LOC110491801 (if3ei)


Basic Information

Item Value
gene id LOC110491801
gene name if3ei
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29907292 ~ 29925164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565566.2
TCCCAGCATGCTGCTGTCTACTATTTGTTCTAGTTGCAAATCCATTTCCGGTTCCTTTCCCCGCTAGCTGCGTGGTTTTGTTAAGCACACACTTCTGTACGAGATTGGAAATATCCTAACATGTCGTACCAAACCGAAGAAACCGAAGAATATGACCCTTATTCCTACACAAATGATGATTATCTCCATACTGGTGACCCTAAAGCTGACCTGGCCTACGAGCGCCAGTACGAGCAGCAGACCTACCACGTCATCCCAGAGGTGATCAAGAACTTCCTGCAGTACTTCCACAAGACCATCTCAGACCTCATTGACCAGAAGGTGTACGAGCTGCAGGCCAACCGTGTGTCGAGCGAGAGCATTGAGCAGAAGATCTACGAAATCCAAGATGTCTACGAGAACAGcTGGAACAAGCTGACTGACCGCTTCTTCAAAACATCTCCCTGGCCAGAGGCTGAGGCCATCGCTTCCCTCGTTGGAAACGATGCTGTGTTCTTGATCCTGTATAAGGAGTTGTACTACAGACACATCTATGCTAAAGTCAGTGGAGGACCCACTCTCGACCAGAGATTTGAGTCTTACTACAATTACTGCAACCTCTTCAACTACATTCTAAATGCAGATGGACCCGCCCCCTTGGAGCTACCCAACCAGTGGCTCTGGGACATTATTGATGAATTCATTTATCAGTTCCAGTCGTTCAGCCAGTATCGCTGCAAGACAGCCAAGAAGTCTGAGGAGGAGATTGAGTTCCTGAGGAACAACCCCAAGATCTGGAATGTCCACAGCGTTCTAAACGTGCTCCACTCGCTGGTGGACAAGAGCAACATCAACCGCCAGCTGGAGGTCTATACCAGTGGAGGCGATCCAGAGAGTGTGGCTGGCGAGTATGGCCGTCATTCCCTATATAAGATGCTGGGGTACTTCAGCCTGGTGGGGCTGCTGAGGCTACATTCTCTGCTCGGGGACTACTACCAGGCCATCAAAGTCCTGGAGAACATCGAGCTCAACAAGAAGAGTATGTACTCTCGTGTGCCTGAGTGCCAGATCACCACCTACTACTACGTGGGCTTTGCCTACCTGATGATGAGGAGGTACCAGGATGCCATCCGTGTCTTTGCCAACATCCTACTCTACATCCAGAGGACCAGGAACATGTTTCAGAGGTCCACCTATAAATATGAGATGATCAGCAAGCAGAACGAGCAGATGCACGGGCTGTTGGCAATAGCCCTGACCATGTACCCCATGCGCATCGACGAAAGCATCCACACTCAGCTCAGGGAGAAGTATGGAGACAAGATGCTTCGCATGCAGAAGGGAGACCTGCAGGTGTTTGAGGAGCTCTTCAGCTTTGCCTGTCCCAAGTTCCTGTCCCCGGTGGTGCCCAACTACGATAATGTGCTCCCCAACTACCACAAGGAGCCCTTCCAGCAGCAGCTCAAGGTGTTCGCTGAGGAGGTGCAGCAACAGGCGCAGCTCTCTACCATCCGCAGTTTCCTGAAGCTCTACACCACCATGCCTGTGGCCAAGCTGGCAGGGTTCCTGGACATGACTGAGCAGGAGTTTCGCATCCAGCTTCTGGTCTTCAAACACAAGATGAAGAACCTGGTGTGGACCAGCGGCATCTCTGCCTTGGACGGAGAATTCCAGTCCGCCTCCGAGGTCGACTTCTACAtcgacaagGACATGATCCACATCGCAGACACCAAGGTGGCCCGTCGCTATGGAGACTTCTTCATCAGACAGATCCACAAGTTTGAGGAGTTGAACAGAACGCTGAAGAAGATGGCCATGAGTGGAGCCAGCACCAATGCCACAGCCGCCACCACAACCACCCGGGCCACATGAGTCTGACCTCTGATTTACAGCCACTAAATCTGGCCTACCTGGCTCTCTATTTCTTGGCTCTGTTGATCCTCCAACAGAACGATTGATAAtgctttttttatttaacaataAAGGATGAAGTGGTGAGCTAAAAGCCATATTTTGTTGGGTTGCA

Function

NR:

description
eukaryotic translation initiation factor 3 subunit L-like

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565566.2 True 2005 mRNA 0.51 15 29907292 29925164

Neighbor

gene id symbol gene type direction distance location
LOC110491800 LOC106579437 coding upstream 128151 29776440 ~ 29779141 (+)
LOC110491799 LOC106578370 coding upstream 179973 29714278 ~ 29727319 (+)
LOC110491797 LOC106579418 coding upstream 278281 29534042 ~ 29629011 (+)
LOC110491796 NA coding upstream 395683 29503409 ~ 29511609 (+)
irf3 irf-3 coding upstream 414390 29481644 ~ 29492902 (+)
LOC110491802 cssa19h10orf105 coding downstream 217265 30142429 ~ 30144341 (+)
LOC110491805 LOC106579442 coding downstream 674230 30599394 ~ 30658325 (+)
LOC110492869 LOC106599969 coding downstream 775835 30700999 ~ 30704172 (+)
LOC110492895 NA coding downstream 782859 30708023 ~ 30708936 (+)
LOC110491812 NA coding downstream 1092411 31017575 ~ 31075269 (+)
G1361529 NA non-coding upstream 74117 29832960 ~ 29833175 (+)
G1361524 NA non-coding upstream 78496 29828570 ~ 29828796 (+)
G1361517 NA non-coding upstream 81574 29825513 ~ 29825718 (+)
G1361155 NA non-coding upstream 166213 29740751 ~ 29741079 (+)
G1361114 NA non-coding upstream 250624 29656461 ~ 29656668 (+)
G1361592 NA non-coding downstream 14990 29940154 ~ 29940377 (+)
G1361667 NA non-coding downstream 15959 29941123 ~ 29941688 (+)
G1361684 NA non-coding downstream 29346 29954510 ~ 29954952 (+)
G1361685 LOC106579432 non-coding downstream 30415 29955579 ~ 29956671 (+)
G1361687 NA non-coding downstream 32272 29957436 ~ 29957661 (+)
G1361207 NA other upstream 102924 29802654 ~ 29804368 (+)
G1358698 kif22 other upstream 1859902 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 1961451 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 2330200 27561141 ~ 27595350 (+)
G1358292 NA other upstream 2575017 27329311 ~ 27332275 (+)
G1361671 NA other downstream 18277 29943441 ~ 29943756 (+)
G1362902 fgfr2 other downstream 1029445 30954609 ~ 30955975 (+)
G1363401 NA other downstream 1309329 31234493 ~ 31235386 (+)
G1364768 NA other downstream 2476270 32401434 ~ 32401808 (+)

Expression


Co-expression Network