LOC110491816


Basic Information

Item Value
gene id LOC110491816
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31595286 ~ 31597988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036506.1
gactgtgaagagacctcttgtggaatgtcttgtggggtatgcatggtgtaactaggaggagaggcctcatttagcATAGTAGTTTCATCAGGTTTGAGCCATGTtgcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactatgactgccttggaagtgagggatctaacattaagtagccctattttgagatgtgagagaTCGCAATCTTTTTCAGAGGAATGGATGAGGGCcctattctagtgagattgccaAGGTGAACATGGCTATATTTAGTTTTGCCCGACCTATATCGAGGCACAGAATAGGGAAAGCTGAGTGGCCTCAATGGGGAAAGCTGAGCTGACTATACTGACTGTGCCAGTGGCAGACtacactaagctggcaggctgacTAACTGCCTGctacctggcctgcaccctatatCATtttggagctagaggagttagaacCCTGTCTATGTTGATAGAAAAGATGAGAGCAATGCTCCAGCTAGGAATGGCCACAATTCCTGACCACAACTACTAACCACTAgcacataactactgaccacaactacacatctactgacctcaaccacacaactactgaccacaaataCTGACCACAACTCCTGGCCACAACTACTAACCACATCCACACAACTACTGGCCACAACAATATAACTAACTACTGACCAAATCCACACTACTACTgcccacaactactgaccacaactaatgaccacaaccacacaattacacaactactgaccagaaATACTGACCACAACTCCTGACCACAACTACTAACcagaaccacacaactactgaccacaacttaCAACCACATCTACGGACCACgtccacacaactactgaccataactactgaccacaaataCTGACCACAACTCCTGGCCACAACTACTAACCACATCCACACAACTACTGGCCACAACAATATAACTAACTACTGACCAAATCCACACTACTACTGCCCACAATTCCTGACCACAACTAatcaccacaaccacacaactactgatcacAACAAATAATCACAatcactgaccacaactactgaccacaaccacacaactactgaccacaactaagAACCAtaattactgaccacaaccacacaactactgatcacAACAACACGACACCTGACCACAACAGCACAACTAATGACCACAACTATTAATTTAAACCACTGACCACAATTTGACTTGTTTCAGAATTCTAGTCTATGTCGCAAGtcatgacttcacaggagaggcgtTTGAAAGCCAAGCAAGTTGTTCAAACAAAACAGAAATGACACCGGAcgtcttatttaatgaaaggggTTGCCGTCTGCTGTGAAGCGTTCTTCCATGTATGTGGcatcaatAGAACACTCCTGACTCTCTTCCACCAGTCATaaaaggagaatggtctaatgcctcccatcaaaaagagagctggcccaagcaagcaCTTGTTCAGAGTAAGCGGTCTGTCAACCAGAAGATGGTTGCTGACTGCAAGACCAACTGTCAAGACCTGCAGTTGTCTCTGGGGGCACTACTGAATCAGTGCACTATTCTTCTGACTCTATGCAGCCAGATCCCATCTACGTGTTTGGTGTCTGCTGTGAAGGAAAGCCACAACAAGTCAACTACTTGATTGATGAAGGCATGTCATCCAGCACGGACGATGCACAGgcagtcatcaactacatgcaccatttcttcaccGACTATGGTTAacatctacatcaccagaggaacagaggaggagtaggatacgggtacggctaaaggctataagaactgatctagtgcgttgg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036506.1 True 1829 mRNA 0.45 3 31595286 31597988

Neighbor

gene id symbol gene type direction distance location
LOC110491811 LOC106579425 coding upstream 329822 31263159 ~ 31271221 (+)
LOC110491812 NA coding upstream 520538 31017575 ~ 31075269 (+)
LOC110492895 NA coding upstream 886350 30708023 ~ 30708936 (+)
LOC110492869 LOC106599969 coding upstream 891114 30700999 ~ 30704172 (+)
LOC110491805 LOC106579442 coding upstream 936961 30599394 ~ 30658325 (+)
LOC110491817 NA coding downstream 98817 31696805 ~ 31701389 (+)
LOC118939602 NA coding downstream 197285 31795273 ~ 31795389 (+)
LOC118939615 NA coding downstream 202437 31800425 ~ 31800625 (+)
znf362b LOC106572154 coding downstream 402509 32000497 ~ 32009436 (+)
LOC118939457 NA coding downstream 585925 32183913 ~ 32202153 (+)
G1363566 NA non-coding upstream 121364 31473557 ~ 31473922 (+)
G1363449 NA non-coding upstream 282138 31312936 ~ 31313148 (+)
G1363437 NA non-coding upstream 298629 31296397 ~ 31296657 (+)
G1363436 NA non-coding upstream 299891 31295108 ~ 31295395 (+)
G1363632 NA non-coding downstream 106266 31704254 ~ 31704526 (+)
G1363646 NA non-coding downstream 131034 31729022 ~ 31729233 (+)
G1363693 NA non-coding downstream 186705 31784693 ~ 31784897 (+)
G1363706 NA non-coding downstream 207405 31805393 ~ 31805927 (+)
G1364071 NA non-coding downstream 247377 31845365 ~ 31880301 (+)
G1363401 NA other upstream 359900 31234493 ~ 31235386 (+)
G1362902 fgfr2 other upstream 639311 30954609 ~ 30955975 (+)
G1361671 NA other upstream 1651530 29943441 ~ 29943756 (+)
G1361207 NA other upstream 1790918 29802654 ~ 29804368 (+)
G1364768 NA other downstream 803446 32401434 ~ 32401808 (+)
G1364907 NA other downstream 1008802 32606790 ~ 32607133 (+)
G1364937 LOC106613263 other downstream 1071708 32669696 ~ 32670131 (+)
G1366438 NA other downstream 2115245 33713233 ~ 33713620 (+)
LOC110491848 morn1 other downstream 2519493 34073929 ~ 34154670 (+)

Expression


Co-expression Network