Item | Value |
---|---|
gene id | LOC110491807 |
gene name | LOC106576884 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048580.1 |
NCBI id | CM023234.2 |
chromosome length | 78541548 |
location | 31314091 ~ 31462245 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
actin-binding LIM protein 1-like isoform X11 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036946714.1 | False | 3522 | mRNA | 0.47 | 24 | 31314094 | 31445743 |
XM_021565585.2 | False | 3310 | mRNA | 0.46 | 22 | 31314094 | 31445853 |
XM_021565586.2 | False | 3277 | mRNA | 0.46 | 21 | 31314094 | 31445853 |
XM_036946717.1 | False | 3416 | mRNA | 0.46 | 23 | 31314094 | 31445854 |
XM_021565584.2 | False | 3462 | mRNA | 0.46 | 23 | 31314094 | 31445855 |
XM_036946712.1 | False | 3534 | mRNA | 0.47 | 23 | 31314094 | 31445855 |
XM_021565580.2 | False | 3568 | mRNA | 0.47 | 24 | 31314094 | 31445856 |
XM_036946713.1 | False | 3489 | mRNA | 0.46 | 24 | 31314094 | 31462245 |
TU1558423 | True | 1825 | lncRNA | 0.38 | 3 | 31314091 | 31321815 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110491810 | LOC106579441 | coding | downstream | 6553 | 31305083 ~ 31307541 (-) |
LOC110491809 | p5cs | coding | downstream | 28461 | 31270609 ~ 31285633 (-) |
LOC110492870 | ate1 | coding | downstream | 131103 | 31130117 ~ 31182991 (-) |
LOC110491806 | LOC106579428 | coding | downstream | 294779 | 30924605 ~ 31019315 (-) |
LOC110492868 | LOC106579432 | coding | downstream | 770222 | 29955527 ~ 30543872 (-) |
LOC110491813 | LOC106579422 | coding | upstream | 12546 | 31474791 ~ 31496300 (-) |
si:ch211-28p3.4 | LOC106579421 | coding | upstream | 250056 | 31712301 ~ 31728943 (-) |
ttc34 | ttc34 | coding | upstream | 488274 | 31950519 ~ 31958002 (-) |
LOC110491820 | LOC106567387 | coding | upstream | 504477 | 31966722 ~ 31989796 (-) |
LOC110491822 | LOC106567384 | coding | upstream | 594703 | 32056948 ~ 32096133 (-) |
G1363757 | NA | non-coding | downstream | 640 | 31313244 ~ 31313454 (-) |
G1363753 | NA | non-coding | downstream | 9457 | 31303769 ~ 31304637 (-) |
G1363747 | NA | non-coding | downstream | 15554 | 31298332 ~ 31298540 (-) |
G1363186 | NA | non-coding | downstream | 341373 | 30965578 ~ 30972721 (-) |
G1362759 | NA | non-coding | downstream | 558316 | 30755478 ~ 30755778 (-) |
G1363874 | NA | non-coding | upstream | 5651 | 31467896 ~ 31468974 (-) |
G1363876 | NA | non-coding | upstream | 10086 | 31472331 ~ 31472532 (-) |
G1363938 | NA | non-coding | upstream | 120175 | 31582420 ~ 31627693 (-) |
G1363871 | NA | non-coding | upstream | 208193 | 31670438 ~ 31676016 (-) |
G1363866 | NA | non-coding | upstream | 217902 | 31680147 ~ 31682329 (-) |
G1361619 | NA | other | downstream | 1388940 | 29923871 ~ 29925154 (-) |
G1361290 | NA | other | downstream | 1816539 | 29497113 ~ 29497555 (-) |
taok2b | LOC106579406 | other | downstream | 3133154 | 28177715 ~ 28237354 (-) |
G1359763 | NA | other | downstream | 3149867 | 28163463 ~ 28164227 (-) |
G1359412 | NA | other | downstream | 3785957 | 27527163 ~ 27528137 (-) |
G1363836 | NA | other | upstream | 177192 | 31639437 ~ 31650697 (-) |
G1364105 | NA | other | upstream | 423504 | 31885749 ~ 31886112 (-) |
G1364348 | NA | other | upstream | 556549 | 32018794 ~ 32019498 (-) |
G1365099 | NA | other | upstream | 1172220 | 32634465 ~ 32635511 (-) |
G1366703 | NA | other | upstream | 2221766 | 33684011 ~ 33684473 (-) |
G1363777 | NA | non-coding | upstream | 24160 | 31345975 ~ 31346383 (-) |