LOC110492869 (LOC106599969)


Basic Information

Item Value
gene id LOC110492869
gene name LOC106599969
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 30700999 ~ 30704172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110492869
ATGTCACACCAAGACAAGGTGACCCAGGTCCTGTGTGTGGAGGGCTCCCCTTTCTGTGCTCTGCGCTCGCGGGTCAGAgcaacccaggccctgtgtgtggaGGGCTGGCGCTCTTGCGCTGGCGGGTCAGAGCGACCGTGCCAGCCACTGTCGAGGCGTGTGCCTTCGAGCATAGTAGAGAGTCTGCGAGTGTGGCGAGGCTGTGCCCGGCTCCCCGCTCTGCGCTCTGTGCTCTGGCCTCACCGCTGCAAGCCGCTACACAGTGCaacccaggccctgtgtttcCAGGGCTGGCGCTCTCCGCTCTGTGCTCTGCGAATCAGAGCGACCCTGTCAGCCACTAGCGAGGCGTATGCCGTGGAGCGTACTAGAGTGTCTGCGAGCGTGGCGAGGTTGTGCGCTCGCGGGTCAGAGCGACCCAGCCAGCAGCTGCACAGCTCCGGACGTGCGCCACTGTGTGCTAGAGAGCAACTGAGTGTTCTTGTTGCGCTCGTGGCTCAGAGCGACCCAGCCAGCCGCTGCACAGGTCCAGACGTGCTCCGTTGTGAGCTAGAGAGCAGCCGAGTGTTATTGTTGCACGGCTGGGTGGGTCGACTGCACACGGCTACACACGAGCGCGCAAGCGAGCCTCGTGCATTTTCgggtctcagtctccagatcttgTCCAGTGTGGACCAAGAAGACTACTCGGAttgccaggaggaggaggaggaggaagaggttttGGAAGATGAAGGCGGGGGGGGGGAGGAATACAACCCCGAGCGCTGCAAGGTCGACGatgcctcttctccctcttctgagGAAGAGCAGCCCGAGGAAGAGCCGCCCGAGGACGAGGACGAGCGCGAGGACCGCGGCGAGGAAGAGATCTCCTCGGCCCCGGACCAACGGGAGCAGCCGTTGTTGTCGAAAAACGGCAAAATCGAGTGGTCCCCCGTGGCCTACGGCCGCCGCCGCGGGCCCCTCACGATCTGCCACGCCGGGCCGGACCAGACTCCGGGCCCCACGGTCTATGCCGCGACACAGGCCTGCGACATCGCGTCCGCCTTCCACCTGTTTGTCACACCGGCGATAGAAAGGATAATTGTTGAAATGACGAACCTGCACAGGGCCAGAAAATACGGCGACGGCTGGTGACCCATGGACGCCACGGACCTGCGCGCCTATGTAGGGCTGCTGATCCTAGCGGGCGTCTACAGGTCCCGGGGCGAGGCCGCGGCAAGCCTGTGGGACACCGAGAGGTCTTTCACAGGTACTTGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACGGACAAACTCGCAGCCATATGGGAGGTCTGGGACCTGTGGGAGGCGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACGTGACGGTGGACGATTAACTGGTCCCGTTCAGAGGCCGCTGTCCTTTCCGTCAGTACATCCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtGTACACCGGCAAGGCGGCCGGCGGAGGCCCCgagaagaaccaggggatgcgCGTCGTCCTCGATCTGACAACGGGCCTGAGCGGTCGCAACATCACCTGCGACAACTTCTTCACCTCCTACGACCTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCGAGTCCAGGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTGGTGTCCTACCTGGCAAAGAGAAACAAGAACGTGCTACTTTTGAGCACGCTGCACACAAAGGGCCACATTAGCGATCGCCGCGACAGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTGGGCACCTACAGCTGCAGAcggatgactgcccgctggcccctggtcgtCTTCCACAACATCCTTGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCTGACTGGATGCCTGGCAAGCGGAACAAGCGCAGGGTGTTCCtcgagcagctgggaaaggcactcgTGAAGCCGCTGATCCAAAGAAGGCAGCATCTGCCCCGCACCGAAGCGGCGTCATGA
>TU1557278
GGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCGAGTCCAGGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTGGTGTCCTACCTGGCAAAGAGAAACAAGAACGTGCTACTTTTGAGCACGCTGCACACAAAGGGCCACATTAGCGATCGCCGCGACAGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTGGGCACCTACAGCTGCAGAcggatgactgcccgctggcccctggtcgtCTTCCACAACATCCTTGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCTGACTGGATGCCTGGCAAGCGGAACAAGCGCAGGGTGTTCCtcgagcagctgggaaa

Function

NR:

description
LOW QUALITY PROTEIN: piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110492869 False 2183 mRNA 0.60 4 30700999 30704172
TU1557278 True 462 TUCP 0.60 1 30703647 30704108
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491805 LOC106579442 coding upstream 42674 30599394 ~ 30658325 (+)
LOC110491802 cssa19h10orf105 coding upstream 556658 30142429 ~ 30144341 (+)
LOC110491801 if3ei coding upstream 775835 29907292 ~ 29925164 (+)
LOC110491800 LOC106579437 coding upstream 921858 29776440 ~ 29779141 (+)
LOC110491799 LOC106578370 coding upstream 973680 29714278 ~ 29727319 (+)
LOC110492895 NA coding downstream 3851 30708023 ~ 30708936 (+)
LOC110491812 NA coding downstream 313403 31017575 ~ 31075269 (+)
LOC110491811 LOC106579425 coding downstream 558987 31263159 ~ 31271221 (+)
cpn1 cpn1 coding downstream 821409 31525581 ~ 31682463 (+)
LOC110491816 NA coding downstream 891114 31595286 ~ 31597988 (+)
G1362591 NA non-coding upstream 19942 30677648 ~ 30681057 (+)
G1362053 NA non-coding upstream 231513 30469167 ~ 30469486 (+)
G1362044 NA non-coding upstream 241299 30459420 ~ 30459700 (+)
G1362038 NA non-coding upstream 253917 30446791 ~ 30447082 (+)
G1362033 NA non-coding upstream 260523 30440210 ~ 30440476 (+)
G1362688 NA non-coding downstream 3331 30707503 ~ 30707735 (+)
G1362691 NA non-coding downstream 5105 30709277 ~ 30709450 (+)
G1362707 NA non-coding downstream 12783 30716955 ~ 30717235 (+)
G1362708 NA non-coding downstream 13768 30717940 ~ 30718223 (+)
G1362713 NA non-coding downstream 20401 30724573 ~ 30724878 (+)
G1361671 NA other upstream 757243 29943441 ~ 29943756 (+)
G1361207 NA other upstream 896631 29802654 ~ 29804368 (+)
G1358698 kif22 other upstream 2653609 28046682 ~ 28047390 (+)
LOC110491776 LOC106579398 other upstream 2755158 27902972 ~ 27986259 (+)
LOC110491768 LOC106579066 other upstream 3123907 27561141 ~ 27595350 (+)
G1362902 fgfr2 other downstream 250437 30954609 ~ 30955975 (+)
G1363401 NA other downstream 530321 31234493 ~ 31235386 (+)
G1364768 NA other downstream 1697262 32401434 ~ 32401808 (+)
G1364907 NA other downstream 1902618 32606790 ~ 32607133 (+)
G1364937 LOC106613263 other downstream 1965524 32669696 ~ 32670131 (+)

Expression

LOC110492869(LOC106599969) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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LOC110492869(LOC106599969) Expression in each Bioproject

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LOC110492869(LOC106599969) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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Co-expression Network