTGTGTgtcgtagagcaaaacaaccgacaCCTTCGTGTTCATGAGAATCTCTCCTTTCAAGTCTAtccagtgtgcaaagctgccatcaagacaaattgctactttgaagaatctcaaatgtaaaatatactttgatttgtttgatatgtTCATGCCAGTAAATTTCAGCAAGTAGCAATGTGAACGtgtttgtgtgcatttgtgtgttgcAGGGGATTTGGAATAAGACagtggagacaggagacagagtaGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469089.2 False 1024 mRNA 0.45 5 29855177 29863073
XR_005036503.1 False 1000 mRNA 0.45 4 29855177 29873582
TU1556151 True 619 lncRNA 0.45 3 29855522 29873630

Neighbor

gene id symbol gene type direction distance location
LOC110491798 LOC106578369 coding downstream 152584 29674817 ~ 29702593 (-)
LOC110491794 NA coding downstream 431524 29412470 ~ 29423653 (-)
afap1l2 afap1l2 coding downstream 1088175 28626132 ~ 28767002 (-)
LOC110491790 LOC100194624 coding downstream 1314532 28535317 ~ 28540645 (-)
LOC110491788 LOC106579408 coding downstream 1321000 28478779 ~ 28534177 (-)
LOC110492868 LOC106579432 coding upstream 82024 29955527 ~ 30543872 (-)
LOC110491806 LOC106579428 coding upstream 1051023 30924605 ~ 31019315 (-)
LOC110492870 ate1 coding upstream 1256535 31130117 ~ 31182991 (-)
LOC110491809 p5cs coding upstream 1397027 31270609 ~ 31285633 (-)
LOC110491810 LOC106579441 coding upstream 1431501 31305083 ~ 31307541 (-)
G1361508 NA non-coding downstream 35574 29819347 ~ 29819603 (-)
G1361468 NA non-coding downstream 36320 29755523 ~ 29818857 (-)
G1361458 NA non-coding downstream 114211 29740727 ~ 29740966 (-)
G1361433 NA non-coding downstream 123902 29697398 ~ 29731275 (-)
G1361403 NA non-coding downstream 194028 29660930 ~ 29661149 (-)
G1361645 NA non-coding upstream 30299 29903881 ~ 29904104 (-)
G1361620 if3ei non-coding upstream 33763 29907345 ~ 29908547 (-)
G1361657 NA non-coding upstream 54290 29927872 ~ 29928175 (-)
G1361658 NA non-coding upstream 56263 29929845 ~ 29930045 (-)
G1361665 NA non-coding upstream 63732 29937314 ~ 29937929 (-)
G1361290 NA other downstream 357622 29497113 ~ 29497555 (-)
taok2b LOC106579406 other downstream 1674237 28177715 ~ 28237354 (-)
G1359763 NA other downstream 1690950 28163463 ~ 28164227 (-)
G1359412 NA other downstream 2327040 27527163 ~ 27528137 (-)
G1359321 NA other downstream 2495615 27357284 ~ 27359562 (-)
G1361619 NA other upstream 50289 29923871 ~ 29925154 (-)
G1363836 NA other upstream 1765855 31639437 ~ 31650697 (-)
G1364105 NA other upstream 2012167 31885749 ~ 31886112 (-)
G1364348 NA other upstream 2145212 32018794 ~ 32019498 (-)
G1365099 NA other upstream 2760883 32634465 ~ 32635511 (-)

Expression


Co-expression Network