LOC110491805 (LOC106579442)


Basic Information

Item Value
gene id LOC110491805
gene name LOC106579442
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 30599394 ~ 30658325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945881.1
ATGCGGCGGTTTTTGTGTCGCTTCCTCAGATTCACAGAGTTCCTTCAGCCCTTTGAGAGAGTGATCCAGCCAGAGGAGCTGTGGCTCTACAAAAATCCCTTGGTGGAGTCGGACCACATCCCCAAGAGGGTCATGTTCGCGATTTCATTTCTCACTCCGTTGGCTGTGATATTTGTGGTGAAGATCATTCAGCGGACAGATAAGACAGAAATCAAGGAGGCGTGTCTAGCTGTCTCACTTGCTCTGGCTTTGAATGGAGTCTTCACAAACACTATCAAGTTGATAGTTGGCAGGCCCAGGCCAGACTACTATCAGCGCTGTTTCCCAGATGGACAGGTGAATATTAAGATGCTGTGCACCGGAGAACCAGACCTAGTGTCAGAGGGACGCAAGAGTTTCCCCAGCAGCCACTCCTCCTTTGCGTTCTCTGGCTTGGGCTTCACCTCCTTCTATCTGGCTGGGAAGCTGCAGTGCTTCACAGACGGGGGCCGCGGGTGCAGCTGGCGTCTGTGTGCCATGTTGCTGCCTCTCTACAGCGCTTTGATGATCGCCCTGTCCCGCACCTGCGACTACAAACACCACTGGCAAGATGCCTTTGTTGGAGGGGCGATCGGCCTGCTTTTTGCCTACATCTGCTACCGACAGCACTACCCTCCGTTCCTGCACATGGACTGCCACCTGCCTTATGCCAGTCTGGACAAAGCCCCCCACCTCATTTCTGCCCAGGGCGATCCTCGGGTCCTGCCCACTGAGAACGCCACCAGCCTGCCTCTGAAGGGAATGACGGAGGGGCCTGTATGACTCCTGCCCACCCCTACCTCCAGACAGTCTCTAACCCCACCCTCACCCCAGGACCACCCAACCCGCTCCCCCTCTCACTAACTGTAGATGACTAGCTAGCACTTACATATACCAGTGGACAGTGCtgtaccccccctccctctctcagtctttctccctgtctctcacctccctccatcctcacccTTTGTTTGTTTTGCCTGCCGGAATCAGCACCCTTTCAGTGGTCTTTATTTAGAGAGGCTGTGTATGTATGGCATCTGGGAATATAGGACAACACTGCTGGAGCAAAAAGGCAAAGCCCTAACCCAACATTAAATGGCTAGGATGCTCATTACAAGTTGTTGCTCGACATTTTATTTACTGCTCACTTTAGGAGAATGGAGTTAGCTGGTATAGCGGTTGGTATCAATTTGATGTAGAGTTGGATGGAAAGCAGAGCGCCTGGTGGTAAATGCCATTAAATGTCACAGCAATGAGGTGTGTTAGATGTCACACAGCTCCccaatttgatttatgagatatCTAATCGCTTTGTCAGTGATGGAATTCACACTACAAAATCTGATAGCTCACACATTTCTTACTTTGAGAGAACACATCAACTATAATGGCCAGATGTATGGTCACTAATGTTGTCCAAACTGTATTCTATTATTATTCAATTAGCCTTGGTCTTACACCCACAGACGTTGTTTTTGCATTGTTCACATCTCTCCTACTGCTGGTTTTCCATGGAAACAGAATGATAAATATAACACCAATAGGTCATTATCAATAAAACGTCACAATAGCAACCGACTTGGCTGCTGGGGGGGAAAGGAGACTCCCAGTTccgctaaaaccattgacaactatGTGCCGTTTTCAAGgaattgttaaataaatgttattgcTATTTGGTTTTAATATCACACTTAGCTCTATCATCAGAGGTTTACAGCAATCAGTAGACATAATTTCAACAACAtcaagggctcccgagtggcacagcggtctaaggcactgtttgattccaggctgtatcacaactggccg

Function

NR:

description
phospholipid phosphatase 4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K18693 DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945881.1 True 1839 mRNA 0.49 6 30599394 30658325

Neighbor

gene id symbol gene type direction distance location
LOC110491802 cssa19h10orf105 coding upstream 455053 30142429 ~ 30144341 (+)
LOC110491801 if3ei coding upstream 674230 29907292 ~ 29925164 (+)
LOC110491800 LOC106579437 coding upstream 820253 29776440 ~ 29779141 (+)
LOC110491799 LOC106578370 coding upstream 872075 29714278 ~ 29727319 (+)
LOC110491797 LOC106579418 coding upstream 970383 29534042 ~ 29629011 (+)
LOC110492869 LOC106599969 coding downstream 42674 30700999 ~ 30704172 (+)
LOC110492895 NA coding downstream 49698 30708023 ~ 30708936 (+)
LOC110491812 NA coding downstream 359250 31017575 ~ 31075269 (+)
LOC110491811 LOC106579425 coding downstream 604834 31263159 ~ 31271221 (+)
cpn1 cpn1 coding downstream 867256 31525581 ~ 31682463 (+)
G1362053 NA non-coding upstream 129908 30469167 ~ 30469486 (+)
G1362044 NA non-coding upstream 139694 30459420 ~ 30459700 (+)
G1362038 NA non-coding upstream 152312 30446791 ~ 30447082 (+)
G1362033 NA non-coding upstream 158918 30440210 ~ 30440476 (+)
G1362032 NA non-coding upstream 159203 30439928 ~ 30440191 (+)
G1362591 NA non-coding downstream 19323 30677648 ~ 30681057 (+)
G1362688 NA non-coding downstream 49178 30707503 ~ 30707735 (+)
G1362691 NA non-coding downstream 50952 30709277 ~ 30709450 (+)
G1362707 NA non-coding downstream 58630 30716955 ~ 30717235 (+)
G1362708 NA non-coding downstream 59615 30717940 ~ 30718223 (+)
G1361671 NA other upstream 655638 29943441 ~ 29943756 (+)
G1361207 NA other upstream 795026 29802654 ~ 29804368 (+)
G1358698 kif22 other upstream 2552004 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 2653553 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 3022302 27561141 ~ 27595350 (+)
G1362902 fgfr2 other downstream 296284 30954609 ~ 30955975 (+)
G1363401 NA other downstream 576168 31234493 ~ 31235386 (+)
G1364768 NA other downstream 1743109 32401434 ~ 32401808 (+)
G1364907 NA other downstream 1948465 32606790 ~ 32607133 (+)

Expression


Co-expression Network